BAC Information

Click to search

BAC

Clone NameB6Ng01-046B22
Chromosome19 (Build37)
Map Location 54,516,313 - 54,614,141
singlet/doubletdoublet
Overlap genenone
Upstream geneDusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
Downstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046B22.bB6Ng01-046B22.g
ACCDH871381DH871382
length1,0021,068
definitionDH871381|Mus musculus domesticus DNA, BAC clone: B6Ng01-046B22, 5' end.DH871382|Mus musculus domesticus DNA, BAC clone: B6Ng01-046B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,613,581 - 54,614,141)(54,516,313 - 54,517,395)
sequence
gaattctgaacttataataaaagattctaatgtactaaggtttaatgatc
taagttagagacagttccaaggatcccactgttgtcatgttttatcttgg
aggcccccactcctgacattgagggtgactggaaagaacacagattttaa
actttattcaatcctttcttctttcatgtgtgttgtgactagattttcaa
gtttcttataaaccaagttctattccatcacagggacatttttcttatat
tttatttaataacaataacacccatgatatctcaaggaagacccaacaat
gactatagaaatagatatgctaacaagaaaggacaaatctcatggggttc
cacccctagacaaagaactataggcaatacaggcagaaagaagagttagt
ctctcccagagatgagacccttagctggttacccaagacaaagtagtcag
tacgaaaatctcatacacacaagctgaaagaaagatgaaatttcaagacc
tgtaagtcatataaagtcctcagaaattgctggttgtttgtgaacctaga
ggctgcctggggctgagaaaaaagaaaaacaaacctgggtatgccccaat
agttaaaacattcctgggaacagcttgaccataagataaagaggaatgtg
aggacataatagagctatctgaactgagtcaacaactcacagaactctga
caccctgcacgtacatgtaatttttctgctgatgtttgaataagccaata
gtgtgtcgctatgctgaattccacacccctaagccccttaccccataaaa
acccctagctttcgagcctcgtggccgacatctgttatctcctgtatggg
atgcatgttggtccagagctccgtcattaaactacctcatgtaattacat
caggtggtctattcatgattcttgggtgcacaccagatgggattgagtgg
gggtttctcactagttctatcaaagcagatcagctttgttgtattatatg
aa
gaattcccttattttctatgtcactgcaccagctacctgacaagagcatg
aagtgaatcaacatatgttctcaattgtgaaatgaaaaagaattttgata
taagattcccattcagaagtacagagagaagaatgcatagggcataagaa
acacaagtacatcgaacatgtcatacagcctgaccgccccatgatttgat
ttaacaggctcaggaaggagaagcgggaagaggcagatgttaagagaggg
ccaactttatgaacagtgatgagcatccggaagctgtaggttcaagactc
tgtccttaaccaaataggacacattaaaacaaaagcaagcacagccgcag
gaagatgaggcgactgaagccaggggcaggaggaatactaagaacaagag
taaatttggctgagtgtcacaggcctgagattttgccatttgagaggcca
agataggaagatagcaagttcaagactatcctgtgctgcaaagttgagtt
ttgggcaattagtgaagctctgtttagacatttagtaaggtaaaaaaaag
gttaagaatatactggtaaaatgattgcctaatatgtgtgaggggctagg
tttaatctcagccatgaagaaataaaatgaagtaagaaaaaaaaatttac
ttaaaagtgctgcaaccgatatctcacttaaacaatggaaaggagacaaa
ctagcatttctaaattaattcaacatccagcaaaaatctccttgttcagt
gagtgaagtcttgaaacattacatccacaaacagaaacagtaaaacatta
tcccagcatcctaaaatataccagaagaaataggaaagccatcaaaaccc
acactggctgatattacagaaacaatacttcatcgtggatagatacaatt
aaagggaggctttgtatatgggtgaaactgtgattgtaaagtatagagac
agtatcgatcggtgtatgccaggtagagaaaaaacgcgatcgcggggaga
gtatacaacagtgaaggtatatctgatatgtatattatacaaataaggga
tcattcaatacaactaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_54613581_54614141
seq2: B6Ng01-046B22.b_42_602 (reverse)

