BAC Information

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BAC

Clone NameB6Ng01-058J01
Chromosome19 (Build37)
Map Location 56,593,093 - 56,706,976
singlet/doubletdoublet
Overlap geneDclre1a, Nhlrc2
Upstream geneVti1a, Tcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik
Downstream geneAdrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1, LOC100043038, Atrnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058J01.bB6Ng01-058J01.g
ACCDH880107DH880108
length1,120426
definitionDH880107|Mus musculus domesticus DNA, BAC clone: B6Ng01-058J01, 5' end.DH880108|Mus musculus domesticus DNA, BAC clone: B6Ng01-058J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,593,093 - 56,594,210)(56,706,545 - 56,706,976)
sequence
gaattccagaagatctgacctcttgcagacagcaagctactgtagtatat
acacatatatgctggcaaacattcgtatatatatgtatatatatatatat
atatatatatatatatatatatatacacacatatatataaatgtcattga
aataaataaaatttatcctattattaatttaagttattcatattggacca
aaattgtaggtttttcatcgttagacatagttctcctaacaaatcaagat
taaagtctaaagctaactactctgcttagagtttaagtaccatacagcaa
ctgggctttctagatactgatttcttgcaagatagagttacaggaaagag
cactcaattttccatcatcagaggagtacagacaacaactgcacacagat
gctacttcacgcccaccgagatggaggcggtcacacacagcaagtacagc
tgaggtgtgaagaaaatggggaccctcagatgctgttggaggaaatgcaa
agtgttgttgcacttgggaaaaagctctctgccgtttctcagcgtttcac
tcagctcacatattccctgtgactttactggcacatacccatccatgttc
acataaaaacttacacacagtcgttcataaagccacgctccgtgagagcc
aaggaatggaaacgacttgggaatgatgggtgaagaacatgtgctatttt
caaataatgaatgccccttttacctgacaaaagcatattgtggttggttg
tcaagtattaagaaccactcatgtgtatatgtcagataggtgactagtat
ggtatgtgaaatagatttcggtaaagcagttaaaaaacaaaaccaaaaat
agggcagatcggtcctcccatggatgagagacactgttcactgccgtcac
catcaccatctggctgacctttgcacaacagggacctttgacctttgatc
ctcttgcagaccggcactgttgctttttagttcatttacacttgtagctg
cttgtcccagatgacatagagtcagagttcagaccctcactagaactccg
ccacagctcttttcataagacatttgaaacagtctaacattaatgtaacg
tgagtccgaacctgctttga
tccatagcagaacttatctcagctagatctccgccaaagcagatgtccct
tagaatagagaggatgccctgggtggctgaagggatggagcagtgggtaa
cgagagcaggaacttgagttcctatccctagatgaggtggctagcgctgt
aacctcggtgctgggagaggagacagggggactgtctgagctcatggccg
gctagccagcctagccaaactcatgagcttcatgtttagtgagagactct
gcctcaaaacgtaggtgaagaatgacagaggaagcggcctgacgacagcc
tctggcctctaaatagtagttcatagctatcctcggactccctcagatgg
tcccacagcttagccatatctggaagctgttacaattttggtgactaacc
agggggtgtagggatgggggtaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_56593093_56594210
seq2: B6Ng01-058J01.b_44_1163

seq1  GAATTCCAGAAGATCTGACCTCTTGCAGACAGCAAGCTACTGTAGTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGATCTGACCTCTTGCAGACAGCAAGCTACTGTAGTATAT  50

seq1  ACACATATATGCTGGCAAACATTCGTATATATATGTATATATATATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATATGCTGGCAAACATTCGTATATATATGTATATATATATATAT  100

seq1  ATATATATATATATATATATATATACACACATATATATAAATGTCATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATACACACATATATATAAATGTCATTGA  150

seq1  AATAAATAAAATTTATCCTATTATTAATTTAAGTTATTCATATTGGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAAATTTATCCTATTATTAATTTAAGTTATTCATATTGGACCA  200

seq1  AAATTGTAGGTTTTTCATCGTTAGACATAGTTCTCCTAACAAATCAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTAGGTTTTTCATCGTTAGACATAGTTCTCCTAACAAATCAAGAT  250

seq1  TAAAGTCTAAAGCTAACTACTCTGCTTAGAGTTTAAGTACCATACAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTAAAGCTAACTACTCTGCTTAGAGTTTAAGTACCATACAGCAA  300

seq1  CTGGGCTTTCTAGATACTGATTTCTTGCAAGATAGAGTTACAGGAAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTTCTAGATACTGATTTCTTGCAAGATAGAGTTACAGGAAAGAG  350

seq1  CACTCAATTTTCCATCATCAGAGGAGTACAGACAACAACTGCACACAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAATTTTCCATCATCAGAGGAGTACAGACAACAACTGCACACAGAT  400

seq1  GCTACTTCACGCCCACCGAGATGGAGGCGGTCACACACAGCAAGTACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTCACGCCCACCGAGATGGAGGCGGTCACACACAGCAAGTACAGC  450

seq1  TGAGGTGTGAAGAAAATGGGGACCCTCAGATGCTGTTGGAGGAAATGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGTGAAGAAAATGGGGACCCTCAGATGCTGTTGGAGGAAATGCAA  500

