BAC Information

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BAC

Clone NameB6Ng01-052D20
Chromosome19 (Build37)
Map Location 47,585,023 - 47,755,058
singlet/doubletdoublet
Overlap geneObfc1, Slk, Col17a1
Upstream geneTrim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a
Downstream gene6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576, Sorcs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052D20.bB6Ng01-052D20.g
ACCDH875651DH875652
length1,1161,172
definitionDH875651|Mus musculus domesticus DNA, BAC clone: B6Ng01-052D20, 5' end.DH875652|Mus musculus domesticus DNA, BAC clone: B6Ng01-052D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,753,948 - 47,755,058)(47,585,023 - 47,586,189)
sequence
gaattctcctgaaacacttgcagctacagggttcacactgctgtagctgg
gacccctacctgctaggaagctatatggataagtagccatttgtactaag
tggtccgtctcctctccagggagctctagcggcaactcctcccctgagta
cccacgaaaggaactcggtaagtcccctccttattttccagctgaatgct
ttaatgatgcgcgcacgtgcacacacatgcacacgcacaggcacactggg
ataccacaagccaattggcttcttctgaggagtttggctcctgctgtctt
gccttccccttcactctgaagcatcttaagagtggctgccagtcacatta
gcttgctgtcatcagcctttgctcatgacaccattaaaatgataagccat
ttgcacaaggttcatgctaggacacacaagcccctaaggccaagcagtag
gatccttccttctgtggccttcacagaggcctggcaccaaggaggagcag
cagtctcagagctcaaatgaagacacccagctcctcctccataaataaac
tcccttccagagtccaagtcattcgcctgggccaccctcagctgtgcctt
cacttgaccatttgtaccatatgtctttgatcatgttcttagaatctcaa
tgtatagatgacctggggttacctatgattataattttctctatttactt
gcctttggaaaaccaaggcaggctttaataaacaaattaaagatttagca
gtctttgggtccatttgacaatgttttcagctggtcctaatatatcacac
gtgcactcgcacacgtgtgcacacacacacatgcacacgcatgcacacac
actcgcgcgcacacacctatctcgcagacacagtgctctaagctaactca
acatttgctcaactaaattgcattgaggtgttgcaaaaatcattatttac
ccttcaacatctgggaaacatttctcagcatctgctttacagaaaccccc
ctacaccccacaccccacccctatcctagattagaccctttggaaaatat
ctccaagtgtcaaaatatttcagcatggcagacattacgcctaagaacaa
tattttccttctttct
gaattcacccaacaggcttttcctgtgctgagtcagcgtgctctaggcat
gcgtcagctgagcaggccggcatttaggcagggtcagaagtctgctctgg
agggtcacacttggtaactgtgctgaacttgggttctgctctgactgatc
acggctttgcccccaggctgctgggcgatctttcccatgagcatcagctc
cctcctctgagaggccgggtcagcagggaaagcactcgcagccataggga
gccaactgcagctcagctcccaggaactgcaaacaatacaggacgcatcc
tctccagagactgcctcgcggcctcaggatgtgctgcctagcctgtttca
aaggccacagtcctgagagcaaggacaccaggggtcccttctgacaagcc
agccgcttccgggactgagatctgtgttttgctcgtcactttcaaaagaa
caatgacagacacgcacggttcaggaaaccaaaattgctcacagactgaa
gcagcgacttggtgctcaggccaggaactgggtggcttcctgaaatatat
ataatctgcccgcccaaacatagtcagcattcatctagctgtcagagaaa
caatggtcctgtaagatctgcttatcatgtttctggatttgctaagaaag
gcgacggttagaaaaaaaatcagaagggagagacggggaagtgagcagcc
atgagtgacaacagggcgcccagggctctcgggtttctgcatcgcccgag
catctgcagtctcccagggcgctattaattgagggacactgacatcccaa
gcagggcaattttgaccaactgattcataattgatggaagaaatcgtttt
caaagagaaacaaatacagcgacagatcagtttctttttaaatatacagc
actacacagaaacagtcttctgctctaagctcttcaaaaggataccacgt
caaaactccgccacagaacatcctgccctgggggagtcctgacgtctttc
caagtcaatttgtagccatcatggcttcacatgaagtgggcctcgcttac
ttactatgccttctttagaactgggctatgttaccagacccataaagttc
tggacattagaggcctcagcagaaggactgtgaatttgaagctagctggg
ttatgtaaccaagtttccaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_47753948_47755058
seq2: B6Ng01-052D20.b_42_1157 (reverse)

