BAC Information

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BAC

Clone NameB6Ng01-044N09
Chromosome19 (Build37)
Map Location 18,549,946 - 18,551,106
singlet/doubletsinglet
Overlap genenone
Upstream genePcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044N09.bB6Ng01-044N09.g
ACCDH870476DH870477
length1,1521,170
definitionDH870476|Mus musculus domesticus DNA, BAC clone: B6Ng01-044N09, 5' end.DH870477|Mus musculus domesticus DNA, BAC clone: B6Ng01-044N09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttgggattagcttttagattccttttagagctgaccttgagt
ttctaagtgtttggaagcagatgtataccttctgttttccagtgaacact
tttgtggcctgctcaaagggttctcaatgagatagaatactaaagctatg
gaaattagttttgctggacaagagtatcttgcttttgtttttaatgaaaa
tataatatcccggtcatccactttataactgatagatttttttaaagttt
attccatgatttaaaaagttatacagggtcacatgagaccattttaatga
agtaaatgatatttcagtatatcccttccctagcaccccactaggctcct
gctttgtccctcccattagtcttctttgttactcgagacaatttcacttt
gactttgatatcatcaacagatgcatgattttatggatctataatgtcta
ggacccacaaatgagcgaaaacatctgctacttgtcagagtcttaatttc
atatgattactgccagttgtgtctattttcctataaatgatataacttta
ttttccagtatggctgaaaaaaaatctagtgtgtatataaggcacaataa
aacaaaacaaaacaaatcaaacatgttcctccattaccgaacacctaggg
tttgtgccacaacctagctcttgtgaatactgctgtagtaaatactaagg
tgcaaacatttctgtgttgacttgaattcttttgggtaaataccaagtag
ttttatgctaggtctaatttcgatttcaatttctttttgaggaaagtttt
tactgatttccatagcagctaatgtaaagtttacatccttagcagcagtg
taaaggagttctctttggtctgaatctttgccagcattgctctttttttt
tttttaaatataaaaatattcaaacttataattgctgttaaaattttttc
ttaaaactatagtaatataattccattattttccacttttctttcctccc
ttcaatccccctcatgtatctcaaatacatggctttttcttattgtttat
ttgtatatgtacatgtatttgtaattcctaaatatgtaataaaatactgg
tcaattatgttacctttattctatagaatcctagggcgtgaacctgggag
tg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
acatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtacaaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
atttatagcagccttaattataatagccagaagctggaaagaacctagat
gtccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagtcccaaacc
taggacacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccaaggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatatagagactgccatatccagggatccaccccaatagt
cagcatccaaacgctgacaccattgcatacactagcaagattttattgaa
aggacccagatgtagctgtctcttgtgagactatgccgggcctagcaaca
cagaagtggatgctcacagtcagctaatggatggatcataggactcccaa
tggaggagctagagaaagtagccaggagctaaagggatctgcaaccctat
agtgtgaacactttatgaactaaccagtaccttggagctcttgactctag
ctgctatatatcaaagatggctagcgtcatcactgaaagagaggcccatt
gacttgccaacttatattgccaattcaggataccatgtcaaaaggggata
gtggttggcaggatagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_18549946_18551106
seq2: B6Ng01-044N09.b_40_1191 (reverse)

seq1  CACTCCCAGTGCTCA-GCACTAGGATCATAT-GAATACAGGTAACATTAT  48
      ||||||||| | ||| || |||||||  ||| ||||| |||||||||   
seq2  CACTCCCAG-GTTCACGCCCTAGGATTCTATAGAATAAAGGTAACAT--A  47

seq1  ATTGACCAAGGTAATTTTATTTACATATTTAGGAATATACATATACATGT  98
      ||||||||  || |||||| |||||||||||||||| |||| ||||||||
seq2  ATTGACCA--GT-ATTTTA-TTACATATTTAGGAAT-TACAAATACATGT  92

seq1  ACATATACATATAAACAATTAAAGAAAAAGGCCATGTATTTGAGATACAT  148
      ||||||||| |||||||||  |||||||| ||||||||||||||||||||
seq2  ACATATACAAATAAACAAT--AAGAAAAA-GCCATGTATTTGAGATACAT  139

seq1  GAGGGGGATTGAAGGGAGGAAAGAAAAGTGGAAAATAATGGAATTATATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGATTGAAGGGAGGAAAGAAAAGTGGAAAATAATGGAATTATATT  189

