BAC Information

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BAC

Clone NameB6Ng01-057F23
Chromosome19 (Build37)
Map Location 58,324,119 - 58,325,105
singlet/doubletsinglet
Overlap geneGfra1
Upstream geneAI450540, Trub1, LOC100043038, Atrnl1
Downstream geneLOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057F23.bB6Ng01-057F23.g
ACCDH879260DH879261
length758987
definitionDH879260|Mus musculus domesticus DNA, BAC clone: B6Ng01-057F23, 5' end.DH879261|Mus musculus domesticus DNA, BAC clone: B6Ng01-057F23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaggttctcgggcagctttattggatacgatttgcggtcatttca
cttcaccgtgtaaagcacgcagttcagaggggtcaagtctgttcatagag
ttgcatgtctacctttcagtctgtttagaatgtgcttgttactctgagaa
actcagtgcaacctcgtggtttcttactccctcactcttatctcttccgg
tccttgacatccactagtcccgttctctgtctgtaggtttatgtggtgtg
ggcacttggtatagatagactttgtttactcatgtattcataatatgtgg
tcctgtgtgactggctcccttcacttagcacagtgtcttcagggttcagt
cttgtatagcacatactactgcttcgtttaccaccaattaatattctgct
gtacaaatatgctgcatattgcttacctggtcattggatggcttagactt
tgtggttattaggagtaatgttgaattatgaatatttgtgcacaagtttc
tgtgtgggtacattttctgttttgctttgtgtgtgtgtgtgtgcgtatat
gtgtatgtgtgtgtgcgtgcttgcatgtgtgtgcatctgagtgtggagcc
ccaaagtttatgttagctatcttccttcccttggtcactctgaactttta
tttaatgaggcagagtctcttactgatctcacattctccatcgtggggta
gtcttgacagtcatattgtcccagaaatacccttgtgtatgccttccaag
ggatgccc
gaattcaagaaattggatttatttatagtatgtgacccaagtgtgctcag
aggtattcttgtaggttactcggaacaagagagcatatttatagtcacga
taaggcagacatcctactgctttttattaagcatggttattacacagcaa
ttgggttaagcaattgtccaaggctgaattactgtccttctgatgggctt
ggccacacactgccctctggaccacaggcccaggtagactaatggctctt
tcctgaatgtagtaatgtaggggggatagtctccagatcccatcccagtt
tttgagatgagtggttttaaacaacgctaaggagaagacacagtaaacgt
gtaaacataagcaagaggctcaaccagaagccatgtctacagggggcaga
cctgcttcataaagctcaacttcactttctagatgaatcctggtgtccca
tcagcatgggctcctcctagctcatggtcaacaggggcccactcagaaag
ataaagcagccacagaaaaccctcactgaagctggggggactctgatctg
tttacttatcccaaccctcctaggcagtgaggctctccatgcccacagga
ggatcaaggagatcaaaagactcttcctcttggtctgtggagtactcttg
acttcattgtagcacccctttcagcatcgtcttcccaaggatgccttcaa
cacacaacctcctctttgtcttacaaaagcaccttgggagagcgaacatc
tccctactagttgcatgattcctttgccagtcctcagcccactcactgcc
gttattttgttgcttaaaagagattagcttaaaaatgtgttacagagaca
gcagagattgctcagtggttacagaatacttcttactcctccagaggatt
gaatcggattctaaaatcctgcacaaaggctcacaattatgcgttaactc
cagtacgggaaatcgaactcctcacggcactacaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58324119_58325105
seq2: B6Ng01-057F23.g_66_1052

seq1  GAATTCAAGAAATTGGATTTATTTATAGTATGTGACCCAAGTGTGCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAATTGGATTTATTTATAGTATGTGACCCAAGTGTGCTCAG  50

seq1  AGGTATTCTTGTAGGTTACTCGGAACAAGAGAGCATATTTATAGTCACGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTCTTGTAGGTTACTCGGAACAAGAGAGCATATTTATAGTCACGA  100

seq1  TAAGGCAGACATCCTACTGCTTTTTATTAAGCATGGTTATTACACAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAGACATCCTACTGCTTTTTATTAAGCATGGTTATTACACAGCAA  150