seq1  AGAAAG-AGAGAAATA-TGGTCTTAGGCGT-ATGTCTGGCATGCTGAATA  47
      |||||| ||  ||||| || |||||||||| ||||||| |||||||||  
seq2  AGAAAGAAGGAAAATATTGTTCTTAGGCGTAATGTCTGCCATGCTGAAAT  50

seq1  TTTTTGACACTTGGAGATATTTT-CAAAGTGTCTAAATCTA-GATAGGGG  95
       |||||||||||||||||||||| ||||| |||| |||||| ||||||||
seq2  ATTTTGACACTTGGAGATATTTTCCAAAGGGTCT-AATCTAGGATAGGGG  99

seq1  T-GGGTGT-GGGTGTAGGGGGGTTTCTGTATAGCAGATGCTGAAGAAATG  143
      | |||||| ||||||||||||||||||||| ||||||||||| |||||||
seq2  TGGGGTGTGGGGTGTAGGGGGGTTTCTGTAAAGCAGATGCTG-AGAAATG  148

seq1  TTTCCCAGATGTTGAAGGGTAAATAATGATTTTTGCAACACCTCAATGCA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGATGTTGAAGGGTAAATAATGATTTTTGCAACACCTCAATGCA  198

seq1  ATTTAGTTGAGCAAATGTTGAGTTAGCTTAGAGCACTGTGTCTGCGAGAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTGAGCAAATGTTGAGTTAGCTTAGAGCACTGTGTCTGCGAGAT  248

seq1  AGGTGTGTGCGCGCGAGTGTGTGTGCATGCGTGTGCATGTGTGTGTGTGC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTGCGCGCGAGTGTGTGTGCATGCGTGTGCATGTGTGTGTGTGC  298

seq1  ACACGTGTGCGAGTGCACGTGTGATATATTAGGACCAGCTGAAAACATTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGTGCGAGTGCACGTGTGATATATTAGGACCAGCTGAAAACATTG  348

seq1  TCAAATGGACCCAAAGACTGCTAAATCTTTAATTTGTTTATTAAAGCCTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGGACCCAAAGACTGCTAAATCTTTAATTTGTTTATTAAAGCCTG  398

seq1  CCTTGGTTTTCCAAAGGCAAGTAAATAGAGAAAATTATAATCATAGGTAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTTTCCAAAGGCAAGTAAATAGAGAAAATTATAATCATAGGTAA  448

seq1  CCCCAGGTCATCTATACATTGAGATTCTAAGAACATGATCAAAGACATAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGTCATCTATACATTGAGATTCTAAGAACATGATCAAAGACATAT  498

seq1  GGTACAAATGGTCAAGTGAAGGCACAGCTGAGGGTGGCCCAGGCGAATGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAATGGTCAAGTGAAGGCACAGCTGAGGGTGGCCCAGGCGAATGA  548

seq1  CTTGGACTCTGGAAGGGAGTTTATTTATGGAGGAGGAGCTGGGTGTCTTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACTCTGGAAGGGAGTTTATTTATGGAGGAGGAGCTGGGTGTCTTC  598

seq1  ATTTGAGCTCTGAGACTGCTGCTCCTCCTTGGTGCCAGGCCTCTGTGAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGCTCTGAGACTGCTGCTCCTCCTTGGTGCCAGGCCTCTGTGAAG  648

seq1  GCCACAGAAGGAAGGATCCTACTGCTTGGCCTTAGGGGCTTGTGTGTCCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAAGGAAGGATCCTACTGCTTGGCCTTAGGGGCTTGTGTGTCCT  698

