BAC Information

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BAC

Clone NameB6Ng01-055L09
Chromosome19 (Build37)
Map Location 28,983,078 - 29,186,527
singlet/doubletdoublet
Overlap geneSlc1a1, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1
Upstream geneRfx3, LOC433235, Glis3, EG434460, EG627788, LOC545262
Downstream geneLOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055L09.bB6Ng01-055L09.g
ACCDH878079DH878080
length1,110607
definitionDH878079|Mus musculus domesticus DNA, BAC clone: B6Ng01-055L09, 5' end.DH878080|Mus musculus domesticus DNA, BAC clone: B6Ng01-055L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,185,408 - 29,186,527)(28,983,078 - 28,983,684)
sequence
gaattcactatgaagaccaggctggcctcaaactcaaatccacttgaaaa
gagcaaatttcaatgaactatactcaacagctccaatttaacgttattct
aactcaaatgtctacaaatagccattggactagcatagccacagcagtgt
gctcaactagcatgtgtcacctttaaggcacaataggaaaacctgtagaa
gtactatgatgtggatgactgtaaaaaaaaaaaaaaagtatgtgtgtgtg
tgagagagagacagagacagagacacacagagagacagacagacagacag
acagagagcagttacgataaaaacggatcctggaaaaagacaaaagttag
taacactggttgtttcagagttgagcctagaaaccagactctaaattcct
ttcttctttctatactttgaagcaaaatggagtcagctgtcccttaacaa
accatatgcacatatatgtttttaagtgcacagaaagtcacataaaatgc
aattactttttcacacgatttaaaagttaaaaaatgatttcatatcattc
tttaattcacatcattgacaaaacatcaaattttgtgataccctccagtc
attaagaatgttttaaagcctgagttgcagggtatgactgtaatctcaga
actcaagaggctgaggcaggaggaaatgacttccaagccagcatgggcta
cagagtaaaaccatgccagtaaaactggaaaagaaaagaaaaaaaagaac
agttgaaaggaattattccatggcacaaaggaacattcatactgtattaa
gagaaagggttaaaaggaacatattcaatgtggtttcaagttctatagaa
aataaccggaaagcaagacataaagggttaagtaagctagtgttgtcttt
tccccactaagtctaaagacagaaatgacaaacacactccgggttttcag
taaggagatgtccagtcactaagaaaaaaaatacattctttatatgagat
tatgtacacttttataggtcttgacctgcataacttaaggagaaggcatt
tttctcgatttgaaaccaggaaagctacaggctggtataagtatcttaat
caaatcccat
gaattcaggagggatcttgtcaaaaacatggtaatgaagttcacctggaa
ctacctaagattccaagtcgctcttccttttatacaaaggacatctgctg
gcctgaaggagcagtcaggaatgcttgtaccttggacagtgtcacaattt
ctcaattcggtgcctttaagggatgttcttagagaagacaagagtcttgt
gatggccaggcattatgtaaagcctacataaccactacgttatccctctg
ccttcgcctcagacatccttgccaatccactctaccgccccctctgctcc
ccttcccgagacaactgaaattcctggcacatgctaggtgctctgtaaac
gactgaacagctgagactggaggaggaaggaggcaagggtgggtaggtaa
agccttttatgaaaatacttgtataaaaaaaattgataaatccccgccct
ccctctacgtaactgcctccgttttgtggattgttgctgttcagtacttg
ttagctttagagtgacctgccacatgctctcctcctgctgtgacatcctg
ctcctcttaagcccctacagttctggggtgtgcacttgtacaggtgtgtg
tgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29185408_29186527
seq2: B6Ng01-055L09.b_46_1155 (reverse)

seq1  ATGGGGTTTTGTTTAAGATACTTTATTACAGCCTGTAGCTTTTCCTGTGT  50
      || ||| |||| ||||||||| ||||  ||||||||||| |||||||  |
seq2  AT-GGGATTTGATTAAGATAC-TTATACCAGCCTGTAGC-TTTCCTGGTT  47