seq1  ACTATAGTTTTAAGAAAAAATTTTAACAGCAATTATAAGTTTGAATATTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGTTTTAAGAAAAAATTTTAACAGCAATTATAAGTTTGAATATTT  239

seq1  TTATATTTAAAAAAAAAAAAAGAGCAATGCTGGCAAAGATTCAGACCAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTAAAAAAAAAAAAAGAGCAATGCTGGCAAAGATTCAGACCAAA  289

seq1  GAGAACTCCTTTACACTGCTGCTAAGGATGTAAACTTTACATTAGCTGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTCCTTTACACTGCTGCTAAGGATGTAAACTTTACATTAGCTGCT  339

seq1  ATGGAAATCAGTAAAAACTTTCCTCAAAAAGAAATTGAAATCGAAATTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATCAGTAAAAACTTTCCTCAAAAAGAAATTGAAATCGAAATTAG  389

seq1  ACCTAGCATAAAACTACTTGGTATTTACCCAAAAGAATTCAAGTCAACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCATAAAACTACTTGGTATTTACCCAAAAGAATTCAAGTCAACAC  439

seq1  AGAAATGTTTGCACCTTAGTATTTACTACAGCAGTATTCACAAGAGCTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTTGCACCTTAGTATTTACTACAGCAGTATTCACAAGAGCTAG  489

seq1  GTTGTGGCACAAACCCTAGGTGTTCGGTAATGGAGGAACATGTTTGATTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGCACAAACCCTAGGTGTTCGGTAATGGAGGAACATGTTTGATTT  539

seq1  GTTTTGTTTTGTTTTATTGTGCCTTATATACACACTAGATTTTTTTTCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTATTGTGCCTTATATACACACTAGATTTTTTTTCAG  589

seq1  CCATACTGGAAAATAAAGTTATATCATTTATAGGAAAATAGACACAACTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTGGAAAATAAAGTTATATCATTTATAGGAAAATAGACACAACTG  639

seq1  GCAGTAATCATATGAAATTAAGACTCTGACAAGTAGCAGATGTTTTCGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAATCATATGAAATTAAGACTCTGACAAGTAGCAGATGTTTTCGCT  689

seq1  CATTTGTGGGTCCTAGACATTATAGATCCATAAAATCATGCATCTGTTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGGGTCCTAGACATTATAGATCCATAAAATCATGCATCTGTTGA  739

seq1  TGATATCAAAGTCAAAGTGAAATTGTCTCGAGTAACAAAGAAGACTAATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCAAAGTCAAAGTGAAATTGTCTCGAGTAACAAAGAAGACTAATG  789

seq1  GGAGGGACAAAGCAGGAGCCTAGTGGGGTGCTAGGGAAGGGATATACTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGACAAAGCAGGAGCCTAGTGGGGTGCTAGGGAAGGGATATACTGA  839

seq1  AATATCATTTACTTCATTAAAATGGTCTCATGTGACCCTGTATAACTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTTACTTCATTAAAATGGTCTCATGTGACCCTGTATAACTTTT  889

seq1  TAAATCATGGAATAAACTTTAAAAAAATCTATCAGTTATAAAGTGGATGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCATGGAATAAACTTTAAAAAAATCTATCAGTTATAAAGTGGATGA  939

seq1  CCGGGATATTATATTTTCATTAAAAACAAAAGCAAGATACTCTTGTCCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGATATTATATTTTCATTAAAAACAAAAGCAAGATACTCTTGTCCAG  989

seq1  CAAAACTAATTTCCATAGCTTTAGTATTCTATCTCATTGAGAACCCTTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAATTTCCATAGCTTTAGTATTCTATCTCATTGAGAACCCTTTG  1039

seq1  AGCAGGCCACAAAAGTGTTCACTGGAAAACAGAAGGTATACATCTGCTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCCACAAAAGTGTTCACTGGAAAACAGAAGGTATACATCTGCTTC  1089

seq1  CAAACACTTAGAAACTCAAGGTCAGCTCTAAAAGGAATCTAAAAGCTAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTTAGAAACTCAAGGTCAGCTCTAAAAGGAATCTAAAAGCTAAT  1139

seq1  CCCAAGTGAATTC  1161
      |||||||||||||
seq2  CCCAAGTGAATTC  1152