BAC Information

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BAC

Clone NameB6Ng01-058N05
Chromosome19 (Build37)
Map Location 57,242,041 - 57,385,853
singlet/doubletdoublet
Overlap geneAblim1, EG668259
Upstream geneHabp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2
Downstream geneAI450540, Trub1, LOC100043038, Atrnl1, Gfra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058N05.bB6Ng01-058N05.g
ACCDH880297DH880298
length1,0381,045
definitionDH880297|Mus musculus domesticus DNA, BAC clone: B6Ng01-058N05, 5' end.DH880298|Mus musculus domesticus DNA, BAC clone: B6Ng01-058N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,384,807 - 57,385,853)(57,242,041 - 57,243,100)
sequence
gaattcccaggtatctggaaaccaattagatggatcccagtactttgcgc
tagagataccaactaaagatgatcaggtggcagggattgggaggtgtctt
agcctacagtgcttgccacacaagcagagaacctgggttcagatctctgt
cactcataggaatggctaggtctaggtatctagcagtttgctgtcctagc
agtagagggatggggacaggagaatccctgcggtcagtgagaggctctgt
ctcgaaaaataaactggagagcagtagaagaaaatattccatatctacct
ctagtcttcatgtgcacctgtatacacacatacacacacgcacacacaca
gagagagagagagacagagacagagacagagagacagagacagagaaaga
gagacagagatgaagagagagatggaaagagagagagagagagagatgga
gaatagccagcttagggtatggggagagatgactctgtggttaagaacac
ttgttgttcttccagaggaattgagttcagttcccagagcctgcatcaga
taactcaaaactgcccatcacctcaactccaggagacccacagccctctt
ctgacctccacagaccctggcatgaatgtacacataataacacgtgtgca
tgtgcacatgtgtgtgtatacagacacagatgaaaagataaatcatttaa
aagaatgttcagtgtagattttgtggtttgaatcttccacaggctccctt
agctctatatggggtagcatggcagccatagaatgaagagcattattttc
taatgtagggcctacatcctcttaatgggttcttaaaggagcagtttgaa
gtcataactataatactaaaatcgacccatatgattaaaaaaatacctgc
acagcaagcagatatgtttaagtgtgaagtgttttaacccaacacacagc
agggctttgaattagaatgaattttcctattttactttaatacaaacgcg
tgaacactatagtaggtccttccagctgactactgact
gaattcagcttctcgcctatggtaagggagctcgctagtatgtctctgct
gtccctgtgccttgtctcctcctgccttctcatatgtgactcaatgccta
ggagttttccaagcaggtattaaaagcctggtctcagctctgggcagggc
ttggggggtttcaaggaactgcttccatgtttctggattttgccagtttt
ccactgagtcacaaactggcccaagatctgtgcccacgtgagcacagggc
aaagtcttagtgttagcaaggacagcccaaaatgtgccctcttaagttcc
tgtcagctccctctgccaggcaggtggtgggtggctctgacagatgcctt
cctatgtttcttcttggaagtcactggctagactccatcagagggtgcta
tggtagtaagcctgcgataaacaccattgacaggctatttcactcacagc
acctactaatggatcaataagctacaccgttcctgacctgttcagttgta
cattgtgctgcaggttggcattgcccgggtagtcagcagtaaacaattgg
aaggaaagctgccgccaaggggcttatgatctgccagagacaacaaaaca
accccaaaaacacccccaaaaacccacagaagtagctggggtaccaggaa
gccctctggtcaccctagcaggtaactttctctctctcttttttttcctg
ttacctgacgtcaatcattctgcaagagaaagcagttgttttagttcatt
ctgtgctgttgttcctgtggtgtggtaatttcaagtaccgacccctcccc
cttcacggtctagtcattctgtgatactgttgtggcgatggatacattgt
ttcattcccccccccccccccccattgctcccgggtggtagccaatgcct
acagagattcagaacctggaaactcctccaggcattcacctccacttggg
tatgaactgctggcattgtgcgctgcttctgggagaatgacttttaggat
gggacagatgtctcagtggggcacttctatcttacaattgagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_57384807_57385853
seq2: B6Ng01-058N05.b_49_1086 (reverse)

seq1  AGTCAGTAGTCAGCTGGAAGAGCCTGACTATAGTGTTCACTGTGTTTTGT  50
      ||||||||||||||||||||  ||| |||||||||||||| | | |||||
seq2  AGTCAGTAGTCAGCTGGAAGGACCT-ACTATAGTGTTCAC-GCG-TTTGT  47

seq1  TATTTGAAGTAAAAATAGGAAAATTTCATTTCTAACTTCAAAGCCTTGCT  100
         || |||| |||||||||||| |||| |||||| ||||||||| ||||
seq2  --ATTAAAGT-AAAATAGGAAAA-TTCA-TTCTAA-TTCAAAGCCCTGCT  91

