BAC Information

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BAC

Clone NameB6Ng01-060N17
Chromosome19 (Build37)
Map Location 27,219,621 - 27,381,672
singlet/doubletdoublet
Overlap geneVldlr, LOC100042588
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576
Downstream geneKcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060N17.bB6Ng01-060N17.g
ACCDH881712DH881713
length549683
definitionDH881712|Mus musculus domesticus DNA, BAC clone: B6Ng01-060N17, 5' end.DH881713|Mus musculus domesticus DNA, BAC clone: B6Ng01-060N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,219,621 - 27,220,175)(27,380,999 - 27,381,672)
sequence
atgaagatacagtcgcaccaggattcttgttcttgctgcatggacagcat
ttgctggctttttgtatttaatttcagaaaatgctcttggttgaggcttt
ggtaatgttatttttgttgttgtttggttggttggtttggtttggttttt
gtttttatttgctcgatttttttgtttttgttgttttgttttgtgtgttt
gagagagagagtttcatgtcgcccaggctggcctagaactcgtaatgtag
tagaagatgattttaaacttctgatcttcctgcttccctctcctgagtgc
ggatgctaaacagggatgcaccactgtgtgcagtttagacagtgctatac
agatcgaaccagagcttcttgcaagctgggcaagtattcgaccaactgaa
ctacatctccagccttgacagagtatatggtatatgtcatgaaaatgaat
catgactacataattgcataactgagtattttctaagtgctggcctttcc
ttaacttctctgccaatactattctttccaaaagaaaactaactctatc
gaattcttgcttcatttcctgagagaaggccatggttcttatatgaggtg
taaggagagcatggtgtgaaccagtagaataagcagtcagagtcacacag
catctgtagaacctggcagtggtggtcaggggcagagagggcttgattat
ctctacctttctgcctagagtacttaagtggataatcctgtctctggagc
atggaacacatggacagcaacaggattgtgtagtcatcagtgccgagccc
aggagaaatggtcatagagtgtgacgaaagcaaaggactcttgaaattgc
ctcataaccagaagcttattttgtgccatgtcattcgtgctcctcatttt
ctctgtgtcttgtgtctgtctgtctgtctgtcttggtcatattttctttg
atcttgtctggtctgctcgcttttgcttttatcttctttctctcactcct
acttcactgtttactttctccacccagccttagctctgcatttaacccac
cagcatgtgaagggaaattcctgtaccctttagaagttgtgtatttgtgg
gattaacctttatgttccctgctctggatttaaaagcagtataactttat
atatataaatatatatatattgtatgtgtatatatatatatatatatata
tatatatatatgtacacaatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27219621_27220175
seq2: B6Ng01-060N17.b_46_600

seq1  GAATTCATGAAGATACAGTCGCACCAGGATTCTTGTTCTTGCTGCATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAGATACAGTCGCACCAGGATTCTTGTTCTTGCTGCATGGA  50

seq1  CAGCATTTGCTGGCTTTTTGTATTTAATTTCAGAAAATGCTCTTGGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTGCTGGCTTTTTGTATTTAATTTCAGAAAATGCTCTTGGTTGA  100

seq1  GGCTTTGGTAATGTTATTTTTGTTGTTGTTTGGTTGGTTGGTTTGGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGGTAATGTTATTTTTGTTGTTGTTTGGTTGGTTGGTTTGGTTTG  150

seq1  GTTTTTGTTTTTATTTGCTCGATTTTTTTGTTTTTGTTGTTTTGTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTATTTGCTCGATTTTTTTGTTTTTGTTGTTTTGTTTTGT  200

seq1  GTGTTTGAGAGAGAGAGTTTCATGTCGCCCAGGCTGGCCTAGAACTCGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGAGAGAGAGAGTTTCATGTCGCCCAGGCTGGCCTAGAACTCGTA  250

seq1  ATGTAGTAGAAGATGATTTTAAACTTCTGATCTTCCTGCTTCCCTCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTAGAAGATGATTTTAAACTTCTGATCTTCCTGCTTCCCTCTCCT  300