seq1  AGCATGAACCTTGTGCAAATGGCTTATCATTTTAATGGTGTCATGAGCAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAACCTTGTGCAAATGGCTTATCATTTTAATGGTGTCATGAGCAA  748

seq1  AGGCTGATGACAGCAAGCTAATGTGACTGGCAGCCACTCTTAAGATGCTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGATGACAGCAAGCTAATGTGACTGGCAGCCACTCTTAAGATGCTT  798

seq1  CAGAGTGAAGGGGAAGGCAAGACAGCAGGAGCCAAACTCCTCAGAAGAAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAAGGGGAAGGCAAGACAGCAGGAGCCAAACTCCTCAGAAGAAG  848

seq1  CCAATTGGCTTGTGGTATCCCAGTGTGCCTGTGCGTGTGCATGTGTGTGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGGCTTGTGGTATCCCAGTGTGCCTGTGCGTGTGCATGTGTGTGC  898

seq1  ACGTGCGCGCATCATTAAAGCATTCAGCTGGAAAATAAGGAGGGGACTTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCGCGCATCATTAAAGCATTCAGCTGGAAAATAAGGAGGGGACTTA  948

seq1  CCGAGTTCCTTTCGTGGGTACTCAGGGGAGGAGTTGCCGCTAGAGCTCCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTTCCTTTCGTGGGTACTCAGGGGAGGAGTTGCCGCTAGAGCTCCC  998

seq1  TGGAGAGGAGACGGACCACTTAGTACAAATGGCTACTTATCCATATAGCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGAGACGGACCACTTAGTACAAATGGCTACTTATCCATATAGCT  1048

seq1  TCCTAGCAGGTAGGGGTCCCAGCTACAGCAGTGTGAACCCTGTAGCTGCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCAGGTAGGGGTCCCAGCTACAGCAGTGTGAACCCTGTAGCTGCA  1098

seq1  AGTGTTTCAGGAGAATTC  1111
      ||||||||||||||||||
seq2  AGTGTTTCAGGAGAATTC  1116

seq1: chr19_47585023_47586189
seq2: B6Ng01-052D20.g_67_1238

seq1  GAATTCACCCAACAGGCTTTTCCTGTGCTGAGTCAGCGTGCTCTAGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCAACAGGCTTTTCCTGTGCTGAGTCAGCGTGCTCTAGGCAT  50

seq1  GCGTCAGCTGAGCAGGCCGGCATTTAGGCAGGGTCAGAAGTCTGCTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCAGCTGAGCAGGCCGGCATTTAGGCAGGGTCAGAAGTCTGCTCTGG  100

seq1  AGGGTCACACTTGGTAACTGTGCTGAACTTGGGTTCTGCTCTGACTGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCACACTTGGTAACTGTGCTGAACTTGGGTTCTGCTCTGACTGATC  150

seq1  ACGGCTTTGCCCCCAGGCTGCTGGGCGATCTTTCCCATGAGCATCAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTTTGCCCCCAGGCTGCTGGGCGATCTTTCCCATGAGCATCAGCTC  200

seq1  CCTCCTCTGAGAGGCCGGGTCAGCAGGGAAAGCACTCGCAGCCATAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTGAGAGGCCGGGTCAGCAGGGAAAGCACTCGCAGCCATAGGGA  250

seq1  GCCAACTGCAGCTCAGCTCCCAGGAACTGCAAACAATACAGGACGCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTGCAGCTCAGCTCCCAGGAACTGCAAACAATACAGGACGCATCC  300

seq1  TCTCCAGAGACTGCCTCGCGGCCTCAGGATGTGCTGCCTAGCCTGTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAGACTGCCTCGCGGCCTCAGGATGTGCTGCCTAGCCTGTTTCA  350

seq1  AAGGCCACAGTCCTGAGAGCAAGGACACCAGGGGTCCCTTCTGACAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCACAGTCCTGAGAGCAAGGACACCAGGGGTCCCTTCTGACAAGCC  400

