BAC Information

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BAC

Clone NameB6Ng01-055G17
Chromosome19 (Build37)
Map Location 58,637,693 - 58,719,449
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043038, Atrnl1, Gfra1, LOC100043503, 1700011F14Rik
Downstream genePnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055G17.bB6Ng01-055G17.g
ACCDH877872DH877873
length1,1971,082
definitionDH877872|Mus musculus domesticus DNA, BAC clone: B6Ng01-055G17, 5' end.DH877873|Mus musculus domesticus DNA, BAC clone: B6Ng01-055G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,718,232 - 58,719,449)(58,637,693 - 58,638,793)
sequence
gaattcacagagaagaacatagcgacactgtttcaatccactgctgtcta
gccaccattcatgggtgctaacagtgtccaaatgcaacaggtgttaccat
tctcacccctgagctccggacttgacccttgaggaattgggcgtcctcgg
gactcagcctgtgtacaggtgtgaaaggggtcctgtcctctctttcctgg
agtcagcattccaaagcactggagaagtcaacactaccaagtcagccatt
gttgctaggacttttaaaaacagctttttcagggactggagtaacagctc
taaggtcaagaagaacacctgctgtttttccagaggatctgagttcagtt
ctcagtacaccttacaagagctttctgtaactccagctcctgggaatcca
aggcctttggcttctccagatacctgcactggagtgcacatattcaaatg
cagacagacagacagcagacacataccacatgcaattaaaacaaataaaa
acaaatatctgaagtggctattcaaaagcgtttatagtacaaaaagacaa
aatataagaacataaagtatccattttcaaagttaaatttacaggaaaaa
aagggatacattcaggaagaaaatgctttgtgtctgtctttctccactct
tatttctcccttcacctttgttaataaattgcaaattaaagtgtatattt
cttttttgatgtatagtgatatagttacacattttatgccactctcttgt
taataaggtattagaaatagtaatccaatagaaaaggtgtaggtaagccc
ttcccctcaacacacacagctgcttataagcacgagtacagagtgccact
gccgagagccactcaaagagcagttcctcaccaacactaagccaggctgc
aaagggcactttagtatgagctctgagtcatccttgaagatgcacgtgct
gacaggtagaaaagaaaagatgctgctgggtttcctcttgatttaagact
cctgtgacagacattaagattaaatacgagctgaagtttttgggccctgt
gcagctctgtaggccatgcttggaagctgcactcttcccagaccttgcca
taggccctctccagggggggtttctcctctagtctttgctttgccattat
gattgttaccgtcacccctaccgtttaggcttaccgattcatgaaat
gaattccaagcccatggtctgctcaaggactttctaggatgttggaacac
tggtgaaggcctagctatgtcagaattcaatcttaaaaggcacttataat
aaggtaatactaaaagagagcacgtggatccatacaccagactaactcgg
gaatggaatatgaatgtatgggttagagagaacgccagactccaggaggt
gagtttctgtgaaactctgcctcgtgagtggcttccaggcctctcggcct
gtcaagctgactcgaccagagtgcatggcaaaagtgaaggttgataggta
agaattcatagccgggaggtggtggcacatgcctttaatcccaatcccaa
catgttgggaggcaaaggcaggcagatttctgagttcgaggccagcctgg
tctacaaagtaagttccaggacagccaggggtatacagagaaaccctgtc
tcgaaaaacaacaacaacaaaaacaaaaacaaaaaaaagaatccattagg
acatatccaggaaaacaggatttctgccttgaaaggactgttttccacgt
gtagctagctcttagctctcaattccttgtagaagctctgccaccttcta
gccaggtcctgtggagcatctgagactgaaaagtgcgttcagcccactta
acagtatgccagagggcatggggatgcacacataatccaatggactccgt
tgctggatcaagtgggaagacagttctctcgatgcttcacattgtggcaa
aggctcaaacgacagatgccaccagaagtcaccgcctcttgtccagcaaa
gagtatttctcatcaaggcagtagaacacagtgagtatgaggctagctgg
cacctgccccacctttacttcatgaaaggtgagttgctcccaaggacgag
tggaaaaagacttttctgctgctcttcttgagagccagatcacattttag
tatgaattactttatgtataagagaaacaaattaccctattaaaatgggg
tacagaactaaacagaatttctcactgagaatcaaatggctgaagcacta
aaaaattgtcacatctagtcatcgggaatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58718232_58719449
seq2: B6Ng01-055G17.b_41_1237 (reverse)