seq1  CCCAGGCAGCCTCTAGGTTCACAAACAACCAGCAATTTCTGAGGACTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCAGCCTCTAGGTTCACAAACAACCAGCAATTTCTGAGGACTTTA  50

seq1  TATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAGCTTGTGTGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAGCTTGTGTGTATG  100

seq1  AGATTTTCGTACTGACTACTTTGTCTTGGGTAACCAGCTAAGGGTCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCGTACTGACTACTTTGTCTTGGGTAACCAGCTAAGGGTCTCAT  150

seq1  CTCTGGGAGAGACTAACTCTTCTTTCTGCCTGTATTGCCTATAGTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGAGAGACTAACTCTTCTTTCTGCCTGTATTGCCTATAGTTCTTT  200

seq1  GTCTAGGGGTGGAACCCCATGAGATTTGTCCTTTCTTGTTAGCATATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGGGTGGAACCCCATGAGATTTGTCCTTTCTTGTTAGCATATCTA  250

seq1  TTTCTATAGTCATTGTTGGGTCTTCCTTGAGATATCATGGGTGTTATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATAGTCATTGTTGGGTCTTCCTTGAGATATCATGGGTGTTATTGT  300

seq1  TATTAAATAAAATATAAGAAAAATGTCCCTGTGATGGAATAGAACTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATAAAATATAAGAAAAATGTCCCTGTGATGGAATAGAACTTGGT  350

seq1  TTATAAGAAACTTGAAAATCTAGTCACAACACACATGAAAGAAGAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAAACTTGAAAATCTAGTCACAACACACATGAAAGAAGAAAGGA  400

seq1  TTGAATAAAGTTTAAAATCTGTGTTCTTTCCAGTCACCCTCAATGTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAAGTTTAAAATCTGTGTTCTTTCCAGTCACCCTCAATGTCAGG  450

seq1  AGTGGGGGCCTCCAAGATAAAACATGACAACAGTGGGATCCTTGGAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGGCCTCCAAGATAAAACATGACAACAGTGGGATCCTTGGAACTG  500

seq1  TCTCTAACTTAGATCATTAAACCTTAGTACATTAGAATCTTTTATTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAACTTAGATCATTAAACCTTAGTACATTAGAATCTTTTATTATAA  550

seq1  GTTCAGAATTC  561
      |||||||||||
seq2  GTTCAGAATTC  561

seq1: chr19_54516313_54517395
seq2: B6Ng01-046B22.g_65_1132

seq1  GAATTCCCTTATTTTCTATGTCACTGCACCAGCTACCTGACAAGAGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTATTTTCTATGTCACTGCACCAGCTACCTGACAAGAGCATG  50

seq1  AAGTGAATCAACATATGTTCTCAATTGTGAAATGAAAAAGAATTTTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAATCAACATATGTTCTCAATTGTGAAATGAAAAAGAATTTTGATA  100

seq1  TAAGATTCCCATTCAGAAGTACAGAGAGAAGAATGCATAGGGCATAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTCCCATTCAGAAGTACAGAGAGAAGAATGCATAGGGCATAAGAA  150

seq1  ACACAAGTACATCGAACATGTCATACAGCCTGACCGCCCCATGATTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTACATCGAACATGTCATACAGCCTGACCGCCCCATGATTTGAT  200

seq1  TTAACAGGCTCAGGAAGGAGAAGCGGGAAGAGGCAGATGTTAAGAGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGGCTCAGGAAGGAGAAGCGGGAAGAGGCAGATGTTAAGAGAGGG  250

seq1  CCAACTTTATGAACAGTGATGAGCATCCGGAAGCTGTAGGTTCAAGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTATGAACAGTGATGAGCATCCGGAAGCTGTAGGTTCAAGACTC  300