seq1  AGCCGCTTCCGGGACTGAGATCTGTGTTTTGCTCGTCACTTTCAAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCTTCCGGGACTGAGATCTGTGTTTTGCTCGTCACTTTCAAAAGAA  450

seq1  CAATGACAGACACGCACGGTTCAGGAAACCAAAATTGCTCACAGACTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACAGACACGCACGGTTCAGGAAACCAAAATTGCTCACAGACTGAA  500

seq1  GCAGCGACTTGGTGCTCAGGCCAGGAACTGGGTGGCTTCCTGAAATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGACTTGGTGCTCAGGCCAGGAACTGGGTGGCTTCCTGAAATATAT  550

seq1  ATAATCTGCCCGCCCAAACATAGTCAGCATTCATCTAGCTGTCAGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGCCCGCCCAAACATAGTCAGCATTCATCTAGCTGTCAGAGAAA  600

seq1  CAATGGTCCTGTAAGATCTGCTTATCATGTTTCTGGATTTGCTAAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTCCTGTAAGATCTGCTTATCATGTTTCTGGATTTGCTAAGAAAG  650

seq1  GCGACGGTTAGAAAAAAAATCAGAAGGGAGAGACGGGGAAGTGAGCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACGGTTAGAAAAAAAATCAGAAGGGAGAGACGGGGAAGTGAGCAGCC  700

seq1  ATGAGTGACAACAGGGCGCCCAGGGCTCTCGGGTTTCTGCATCGCCCGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGACAACAGGGCGCCCAGGGCTCTCGGGTTTCTGCATCGCCCGAG  750

seq1  CATCTGCAGTCTCCCAGGGCGCTATTAATTGAGGGACACTGACATCCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCAGTCTCCCAGGGCGCTATTAATTGAGGGACACTGACATCCCAA  800

seq1  GCAGGGCAA-TTTGACCAACTGATTCATAATTGATGGAAGAAATCGTTTT  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCAATTTTGACCAACTGATTCATAATTGATGGAAGAAATCGTTTT  850

seq1  CAAAGAGAAACAAATACAGCGACAGATCAGTTTCTTTTTAAATATACAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAAACAAATACAGCGACAGATCAGTTTCTTTTTAAATATACAGC  900

seq1  ACTACACAGAAACAGTCTTCTGCTCTAAGCTTCTTCAAAAGGATACCACG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTACACAGAAACAGTCTTCTGCTCTAAGC-TCTTCAAAAGGATACCACG  949

seq1  TCAAAACTCCGCCACAGAACATCCTG-CCTGGGGGAGTCCTGACGTCTTT  998
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCAAAACTCCGCCACAGAACATCCTGCCCTGGGGGAGTCCTGACGTCTTT  999

seq1  CC-AGTCAA-TTGTAGCCATCATGGCTTCACATGAAGGTGGGCCTCGC-T  1045
      || |||||| |||||||||||||||||||||||||| ||||||||||| |
seq2  CCAAGTCAATTTGTAGCCATCATGGCTTCACATGAA-GTGGGCCTCGCTT  1048

seq1  ACTTACTAATGCTTCTTTAGAACTGGGC-ATGGTAGCAGACACATAAAGT  1094
      ||||||||   ||||||||||||||||| ||| || ||||| ||||||||
seq2  ACTTACTATGCCTTCTTTAGAACTGGGCTATGTTACCAGACCCATAAAGT  1098

seq1  TCTGCACATAAGAGGCTCAAGCAGAAGGACTGTGAATTTGAGGCTAGCCT  1144
      |||| |||| ||||||   |||||||||||||||||||||| ||||| ||
seq2  TCTGGACATTAGAGGCCTCAGCAGAAGGACTGTGAATTTGAAGCTAG-CT  1147

seq1  GGGTTATGT-AGCAAG-TTCCAGGT  1167
      ||||||||| | |||| ||||||||
seq2  GGGTTATGTAACCAAGTTTCCAGGT  1172