seq1  TCATAATCGAGGAAAAATGCCCTGTCTCCTTAAGTTATGCAGGTCAAGAA  100
      ||| |||||| ||||||||||   ||||||||||||||||||||||||| 
seq2  TCA-AATCGA-GAAAAATGCC--TTCTCCTTAAGTTATGCAGGTCAAGAC  93

seq1  CTTATAAAGTGTTACATAATCTCATATAAAGAATGTATTTTTTTTCTTAG  150
      ||   |||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAGTG-TACATAATCTCATATAAAGAATGTATTTTTTTTCTTAG  142

seq1  TGACTGGACATCTCCTAACTGAGAACCCGGAGTGTGTTTGTCATTTCTGT  200
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  TGACTGGACATCTCCTTACTGAAAACCCGGAGTGTGTTTGTCATTTCTGT  192

seq1  CTTTAGGACTTAGTGGGGAAAAGGACAACACTAGCTTACTTAACCCTTTA  250
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTTA-GACTTAGTGGGGAAAA-GACAACACTAGCTTACTTAACCCTTTA  240

seq1  TTGTCTTGCTTTCCGGTTATTTTCTATAGAACTTGAAACCACATTGAATA  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTCTTGCTTTCCGGTTATTTTCTATAGAACTTGAAACCACATTGAATA  289

seq1  TGTTCCTTTTAACCC-TTCTCTTAATACAGTATGAATGTTCCTTTGTGCC  349
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTTTAACCCTTTCTCTTAATACAGTATGAATGTTCCTTTGTGCC  339

seq1  ATGGAATAATTCCTTTCAACTGTTCTTTTTTTTCTTTTCTTTTCCAGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATAATTCCTTTCAACTGTTCTTTTTTTTCTTTTCTTTTCCAGTTT  389

seq1  TACTGGCATGGTTTTACTCTGTAGCCCATGCTGGCTTGGAAGTCATTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCATGGTTTTACTCTGTAGCCCATGCTGGCTTGGAAGTCATTTCC  439

seq1  TCCTGCCTCAGCCTCTTGAGTTCTGAGATTACAGTCATACCCTGCAACTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCAGCCTCTTGAGTTCTGAGATTACAGTCATACCCTGCAACTC  489

seq1  AGGCTTTAAAACATTCTTAATGACTGGAGGGTATCACAAAATTTGATGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTAAAACATTCTTAATGACTGGAGGGTATCACAAAATTTGATGTT  539

seq1  TTGTCAATGATGTGAATTAAAGAATGATATGAAATCATTTTTTAACTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATGATGTGAATTAAAGAATGATATGAAATCATTTTTTAACTTTT  589

seq1  AAATCGTGTGAAAAAGTAATTGCATTTTATGTGACTTTCTGTGCACTTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGTGTGAAAAAGTAATTGCATTTTATGTGACTTTCTGTGCACTTAA  639

seq1  AAACATATATGTGCATATGGTTTGTTAAGGGACAGCTGACTCCATTTTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATATGTGCATATGGTTTGTTAAGGGACAGCTGACTCCATTTTGC  689

seq1  TTCAAAGTATAGAAAGAAGAAAGGAATTTAGAGTCTGGTTTCTAGGCTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTATAGAAAGAAGAAAGGAATTTAGAGTCTGGTTTCTAGGCTCA  739

seq1  ACTCTGAAACAACCAGTGTTACTAACTTTTGTCTTTTTCCAGGATCCGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAACAACCAGTGTTACTAACTTTTGTCTTTTTCCAGGATCCGTT  789

seq1  TTTATCGTAACTGCTCTCTGTCTGTCTGTCTGTCTGTCTCTCTGTGTGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCGTAACTGCTCTCTGTCTGTCTGTCTGTCTGTCTCTCTGTGTGTC  839

seq1  TCTGTCTCTGTCTCTCTCTCACACACACACATACTTTTTTTTTTTTTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTGTCTCTCTCTCACACACACACATACTTTTTTTTTTTTTTTA  889