seq1  GTGTGTTTGGGTTTAAACACTTCACAACTTAAACATATTCTGC-TGCTGT  149
      ||||| ||||||| ||||||||||| ||||||||||| ||||| ||||||
seq2  GTGTG-TTGGGTTAAAACACTTCAC-ACTTAAACATA-TCTGCTTGCTGT  138

seq1  GCTGGTATTTTTTTAATCATATGGGTGGATTTTAGTATTATAGTTATGAC  199
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCAGGTATTTTTTTAATCATATGGGTCGATTTTAGTATTATAGTTATGAC  188

seq1  TTAAAACTGCTCCTTTAAGAACCCATT-AGAGGATGTAGGCCCTACATTA  248
      || |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCAAACTGCTCCTTTAAGAACCCATTAAGAGGATGTAGGCCCTACATTA  238

seq1  GAAAATAATGCTCTTCATTCTATGGCTGCCATGCTACCCCATATAGAGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATGCTCTTCATTCTATGGCTGCCATGCTACCCCATATAGAGCT  288

seq1  AAGGGAGCCTGTGGAAGATTCAAACCACAAAATCTACACTGAACATTC-T  347
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGGGAGCCTGTGGAAGATTCAAACCACAAAATCTACACTGAACATTCTT  338

seq1  TTAAATGATTTATCTTTTCATCTGTGTCTGTATACACACACATGTGCACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGATTTATCTTTTCATCTGTGTCTGTATACACACACATGTGCACA  388

seq1  TGCACACGTGTTATTATGTGTACATTCATGCCAGGGTCTGTGGAGGTCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACGTGTTATTATGTGTACATTCATGCCAGGGTCTGTGGAGGTCAG  438

seq1  AAGAGGGCTGTGGGTCTCCTGGAGTTGAGGTGATGGGCAGTTTTGAGTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCTGTGGGTCTCCTGGAGTTGAGGTGATGGGCAGTTTTGAGTTA  488

seq1  TCTGATGCAGGCTCTGGGAACTGAACTCAATTCCTCTGGAAGAACAACAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCAGGCTCTGGGAACTGAACTCAATTCCTCTGGAAGAACAACAA  538

seq1  GTGTTCTTAACCACAGAGTCATCTCTCCCCATACCCTAAGCTGGCTATTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTAACCACAGAGTCATCTCTCCCCATACCCTAAGCTGGCTATTC  588

seq1  TCCATCTCTCTCTCTCTCTCTCTTTCCATCTCTCTCTTCATCTCTGTCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCTCTCTCTCTCTCTCTTTCCATCTCTCTCTTCATCTCTGTCTC  638

seq1  TCTTTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTC  688

seq1  TGTGTGTGTGCGTGTGTGTATGTGTGTATACAGGTGCACATGAAGACTAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGCGTGTGTGTATGTGTGTATACAGGTGCACATGAAGACTAG  738

seq1  AGGTAGATATGGAATATTTTCTTCTACTGCTCTCCAGTTTATTTTTCGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATATGGAATATTTTCTTCTACTGCTCTCCAGTTTATTTTTCGAG  788

seq1  ACAGAGCCTCTCACTGACCGCAGGGATTCTCCTGTCCCCATCCCTCTACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCTCTCACTGACCGCAGGGATTCTCCTGTCCCCATCCCTCTACT  838

seq1  GCTAGGACAGCAAACTGCTAGATACCTAGACCTAGCCATTCCTATGAGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGACAGCAAACTGCTAGATACCTAGACCTAGCCATTCCTATGAGTG  888

seq1  ACAGAGATCTGAACCCAGGTTCTCTGCTTGTGTGGCAAGCACTGTAGGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATCTGAACCCAGGTTCTCTGCTTGTGTGGCAAGCACTGTAGGCT  938

seq1  AAGACACCTCCCAATCCCTGCCACCTGATCATCTTTAGTTGGTATCTCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACCTCCCAATCCCTGCCACCTGATCATCTTTAGTTGGTATCTCTA  988

seq1  GCGCAAAGTACTGGGATCCATCTAATTGGTTTCCAGATACCTGGGAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAAAGTACTGGGATCCATCTAATTGGTTTCCAGATACCTGGGAATTC  1038

seq1: chr19_57242041_57243100
seq2: B6Ng01-058N05.g_68_1112

seq1  GAATTCAGCTTCTCGCCTATGGTAAGGGAGCTCGCTAGTATGTCTCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTCTCGCCTATGGTAAGGGAGCTCGCTAGTATGTCTCTGCT  50

seq1  GTCCCTGTGCCTTGTCTCCTCCTGCCTTCTCATATGTGACTCAATGCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTGCCTTGTCTCCTCCTGCCTTCTCATATGTGACTCAATGCCTA  100