seq1  ATTTCATGAACTGCGATAAAGCCTAAACGGGGTAGGGGTGACGTAAACAA  50
      ||||||||||   || | ||||||||||  |||||||||||||  |||  
seq2  ATTTCATGAA--TCGGT-AAGCCTAAAC--GGTAGGGGTGACGGTAAC--  43

seq1  AATCAATAATGGCAAAGCAAGAGACTAGAGAAGAAAACCACCCCTGAGAG  100
      |||| ||||||||||||||| ||||||||| ||||| || |||  |||||
seq2  AATC-ATAATGGCAAAGCAA-AGACTAGAGGAGAAACCCCCCCTGGAGAG  91

seq1  GGGCTAT-GCAAGTGTCTGGGAAAGAGTGCAGCCTTCCCAGCATGGCCTA  149
      || |||| ||||| ||||||| |||||||||| ||||| |||||||||||
seq2  GGCCTATGGCAAG-GTCTGGG-AAGAGTGCAG-CTTCCAAGCATGGCCTA  138

seq1  CAGAGCTGCACAGGGGCCCAAATACTTCAGCTCGTATTTAATCTTAATGT  199
      |||||||||||| ||||||||| |||||||||||||||||||||||||| 
seq2  CAGAGCTGCACA-GGGCCCAAAAACTTCAGCTCGTATTTAATCTTAATG-  186

seq1  TCTGGTCAACAGGGAGTCTGTAAATCCAAGAGGAAAACCCAGCAGCATCT  249
      ||| ||| ||| ||||||| ||||| ||||||| ||||||||||||||||
seq2  TCT-GTC-ACA-GGAGTCT-TAAAT-CAAGAGG-AAACCCAGCAGCATCT  230

seq1  TTTCTTTTTCTACCTGTCAGCACGTGCATCTTCAAGGATGACTCAGAGCT  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTC-TTTTCTACCTGTCAGCACGTGCATCTTCAAGGATGACTCAGAGCT  279

seq1  CATACTAAAGGTGCCCTTTGCAGCCTGGCTTAGTGTTGGTGAGGAACTGC  349
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATACTAAA-GTGCCCTTTGCAGCCTGGCTTAGTGTTGGTGAGGAACTGC  328

seq1  TCTTTGAGTGGCTCTCGGCAGTGGCACTCTGTACTCGTGCTTATAAGCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGTGGCTCTCGGCAGTGGCACTCTGTACTCGTGCTTATAAGCAG  378

seq1  CTGTGTGTGTTGAGGGGAAGGGCTTACCTACACCTTTTCTATTGGATTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTTGAGGGGAAGGGCTTACCTACACCTTTTCTATTGGATTAC  428

seq1  TATTTCTAATACCTTATTAACAAGAGAGTGGCATAAAATGTGTAACTATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAATACCTTATTAACAAGAGAGTGGCATAAAATGTGTAACTATA  478

seq1  TCACTATACATCAAAAAAGAAATATACACTTTAATTTGCAATTTATTAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATACATCAAAAAAGAAATATACACTTTAATTTGCAATTTATTAAC  528

seq1  AAAGGTGAAGGGAGAAATAAGAGTGGAGAAAGACAGACACAAAGCATTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGAAGGGAGAAATAAGAGTGGAGAAAGACAGACACAAAGCATTTT  578

seq1  CTTCCTGAATGTATCCCTTTTTTTCCTGTAAATTTAACTTTGAAAATGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAATGTATCCCTTTTTTTCCTGTAAATTTAACTTTGAAAATGGA  628

