BAC Information

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BAC

Clone NameB6Ng01-053E10
Chromosome19 (Build37)
Map Location 46,829,371 - 46,932,990
singlet/doubletdoublet
Overlap geneCnnm2
Upstream geneMgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt
Downstream geneNt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053E10.bB6Ng01-053E10.g
ACCDH876372DH876373
length591584
definitionDH876372|Mus musculus domesticus DNA, BAC clone: B6Ng01-053E10, 5' end.DH876373|Mus musculus domesticus DNA, BAC clone: B6Ng01-053E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,829,371 - 46,829,967)(46,932,407 - 46,932,990)
sequence
agacttttccaagagaaactgtaaatggtattttaaattttgaaatatta
tttagtggtcaccttctcatcactcgggggtgtctcgaagtaagtacaac
tgactggtcagtcagtgtcttacatttggaatcttcgtccaggattggag
gagacccccccttcccctgaccaccaacttgactgataggagtggagaaa
gacgtcagcaacaggcacctacttggatgctagaggcggtggcttcaaga
ctggtaactgggtctaggtaagggcacatcgggcacagtcgctggaaccc
cagtggaagggacccttcctgtcgctgctagccactcccatagccctcaa
ggtggacagtattgtggcctgggtgcacgcttcccaggagaaacctgcag
gtgccctgctctctggggacccctgctggacaggacagaagatgggcaat
cggctcaagatcaagatcactcaaccttgatcatgaccgcctggtggtac
ctttagattctggttccttcccccattctatgtgcacatccgccaaacct
gttacaacactcactgtctcccttctgttggggttgggggt
gaattccagggactatggagggagagactcagaagaaaagcaaggccgtg
cacacatcagcatgcactctgacttgccaatgaaagaggaaatggtggtt
ggcacggacaaagacagtttcttcatctaaaacaacagaaaactcaaagc
tgctgactccagggtgctgccgtggatgtgaactccatggtaacactgac
ttaagtgtggttcttccacaaagagcagcaacggtaccagaataggaaga
taataacagcaagatatttgaaatgtatttttaaattagatgctatatat
aaaagctacaaattctggattcacacatctgactttttcatagtaagaca
gtacattgcagggaatttggaaactacagaaaaataaagaaaataaaaat
cgtctgtaagctgacttcttggctacccattcagagcaatttggtgagta
tttctttccagtgctttgcctaggctagtgtgcctgtgaaccctgtgtgt
gcgtgtacacacagaaccacaagtgtggtcttggcacacacacatactct
gatatcaggggcctggggggtggggtgggggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_46829371_46829967
seq2: B6Ng01-053E10.b_49_645

seq1  GAATTCAGACTTTTCCAAGAGAAACTGTAAATGGTATTTTAAATTTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTTTTCCAAGAGAAACTGTAAATGGTATTTTAAATTTTGAA  50

seq1  ATATTATTTAGTGGTCACCTTCTCATCACTCGGGGGTGTCTCGAAGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTTAGTGGTCACCTTCTCATCACTCGGGGGTGTCTCGAAGTAAG  100

seq1  TACAACTGACTGGTCAGTCAGTGTCTTACATTTGGAATCTTCGTCCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTGACTGGTCAGTCAGTGTCTTACATTTGGAATCTTCGTCCAGGA  150

seq1  TTGGAGGAGACCCCCCCTTCCCCTGACCACCAACTTGACTGATAGGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAGACCCCCCCTTCCCCTGACCACCAACTTGACTGATAGGAGTG  200

seq1  GAGAAAGACGTCAGCAACAGGCACCTACTTGGATGCTAGAGGCGGTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGACGTCAGCAACAGGCACCTACTTGGATGCTAGAGGCGGTGGCT  250

seq1  TCAAGACTGGTAACTGGGTCTAGGTAAGGGCACATCGGGCACAGTCGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACTGGTAACTGGGTCTAGGTAAGGGCACATCGGGCACAGTCGCTG  300