seq1  GGAGTTTTCCAAGCAGGTATTAAAAGCCTGGTCTCAGCTCTGGGCAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTTCCAAGCAGGTATTAAAAGCCTGGTCTCAGCTCTGGGCAGGGC  150

seq1  TTGGGGGGTTTCAAGGAACTGCTTCCATGTTTCTGGATTTTGCCAGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGGTTTCAAGGAACTGCTTCCATGTTTCTGGATTTTGCCAGTTTT  200

seq1  CCACTGAGTCACAAACTGGCCCAAGATCTGTGCCCACGTGAGCACAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGTCACAAACTGGCCCAAGATCTGTGCCCACGTGAGCACAGGGC  250

seq1  AAAGTCTTAGTGTTAGCAAGGACAGCCCAAAATGTGCCCTCTTAAGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTAGTGTTAGCAAGGACAGCCCAAAATGTGCCCTCTTAAGTTCC  300

seq1  TGTCAGCTCCCTCTGCCAGGCAGGTGGTGGGTGGCTCTGACAGATGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCTCCCTCTGCCAGGCAGGTGGTGGGTGGCTCTGACAGATGCCTT  350

seq1  CCTATGTTTCTTCTTGGAAGTCACTGGCTAGACTCCATCAGAGGGTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTTTCTTCTTGGAAGTCACTGGCTAGACTCCATCAGAGGGTGCTA  400

seq1  TGGTAGTAAGCCTGCGATAAACACCATTGACAGGCTATTTCACTCACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTAAGCCTGCGATAAACACCATTGACAGGCTATTTCACTCACAGC  450

seq1  ACCTACTAATGGATCAATAAGCTACACCGTTCCTGACCTGTTCAGTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTAATGGATCAATAAGCTACACCGTTCCTGACCTGTTCAGTTGTA  500

seq1  CATTGTGCTGCAGGTTGGCATTGCCCGGGTAGTCAGCAGTAAACAATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGCTGCAGGTTGGCATTGCCCGGGTAGTCAGCAGTAAACAATTGG  550

seq1  AAGGAAAGCTGCCGCCAAGGGGCTTATGATCTGCCAGAGACAACAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGCTGCCGCCAAGGGGCTTATGATCTGCCAGAGACAACAAAACA  600

seq1  ACCCCAAAAACACCCCCAAAAACCCACAGAAGTAGCTGGGGTACCAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAAAACACCCCCAAAAACCCACAGAAGTAGCTGGGGTACCAGGAA  650

seq1  GCCCTCTGGTCACCCTAGCAGGTAACTTTCTCTCTCTCTTTTTTTTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGGTCACCCTAGCAGGTAACTTTCTCTCTCTCTTTTTTTTCCTG  700

seq1  TTACCTGACGTCAATCATTCTGCAAGAGAAAGCAGTTGTTTTAGTTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGACGTCAATCATTCTGCAAGAGAAAGCAGTTGTTTTAGTTCATT  750

seq1  CTGTGCTGTTGTTCCTGTGGTGTGGTAATTTCAAGTACCGACCCCTCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGTTGTTCCTGTGGTGTGGTAATTTCAAGTACCGACCCCTCCCC  800

seq1  CTTCACGGTCTAGTCATTCTGTGATACTGTTGTGGCGATGGATACATTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACGGTCTAGTCATTCTGTGATACTGTTGTGGCGATGGATACATTGT  850

seq1  TTCCATTCCCCCCCCCCCCCCCCCATTGCTCCCGGGTTGTAGCCAATGCC  900
      || |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TT-CATTCCCCCCCCCCCCCCCCCATTGCTCCCGGGTGGTAGCCAATGCC  899

seq1  TACAAGAGAATCAGAAACCTGGAAACTCCTCCAGGGCATTCACCTCCACT  950
      ||| ||||| |||| |||||||||||||||||| ||||||||||||||||
seq2  TAC-AGAGATTCAG-AACCTGGAAACTCCTCCA-GGCATTCACCTCCACT  946

seq1  TGGGTATGAACTTGCTGGCATTTGTGCAGCTTGCTTCTCTGGAAGGAATG  1000
      ||||||||||| |||||||| |||||| || ||||  ||||| | |||||
seq2  TGGGTATGAAC-TGCTGGCA-TTGTGC-GC-TGCT--TCTGGGA-GAATG  989

seq1  ACTTTTAAGAAGGGACAGATGTCTCAGTGTGGGGCACTTCTATCTTTTAC  1050
      ||||||| || |||||||||||||||  ||||||||||||||||  ||||
seq2  ACTTTTAGGATGGGACAGATGTCTCA--GTGGGGCACTTCTATC--TTAC  1035

seq1  ATATGAGTTT  1060
      |  |||||||
seq2  AATTGAGTTT  1045