BAC Information

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BAC

Clone NameB6Ng01-054I18
Chromosome19 (Build37)
Map Location 20,168,971 - 20,302,159
singlet/doubletdoublet
Overlap geneLOC100041541
Upstream geneRorb, LOC100042218
Downstream geneAnxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054I18.bB6Ng01-054I18.g
ACCDH877263DH877264
length636987
definitionDH877263|Mus musculus domesticus DNA, BAC clone: B6Ng01-054I18, 5' end.DH877264|Mus musculus domesticus DNA, BAC clone: B6Ng01-054I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,301,524 - 20,302,159)(20,168,971 - 20,169,958)
sequence
gaattcatggatatagaaggaaatggtgcctagattacagataatagaga
caagatgtcagacaagcagatagtcacagaatagacacagagacacactg
agagttagagaaggagggtgaaagagatggaaggagagggagagaaagta
aggagaagggggaggaagaagaagaagacgaagaacaagagcaagaacaa
gaagaaagaaaaagtaaatttcagtgttataaatatcagtcctattcctt
tttatttagagaaaactgaactaatctactaggttactaccacggttaaa
cacataacttgatattttagtcagatattaaatctaatacatggaaaaat
aagtacaatatactattgagacaaatgcatgtgatataaccatcactatg
aagagaccttggtgggaatcatgaataaccacacacagagatccggtttc
tgggagttacagtagccacctccctgggaaagtgtgctgcatagagtgcc
tttacgaatgatttcgaacgagaaaattaagtaacgagccctgaacaact
ggctagctctttctgggttgctttctcctcgcatggggatatagaagacg
atgagtagaggaaaaagaaagtgaagtaaccactca
gaattccttgtcctttctatcaaaatgtccaactctccaaagagagggag
aattggattttcaaacaattatggaagttttatggcatgttttattagtc
ttgaataatcatgtggatgcatctattatgggtatttatatgatttataa
tatagttaagcttcttggtagcatcagaagatcttggagcaaatactaag
gtttttttttttcactgtcattgcaatgttcaacagctttgaaccaaata
attacttcattatgagtgaatgaaagagtctcatttaactcatagttaag
aagaacacttacactcacctatattcactggtaaagtaagatattctata
gaaggcaagaaggatgaataataagtgttcatgtgcaagaagaatacctc
acagaaattatgcagatgctgtatatgttagaaaagggtatttatgaagc
aggcaatgaccttgtcttaaattccctctgaaatgagtgttctcaacaga
ggcttcaagaaaaatcatctcttgactgccacttctaaagttctatggct
gaggaattagatttgaatgaatgaaactattctcgccccttactaatcct
tgtacaaagagtatctgaagcagaaacctttaaagtactttaagataatg
ttttttgtgaaatactattttaaattttaacttactttcaaacattattt
tctatatgtatatatgaatgatactgtgtagctgttttatcttggtagaa
acattttctcctagggaaaggactgaggctcacaaggcagattcaggaat
ctttaaaaaataaaatggtggaacaacaatatgaactaaccagtaccccc
cccctggagctcctgtctctagctgcatatgaatcagaaaatgacctagt
tgggcatcagtggaaagagaggcccattggtcatgcaaacttttatatgc
ctcagtacaggggaacgacagggccagaagtagagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20301524_20302159
seq2: B6Ng01-054I18.b_45_680 (reverse)

seq1  TGAGTGGTTACTTCACTTTCTTTTTCCTCTACTCATCGTCTTCTATATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGTTACTTCACTTTCTTTTTCCTCTACTCATCGTCTTCTATATCC  50

seq1  CCATGCGAGGAGAAAGCAACCCAGAAAGAGCTAGCCAGTTGTTCAGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCGAGGAGAAAGCAACCCAGAAAGAGCTAGCCAGTTGTTCAGGGCT  100

seq1  CGTTACTTAATTTTCTCGTTCTAAATAATTCATAAAGGCACTCTTAGCAG  150
      ||||||||||||||||||||| |||| |||| ||||||||||||  ||||
seq2  CGTTACTTAATTTTCTCGTTCGAAATCATTCGTAAAGGCACTCTATGCAG  150

seq1  CACACTTTCCCATGGAGGTGGCTACTGTAACTCCCAGAAACCAGATCTCT  200
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  CACACTTTCCCAGGGAGGTGGCTACTGTAACTCCCAGAAACCGGATCTCT  200

seq1  CTGCGTGGTTATTCATGACTCCCACCAAGGTCTCTTCATAGTGATGGTTA  250
       || |||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGTGTGGTTATTCATGATTCCCACCAAGGTCTCTTCATAGTGATGGTTA  250

seq1  TATCACATGCATTTGTCTCAATTGTATATTGTATTTATTTTTCCATGTAT  300
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  TATCACATGCATTTGTCTCAATAGTATATTGTACTTATTTTTCCATGTAT  300

seq1  TAGATTTAATATCTGACTAAAATATCAAGTTATGTGTTTAACCGTGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTAATATCTGACTAAAATATCAAGTTATGTGTTTAACCGTGGTAG  350

seq1  TAACCTAGTAGATTAGTTCAGTTTTCTCTAAATAAAAAGGAATAGGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTAGTAGATTAGTTCAGTTTTCTCTAAATAAAAAGGAATAGGACTG  400

seq1  ATATTTATAACACTGAAATTTACTTTTTCTTTCTTCTTGTTCTTGTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATATTTATAACACTGAAATTTACTTTTTCTTTCTTCTTGTTCTTGCTCTT  450