seq1  TACTTTATGTTCTTATATTTTGTCTTTTTGTACTATAAACGCTTTTGAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATGTTCTTATATTTTGTCTTTTTGTACTATAAACGCTTTTGAAT  678

seq1  AGCCACTTCAGATATTTGTTTTTATTTGTTTTAATTGCATGTGGTATGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTCAGATATTTGTTTTTATTTGTTTTAATTGCATGTGGTATGTG  728

seq1  TCTGCTGTCTGTCTGTCTGCATTTGAATATGTGCACTCCAGTGCAGGTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTCTGTCTGTCTGCATTTGAATATGTGCACTCCAGTGCAGGTAT  778

seq1  CTGGAGAAGCCAAAGGCCTTGGATTCCCAGGAGCTGGAGTTACAGAAAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAAGCCAAAGGCCTTGGATTCCCAGGAGCTGGAGTTACAGAAAGC  828

seq1  TCTTGTAAGGTGTACTGAGAACTGAACTCAGATCCTCTGGAAAAACAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAAGGTGTACTGAGAACTGAACTCAGATCCTCTGGAAAAACAGCA  878

seq1  GGTGTTCTTCTTGACCTTAGAGCTGTTACTCCAGTCCCTGAAAAAGCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCTTCTTGACCTTAGAGCTGTTACTCCAGTCCCTGAAAAAGCTGT  928

seq1  TTTTAAAAGTCCTAGCAACAATGGCTGACTTGGTAGTGTTGACTTCTCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGTCCTAGCAACAATGGCTGACTTGGTAGTGTTGACTTCTCCA  978

seq1  GTGCTTTGGAATGCTGACTCCAGGAAAGAGAGGACAGGACCCCTTTCACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGGAATGCTGACTCCAGGAAAGAGAGGACAGGACCCCTTTCACA  1028

seq1  CCTGTACACAGGCTGAGTCCCGAGGACGCCCAATTCCTCAAGGGTCAAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACACAGGCTGAGTCCCGAGGACGCCCAATTCCTCAAGGGTCAAGT  1078

seq1  CCGGAGCTCAGGGGTGAGAATGGTAACACCTGTTGCATTTGGACACTGTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGCTCAGGGGTGAGAATGGTAACACCTGTTGCATTTGGACACTGTT  1128

seq1  AGCACCCATGAATGGTGGCTAGACAGCAGTGGATTGAAACAGTGTCGCTA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCATGAATGGTGGCTAGACAGCAGTGGATTGAAACAGTGTCGCTA  1178

seq1  TGTTCTTCTCTGTGAATTC  1218
      |||||||||||||||||||
seq2  TGTTCTTCTCTGTGAATTC  1197

seq1: chr19_58637693_58638793
seq2: B6Ng01-055G17.g_69_1150

seq1  GAATTCCAAGCCCATGGTCTGCTCAAGGACTTTCTAGGATGTTGGAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCATGGTCTGCTCAAGGACTTTCTAGGATGTTGGAACAC  50

seq1  TGGTGAAGGCCTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGGCCTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATAAT  100

seq1  AAGGTAATACTAAAAGAGAGCACGTGGATCCATACACCAGACTAACTCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAATACTAAAAGAGAGCACGTGGATCCATACACCAGACTAACTCGG  150

seq1  GAATGGAATATGAATGTATGGGTTAGAGAGAACGCCAGACTCCAGGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAATATGAATGTATGGGTTAGAGAGAACGCCAGACTCCAGGAGGT  200

seq1  GAGTTTCTGTGAAACTCTGCCTCGTGAGTGGCTTCCAGGCCTCTCGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTGTGAAACTCTGCCTCGTGAGTGGCTTCCAGGCCTCTCGGCCT  250

seq1  GTCAAGCTGACTCGACCAGAGTGCATGGCAAAAGTGAAGGTTGATAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCTGACTCGACCAGAGTGCATGGCAAAAGTGAAGGTTGATAGGTA  300