seq1  TTGGGTTAAGCAATTGTCCAAGGCTGAATTACTGTCCTTCTGATGGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTAAGCAATTGTCCAAGGCTGAATTACTGTCCTTCTGATGGGCTT  200

seq1  GGCCACACACTGCCCTCTGGACCACAGGCCCAGGTAGACTAATGGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACACTGCCCTCTGGACCACAGGCCCAGGTAGACTAATGGCTCTT  250

seq1  TCCTGAATGTAGTAATGTAGGGGGGATAGTCTCCAGATCCCATCCCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATGTAGTAATGTAGGGGGGATAGTCTCCAGATCCCATCCCAGTT  300

seq1  TTTGAGATGAGTGGTTTTAAACAACGCTAAGGAGAAGACACAGTAAACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATGAGTGGTTTTAAACAACGCTAAGGAGAAGACACAGTAAACGT  350

seq1  GTAAACATAAGCAAGAGGCTCAACCAGAAGCCATGTCTACAGGGGGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATAAGCAAGAGGCTCAACCAGAAGCCATGTCTACAGGGGGCAGA  400

seq1  CCTGCTTCATAAAGCTCAACTTCACTTTCTAGATGAATCCTGGTGTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCATAAAGCTCAACTTCACTTTCTAGATGAATCCTGGTGTCCCA  450

seq1  TCAGCATGGGCTCCTCCTAGCTCATGGTCAACAGGGGCCCACTCAGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGGGCTCCTCCTAGCTCATGGTCAACAGGGGCCCACTCAGAAAG  500

seq1  ATAAAGCAGCCACAGAAAACCCTCACTGAAGCTGGGGGGACTCTGATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAGCCACAGAAAACCCTCACTGAAGCTGGGGGGACTCTGATCTG  550

seq1  TTTACTTATCCCAACCCTCCTAGGCAGTGAGGCTCTCCATGCCCACAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTATCCCAACCCTCCTAGGCAGTGAGGCTCTCCATGCCCACAGGA  600

seq1  GGATCAAGGAGATCAAAAGACTCTTCCTCTTGGTCTGTGGAGTACTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGGAGATCAAAAGACTCTTCCTCTTGGTCTGTGGAGTACTCTTG  650

seq1  ACTTCATTGTAGCACCCCTTTCAGCATCGTCTTCCCAAGGATGCCTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTGTAGCACCCCTTTCAGCATCGTCTTCCCAAGGATGCCTTCAA  700

seq1  CACACAACCTCCTCTTTGTCTTACAAAAGCACCTT-GGAGAGCGAACATC  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACACAACCTCCTCTTTGTCTTACAAAAGCACCTTGGGAGAGCGAACATC  750

seq1  TCCCTACTAGTTGCATGA-TCCTTTGCCAGTCCTCAGCCCACTCACTGCC  798
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCCTACTAGTTGCATGATTCCTTTGCCAGTCCTCAGCCCACTCACTGCC  800

seq1  GTTATTTTGTTGCTTAAAAGAGATTAGCTTAAAAATGTGTTACAGAGACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTGTTGCTTAAAAGAGATTAGCTTAAAAATGTGTTACAGAGACA  850

seq1  GCAGAGATTGCTCAGTGGTTACAAGAATACTTCTTACTCCTCCAGAGGAT  898
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCAGAGATTGCTCAGTGGTTAC-AGAATACTTCTTACTCCTCCAGAGGAT  899

seq1  CTGAATCGGATTCTAAAA-CCTGCACAAAGGCTCACAACTATGCGTTAAC  947
       ||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  -TGAATCGGATTCTAAAATCCTGCACAAAGGCTCACAATTATGCGTTAAC  948

seq1  TCCAGTACCGGGAGATCGAAC-CCCCACAGGCACTACAAGG  987
      ||||||| ||||| ||||||| || ||| ||||||||||||
seq2  TCCAGTA-CGGGAAATCGAACTCCTCAC-GGCACTACAAGG  987