seq1  GAACCCCAGTGGAAGGGACCCTTCCTGTCGCTGCTAGCCACTCCCATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCAGTGGAAGGGACCCTTCCTGTCGCTGCTAGCCACTCCCATAGC  350

seq1  CCTCAAGGTGGACAGTATTGTGGCCTGGGTGCACGCTTCCCAGGAGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGGTGGACAGTATTGTGGCCTGGGTGCACGCTTCCCAGGAGAAAC  400

seq1  CTGCAGGTGCCCTGCTCTCTGGGGACCCCTGCTGGACAGGACAGAAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGTGCCCTGCTCTCTGGGGACCCCTGCTGGACAGGACAGAAGATG  450

seq1  GGCAATCGGCTCAAGATCAAGATCACTCAACCTTGATCATGACCGCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCGGCTCAAGATCAAGATCACTCAACCTTGATCATGACCGCCTGG  500

seq1  TGGTACCTTTAGATTCTGGTTCCTTCCCCCATTCTATGTGCACATCCGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCTTTAGATTCTGGTTCCTTCCCCCATTCTATGTGCACATCCGCC  550

seq1  AAACCTGTTACAACACTCACTGTCTCCCTTCTGTTGGGGTTGGGGGT  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTTACAACACTCACTGTCTCCCTTCTGTTGGGGTTGGGGGT  597

seq1: chr19_46932407_46932990
seq2: B6Ng01-053E10.g_69_652 (reverse)

seq1  TGACCCCCACCCCACCCCCCAGGCCCCTGATATCAGAGTATGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCCACCCCACCCCCCAGGCCCCTGATATCAGAGTATGTGTGTGTG  50

seq1  CCAAGACCACACTTGTGGTTCTGTGTGTACACGCACACACAGGGTTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACCACACTTGTGGTTCTGTGTGTACACGCACACACAGGGTTCACA  100

seq1  GGCACACTAGCCTAGGCAAAGCACTGGAAAGAAATACTCACCAAATTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACTAGCCTAGGCAAAGCACTGGAAAGAAATACTCACCAAATTGCT  150

seq1  CTGAATGGGTAGCCAAGAAGTCAGCTTACAGACGATTTTTATTTTCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGGTAGCCAAGAAGTCAGCTTACAGACGATTTTTATTTTCTTTA  200

seq1  TTTTTCTGTAGTTTCCAAATTCCCTGCAATGTACTGTCTTACTATGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTAGTTTCCAAATTCCCTGCAATGTACTGTCTTACTATGAAAA  250

seq1  AGTCAGATGTGTGAATCCAGAATTTGTAGCTTTTATATATAGCATCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATGTGTGAATCCAGAATTTGTAGCTTTTATATATAGCATCTAAT  300

seq1  TTAAAAATACATTTCAAATATCTTGCTGTTATTATCTTCCTATTCTGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATACATTTCAAATATCTTGCTGTTATTATCTTCCTATTCTGGTA  350

seq1  CCGTTGCTGCTCTTTGTGGAAGAACCACACTTAAGTCAGTGTTACCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGCTGCTCTTTGTGGAAGAACCACACTTAAGTCAGTGTTACCATGG  400

seq1  AGTTCACATCCACGGCAGCACCCTGGAGTCAGCAGCTTTGAGTTTTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACATCCACGGCAGCACCCTGGAGTCAGCAGCTTTGAGTTTTCTGT  450

seq1  TGTTTTAGATGAAGAAACTGTCTTTGTCCGTGCCAACCACCATTTCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGATGAAGAAACTGTCTTTGTCCGTGCCAACCACCATTTCCTCT  500

seq1  TTCATTGGCAAGTCAGAGTGCATGCTGATGTGTGCACGGCCTTGCTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGGCAAGTCAGAGTGCATGCTGATGTGTGCACGGCCTTGCTTTTC  550

seq1  TTCTGAGTCTCTCCCTCCATAGTCCCTGGAATTC  584
      ||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTCTCTCCCTCCATAGTCCCTGGAATTC  584