seq1  GTTCTTCCTCTTCTTCTTCTTCCTCCCCCTTCTCCTTACTTTCTCTCCCT  500
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCGTCTTCTTCTTCTTCCTCCCCCTTCTCCTTACTTTCTCTCCCT  500

seq1  CTCCTTCCATCTCTTTCACCCTCCTTCTCTAACTCTCAGTGTGTCTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCATCTCTTTCACCCTCCTTCTCTAACTCTCAGTGTGTCTCTGT  550

seq1  GTCTATTCTGTGACTATCTGCTTGTCTGACATCTTGTCTCTATTATCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTCTGTGACTATCTGCTTGTCTGACATCTTGTCTCTATTATCTGT  600

seq1  AATCTAGGCACCATTTCCTTCTATATCCATGAATTC  636
      ||||||||||||||||||||||||||||||||||||
seq2  AATCTAGGCACCATTTCCTTCTATATCCATGAATTC  636

seq1: chr19_20168971_20169958
seq2: B6Ng01-054I18.g_65_1051

seq1  GAATTCCTTGTCCTTTCTATCAAAATGTCCAACTCTCCAAAGAGAGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTCCTTTCTATCAAAATGTCCAACTCTCCAAAGAGAGGGAG  50

seq1  AATTGGATTTTCAAACAATTATGGAAGTTTTATGGCATGTTTTATTAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATTTTCAAACAATTATGGAAGTTTTATGGCATGTTTTATTAGTC  100

seq1  TTGAATAATCATGTGGATGCATCTATTATGGGTATTTATATGATTTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAATCATGTGGATGCATCTATTATGGGTATTTATATGATTTATAA  150

seq1  TATAGTTAAGCTTCTTGGTAGCATCAGAAGATCTTGGAGCAAATACTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTAAGCTTCTTGGTAGCATCAGAAGATCTTGGAGCAAATACTAAG  200

seq1  GTTTTTTTTTTTCACTGTCATTGCAATGTTCAACAGCTTTGAACCAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTCACTGTCATTGCAATGTTCAACAGCTTTGAACCAAATA  250

seq1  ATTACTTCATTATGAGTGAATGAAAGAGTCTCATTTAACTCATAGTTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCATTATGAGTGAATGAAAGAGTCTCATTTAACTCATAGTTAAG  300

seq1  AAGAACACTTACACTCACCTATATTCACTGGTAAAGTAAGATATTCTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACTTACACTCACCTATATTCACTGGTAAAGTAAGATATTCTATA  350

seq1  GAAGGCAAGAAGGATGAATAATAAGTGTTCATGTGCAAGAAGAATACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAAGAAGGATGAATAATAAGTGTTCATGTGCAAGAAGAATACCTC  400

seq1  ACAGAAATTATGCAGATGCTGTATATGTTAGAAAAGGGTATTTATGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATTATGCAGATGCTGTATATGTTAGAAAAGGGTATTTATGAAGC  450

seq1  AGGCAATGACCTTGTCTTAAATTCCCTCTGAAATGAGTGTTCTCAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATGACCTTGTCTTAAATTCCCTCTGAAATGAGTGTTCTCAACAGA  500

seq1  GGCTTCAAGAAAAATCATCTCTTGACTGCCACTTCTAAAGTTCTATGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAAGAAAAATCATCTCTTGACTGCCACTTCTAAAGTTCTATGGCT  550

seq1  GAGGAATTAGATTTGAATGAATGAAACTATTCTCGCCCCTTACTAATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTAGATTTGAATGAATGAAACTATTCTCGCCCCTTACTAATCCT  600

seq1  TGTACAAAGAGTATCTGAAGCAGAAACCTTTAAAGTACTTTAAGATAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAAGAGTATCTGAAGCAGAAACCTTTAAAGTACTTTAAGATAATG  650

seq1  TTTTTTGTGAAATACTATTTTAAATTTTAACTTACTTTCAAACATTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTGAAATACTATTTTAAATTTTAACTTACTTTCAAACATTATTT  700

seq1  TCTATATGTATATATGAATGATACTGTGTAGCTGTTTTATCTTGGTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGTATATATGAATGATACTGTGTAGCTGTTTTATCTTGGTAGAA  750

seq1  ACATTTTCTCCTAGGGAAAGGACTGAGGCTCACAAGGCAGATTCAGGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTCCTAGGGAAAGGACTGAGGCTCACAAGGCAGATTCAGGAAT  800

seq1  CTTTAAAAAATAAAATGGTGGAACAACAATATGAACTAACCAGTACCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAAATAAAATGGTGGAACAACAATATGAACTAACCAGTACCCCC  850

seq1  CCCCTGGAGCTCCTGTCTCTAGCTGCATATGAATCAGAAAATGACCTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGAGCTCCTGTCTCTAGCTGCATATGAATCAGAAAATGACCTAGT  900

seq1  TGGCCATCAGTGGAAAGAGAGGCCCATTGGTCATGCAAAC-TTTATATGC  949
      ||| |||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGGCATCAGTGGAAAGAGAGGCCCATTGGTCATGCAAACTTTTATATGC  950

seq1  CTCAGTACAGGGGAACGACAGGGCCAAGAAGTGGGAGTG  988
      ||||||||||||||||||||||||| ||||||  |||||
seq2  CTCAGTACAGGGGAACGACAGGGCC-AGAAGT-AGAGTG  987