seq1  AGAATTCATAGCCGGGAGGTGGTGGCACATGCCTTTAATCCCAATCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCATAGCCGGGAGGTGGTGGCACATGCCTTTAATCCCAATCCCAA  350

seq1  CATGTTGGGAGGCAAAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGGGAGGCAAAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGG  400

seq1  TCTACAAAGTAAGTTCCAGGACAGCCAGGGGTATACAGAGAAACCCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGTAAGTTCCAGGACAGCCAGGGGTATACAGAGAAACCCTGTC  450

seq1  TCGAAAAACAACAACAACAAAAACAAAAACAAAAAAAAGAATCCATTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAAACAACAACAACAAAAACAAAAACAAAAAAAAGAATCCATTAGG  500

seq1  ACATATCCAGGAAAACAGGATTTCTGCCTTGAAAGGACTGTTTTCCACGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCCAGGAAAACAGGATTTCTGCCTTGAAAGGACTGTTTTCCACGT  550

seq1  GTAGCTAGCTCTTAGCTCTCAATTCCTTGTAGAAGCTCTGCCACCTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTAGCTCTTAGCTCTCAATTCCTTGTAGAAGCTCTGCCACCTTCTA  600

seq1  GCCAGGTCCTGTGGAGCATCTGAGACTGAAAAGTGCGTTCAGCCCACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTCCTGTGGAGCATCTGAGACTGAAAAGTGCGTTCAGCCCACTTA  650

seq1  ACAGTATGCCAGAGGGCATGGGGATGCACACATAATCCAATGGACTCCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATGCCAGAGGGCATGGGGATGCACACATAATCCAATGGACTCCGT  700

seq1  TGCTGGATCAAGTGGGAAGACAGTTCTCTCGATGCTTCACATTGTGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGATCAAGTGGGAAGACAGTTCTCTCGATGCTTCACATTGTGGCAA  750

seq1  AGGCTCAAACGACAGATGCCACCAGAAGTCACCGCCTCTTGTCCAGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAAACGACAGATGCCACCAGAAGTCACCGCCTCTTGTCCAGCAAA  800

seq1  GAGTATTTCTCATCAAGGCAGTAGAACACAGTGAGTATGAGGCTAGCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTCTCATCAAGGCAGTAGAACACAGTGAGTATGAGGCTAGCTGG  850

seq1  CACCTGCCACACCTTTACTTCATGAAGGGTGAGTTGCTCCCAAGGACGAG  900
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  CACCTGCCCCACCTTTACTTCATGAAAGGTGAGTTGCTCCCAAGGACGAG  900

seq1  TGGATAAAGACTTTTCTGCTGCTCTTCTTGAGAGCCAGAATCACATTTTA  950
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGAAAAAGACTTTTCTGCTGCTCTTCTTGAGAGCCAG-ATCACATTTTA  949

seq1  GTATGAATTACTTTAATGTTATTAAGAGAAACAAATTACCCTATTAAAAA  1000
      |||||||||||||| ||||   ||||||||||||||||||||||| ||||
seq2  GTATGAATTACTTT-ATGT--ATAAGAGAAACAAATTACCCTATT-AAAA  995

seq1  TGGGGTACAGAACTAAACAAAGAATTCTCAACTGGAGAATACAAAATGGC  1050
      ||||||||||||||||||| | | ||||| ||| ||||||   |||||||
seq2  TGGGGTACAGAACTAAACAGA-ATTTCTC-ACT-GAGAAT--CAAATGGC  1040

seq1  TGAGAAGCACCTAAAAAAATGTTCAACATCCTTAGTCATCAGGGAAATGC  1100
      |  |||||| |||||||| |||   |||||  ||||||||  || |||||
seq2  T--GAAGCA-CTAAAAAATTGT--CACATC--TAGTCATC--GGGAATGC  1081

seq1  A  1101
      |
seq2  A  1082