seq1  CAGTCATCCACATCATAGTACTTCTACAGGTTTTCCTATTGTGCCTTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATCCACATCATAGTACTTCTACAGGTTTTCCTATTGTGCCTTAAA  939

seq1  GGTGACACATGCTAGTTGAGCACACTGCTGTGGCTATGCTAGTCCAATGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACACATGCTAGTTGAGCACACTGCTGTGGCTATGCTAGTCCAATGG  989

seq1  CTATTTGTAGACATTTGAGTTAGAATAACGTTAAATTGGAGCTGTTGAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGTAGACATTTGAGTTAGAATAACGTTAAATTGGAGCTGTTGAGT  1039

seq1  ATAGTTCATTGAAATTTGCTCTTTTCAAGTGGATTTGAGTTTGAGGCCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCATTGAAATTTGCTCTTTTCAAGTGGATTTGAGTTTGAGGCCAG  1089

seq1  CCTGGTCTTCATAGTGAATTC  1120
      |||||||||||||||||||||
seq2  CCTGGTCTTCATAGTGAATTC  1110

seq1: chr19_28983078_28983684
seq2: B6Ng01-055L09.g_68_674

seq1  GAATTCAGGAGGGATCTTGTCAAAAACATGGTAATGAAGTTCACCTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGGGATCTTGTCAAAAACATGGTAATGAAGTTCACCTGGAA  50

seq1  CTACCTAAGATTCCAAGTCGCTCTTCCTTTTATACAAAGGACATCTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAAGATTCCAAGTCGCTCTTCCTTTTATACAAAGGACATCTGCTG  100

seq1  GCCTGAAGGAGCAGTCAGGAATGCTTGTACCTTGGACAGTGTCACAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAGGAGCAGTCAGGAATGCTTGTACCTTGGACAGTGTCACAATTT  150

seq1  CTCAATTCGGTGCCTTTAAGGGATGTTCTTAGAGAAGACAAGAGTCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTCGGTGCCTTTAAGGGATGTTCTTAGAGAAGACAAGAGTCTTGT  200

seq1  GATGGCCAGGCATTATGTAAAGCCTACATAACCACTACGTTATCCCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCAGGCATTATGTAAAGCCTACATAACCACTACGTTATCCCTCTG  250

seq1  CCTTCGCCTCAGACATCCTTGCCAATCCACTCTACCGCCCCCTCTGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGCCTCAGACATCCTTGCCAATCCACTCTACCGCCCCCTCTGCTCC  300

seq1  CCTTCCCGAGACAACTGAAATTCCTGGCACATGCTAGGTGCTCTGTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCGAGACAACTGAAATTCCTGGCACATGCTAGGTGCTCTGTAAAC  350

seq1  GACTGAACAGCTGAGACTGGAGGAGGAAGGAGGCAAGGGTGGGTAGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAACAGCTGAGACTGGAGGAGGAAGGAGGCAAGGGTGGGTAGGTAA  400

seq1  AGCCTTTTATGAAAATACTTGTATAAAAAAAATTGATAAATCCCCGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTATGAAAATACTTGTATAAAAAAAATTGATAAATCCCCGCCCT  450

seq1  CCCTCTACGTAACTGCCTCCGTTTTGTGGATTGTTGCTGTTCAGTACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTACGTAACTGCCTCCGTTTTGTGGATTGTTGCTGTTCAGTACTTG  500

seq1  TTAGCTTTAGAGTGACCTGCCACATGCTCTCCTCCTGCTGTGACATCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTAGAGTGACCTGCCACATGCTCTCCTCCTGCTGTGACATCCTG  550

seq1  CTCCTCTTAAGCCCCTACAGTTCTGGGGTGTGCACTTGTACAGGTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTAAGCCCCTACAGTTCTGGGGTGTGCACTTGTACAGGTGTGTG  600

seq1  TGTGTGT  607
      |||||||
seq2  TGTGTGT  607