seq1  AGTGTTGTTGCACTTGGGAAAAAGCTCTCTGCCGTTTCTCAGCGTTTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTTGCACTTGGGAAAAAGCTCTCTGCCGTTTCTCAGCGTTTCAC  550

seq1  TCAGCTCACATATTCCCTGTGACTTTACTGGCACATACCCATCCATGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCACATATTCCCTGTGACTTTACTGGCACATACCCATCCATGTTC  600

seq1  ACATAAAAACTTACACACAGTCGTTCATAAAGCCACGCTCCGTGAGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAACTTACACACAGTCGTTCATAAAGCCACGCTCCGTGAGAGCC  650

seq1  AAGGAATGGAAACGACTTGGGAATGATGGGTGAAGAACATGTGCTATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGGAAACGACTTGGGAATGATGGGTGAAGAACATGTGCTATTTT  700

seq1  CAAATAATGAATGCCCCTTTTACCTGACAAAAGCATATTGTGGTTGGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATGAATGCCCCTTTTACCTGACAAAAGCATATTGTGGTTGGTTG  750

seq1  TCAAGTATTAAGAACCACTCATGTGTATATGTCAGATAGGTGACTAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATTAAGAACCACTCATGTGTATATGTCAGATAGGTGACTAGTAT  800

seq1  GGTATGTGAAATAGATTTCGGTAAAGCAGTTAAAAAACAAAACCAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTGAAATAGATTTCGGTAAAGCAGTTAAAAAACAAAACCAAAAAT  850

seq1  AGGGCAGATCGGTCCTCCCATGGATGAGAGACACTG-TCACTGCCGTCAC  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGGGCAGATCGGTCCTCCCATGGATGAGAGACACTGTTCACTGCCGTCAC  900

seq1  CATCACCATCTGGCTGACC-TTGCACAACAGGGACCTTTGACCTTTGATC  948
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATCACCATCTGGCTGACCTTTGCACAACAGGGACCTTTGACCTTTGATC  950

seq1  CCCTTGCAGACCGGCACTGTTGC-TTTTAGTTCATTTACACTTGTAGCTG  997
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCTTGCAGACCGGCACTGTTGCTTTTTAGTTCATTTACACTTGTAGCTG  1000

seq1  CTTGTCCCAGATGACATAGAGTCAGAGTTCAGACCCTCACTAGGAACTCC  1047
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTGTCCCAGATGACATAGAGTCAGAGTTCAGACCCTCACTA-GAACTCC  1049

seq1  GCCACAGCTC-TTTCATAAGACATTTGAAACAGTCTAACATT-ATGTAAC  1095
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  GCCACAGCTCTTTTCATAAGACATTTGAAACAGTCTAACATTAATGTAAC  1099

seq1  GGTGAGTCCGAACCCTGCTTTGA  1118
       ||||||||||| ||||||||||
seq2  -GTGAGTCCGAA-CCTGCTTTGA  1120

seq1: chr19_56706545_56706976
seq2: B6Ng01-058J01.g_65_496 (reverse)

seq1  GGCCTACCCCCATCCCTACACCCCCTGGTTAGTCACCAAAATTGTAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACCCCCATCCCTACACCCCCTGGTTAGTCACCAAAATTGTAACAG  50

seq1  CTTCCAGATATGGCTAAGCTGTGGGACCATCTGAGGGAGTCCGAGGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGATATGGCTAAGCTGTGGGACCATCTGAGGGAGTCCGAGGATAG  100

seq1  CTATGAACTACTATTTAGAGGCCAGAGGCTGTCGTCAGGCCGCTTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAACTACTATTTAGAGGCCAGAGGCTGTCGTCAGGCCGCTTCCTCT  150

seq1  GTCATTCTTCACCTACGTTTTGAGGCAGAGTCTCTCACTAAACATGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCTTCACCTACGTTTTGAGGCAGAGTCTCTCACTAAACATGAAGC  200

seq1  TCATGAGTTTGGCTAGGCTGGCTAGCCGGCCATGAGCTCAGACAGTCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGTTTGGCTAGGCTGGCTAGCCGGCCATGAGCTCAGACAGTCCCC  250

seq1  CTGTCTCCTCTCCCAGCACCGAGGTTACAGCGCTAGCCACCTCATCTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCTCTCCCAGCACCGAGGTTACAGCGCTAGCCACCTCATCTAGG  300

seq1  GATAGGAACTCAAGTTCCTGCTCTCGTTACCCACTGCTCCATCCCTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAACTCAAGTTCCTGCTCTCGTTACCCACTGCTCCATCCCTTCAG  350

seq1  CCACCCAGGGCATCCTCTCTATTCTAAGGGACATCTGCTTTGGCGGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAGGGCATCCTCTCTATTCTAAGGGACATCTGCTTTGGCGGAGAT  400

seq1  CTAGCTGAGATAAGTTCTGCTATGGAGAATTC  432
      ||||||||||||||||||||||||||||||||
seq2  CTAGCTGAGATAAGTTCTGCTATGGAGAATTC  432