seq1  TGTCCTTAACCAAATAGGACACATTAAAACAAAAGCAAGCACAGCCGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTAACCAAATAGGACACATTAAAACAAAAGCAAGCACAGCCGCAG  350

seq1  GAAGATGAGGCGACTGAAGCCAGGGGCAGGAGGAATACTAAGAACAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGAGGCGACTGAAGCCAGGGGCAGGAGGAATACTAAGAACAAGAG  400

seq1  TAAATTTGGCTGAGTGTCACAGGCCTGAGATTTTGCCATTTGAGAGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGGCTGAGTGTCACAGGCCTGAGATTTTGCCATTTGAGAGGCCA  450

seq1  AGATAGGAAGATAGCAAGTTCAAGACTATCCTGTGCTGCAAAGTTGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGAAGATAGCAAGTTCAAGACTATCCTGTGCTGCAAAGTTGAGTT  500

seq1  TTGGGCAATTAGTGAAGCTCTGTTTAGACATTTAGTAAGGTAAAAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAATTAGTGAAGCTCTGTTTAGACATTTAGTAAGGTAAAAAAAAG  550

seq1  GTTAAGAATATACTGGTAAAATGATTGCCTAATATGTGTGAGGGGCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAATATACTGGTAAAATGATTGCCTAATATGTGTGAGGGGCTAGG  600

seq1  TTTAATCTCAGCCATGAAGAAATAAAATGAAGTAAGAAAAAAAAATTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTCAGCCATGAAGAAATAAAATGAAGTAAGAAAAAAAAATTTAC  650

seq1  TTAAAAGTGCTGCAACCGATATCTCACTTAAACAATGGAAAGGAGACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTGCTGCAACCGATATCTCACTTAAACAATGGAAAGGAGACAAA  700

seq1  CTAGCATTTCTAAATTAATTCAACATCCAGCAAAAATCTCCTTGTTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTTCTAAATTAATTCAACATCCAGCAAAAATCTCCTTGTTCAGT  750

seq1  GAGTGAAGTCTTGAAACATTACATCCACAAACAGAAACAGTAAAACATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAGTCTTGAAACATTACATCCACAAACAGAAACAGTAAAACATTA  800

seq1  TCCCAGCATCCTAAAATATACCAGAAGAAATAGGAAAGCCATCAAAACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCATCCTAAAATATACCAGAAGAAATAGGAAAGCCATCAAAACCC  850

seq1  ACACTGGCTGATAATTACAGAAACAATACTTCATCGTGGATAGATACAAT  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACACTGGCTGAT-ATTACAGAAACAATACTTCATCGTGGATAGATACAAT  899

seq1  TAAAGGGAGGCTTTTGTATATGGGTGAAAACTGTGATTGTAAAGTATAGA  950
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  TAAAGGGAGGC-TTTGTATATGGGTG-AAACTGTGATTGTAAAGTATAGA  947

seq1  GACAGTAATCGATCGGTGTAATGCCAGGTAGAGAAAAAAAGGCCGATCGC  1000
      |||||| |||||||||||| ||||||||||||||||||| |  |||||||
seq2  GACAGT-ATCGATCGGTGT-ATGCCAGGTAGAGAAAAAACG--CGATCGC  993

seq1  -GGGAGAGTTATACAACAGTGAAGGTATATCCTTGAATAATGTTATATTA  1049
       ||||||| ||||||||||||||||||||||  |||   ||| |||||||
seq2  GGGGAGAG-TATACAACAGTGAAGGTATATC--TGA--TATG-TATATTA  1037

seq1  TACCACATAAGGGATCCATTCAATACAAACTACA  1083
      || || ||||||||| |||||||||| |||||||
seq2  TA-CAAATAAGGGAT-CATTCAATAC-AACTACA  1068