seq1  GAGTGCGGATGCTAAACAGGGATGCACCACTGTGTGCAGTTTAGACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCGGATGCTAAACAGGGATGCACCACTGTGTGCAGTTTAGACAGTG  350

seq1  CTATACAGATCGAACCAGAGCTTCTTGCAAGCTGGGCAAGTATTCGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGATCGAACCAGAGCTTCTTGCAAGCTGGGCAAGTATTCGACCA  400

seq1  ACTGAACTACATCTCCAGCCTTGACAGAGTATATGGTATATGTCATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTACATCTCCAGCCTTGACAGAGTATATGGTATATGTCATGAAA  450

seq1  ATGAATCATGACAACATAATTGCATAACTGAGTATTTTCTAAGTGCTGGC  500
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGAATCATGACTACATAATTGCATAACTGAGTATTTTCTAAGTGCTGGC  500

seq1  CTTTCCTTAACTTCGCAGCCAAGACTATTCTTTCCAAAAGAAAACTAACT  550
      |||||||||||||| | ||||| |||||||||||||||||||||||||||
seq2  CTTTCCTTAACTTCTCTGCCAATACTATTCTTTCCAAAAGAAAACTAACT  550

seq1  CTATC  555
      |||||
seq2  CTATC  555

seq1: chr19_27380999_27381672
seq2: B6Ng01-060N17.g_70_752 (reverse)

seq1  --TATATATATATAT-------ATACATATATATATATATATATATATAT  41
        |||||||||||||       ||| ||||||||||||||||||||||||
seq2  TATATATATATATATTGTGTACATATATATATATATATATATATATATAT  50

seq1  ATATACACATACAATATATATATATTTATATATATAAAGTTATACTGCTT  91
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACATACAATATATATATATTTATATATATAAAGTTATACTGCTT  100

seq1  TTAAATCCAGAGCAGGGAACATAAAGGTTAATCCCACAAATACACAACTT  141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCCAGAGCAGGGAACATAAAGGTTAATCCCACAAATACACAACTT  150

seq1  CTAAAGGGTACAGGAATTTCCCTTCACATGCTGGTGGGTTAAATGCAGAG  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGTACAGGAATTTCCCTTCACATGCTGGTGGGTTAAATGCAGAG  200

seq1  CTAAGGCTGGGTGGAGAAAGTAAACAGTGAAGTAGGAGTGAGAGAAAGAA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCTGGGTGGAGAAAGTAAACAGTGAAGTAGGAGTGAGAGAAAGAA  250

seq1  GATAAAAGCAAAAGCGAGCAGACCAGACAAGATCAAAGAAAATATGACCA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGCAAAAGCGAGCAGACCAGACAAGATCAAAGAAAATATGACCA  300

seq1  AGACAGACAGACAGACAGACACAAGACACAGAGAAAATGAGGAGCACGAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACAGACAGACAGACACAAGACACAGAGAAAATGAGGAGCACGAA  350

seq1  TGACATGGCACAAAATAAGCTTCTGGTTATGAGGCAATTTCAAGAGTCCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGGCACAAAATAAGCTTCTGGTTATGAGGCAATTTCAAGAGTCCT  400

seq1  TTGCTTTCGTCACACTCTATGACCATTTCTCCTGGGCTCGGCACTGATGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCGTCACACTCTATGACCATTTCTCCTGGGCTCGGCACTGATGA  450

seq1  CTACACAATCCTGTTGCTGTCCATGTGTTCCATGCTCCAGAGACAGGATT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAATCCTGTTGCTGTCCATGTGTTCCATGCTCCAGAGACAGGATT  500

seq1  ATCCACTTAAGTACTCTAGGCAGAAAGGTAGAGATAATCAAGCCCTCTCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTAAGTACTCTAGGCAGAAAGGTAGAGATAATCAAGCCCTCTCT  550

seq1  GCCCCTGACCACCACTGCCAGGTTCTACAGATGCTGTGTGACTCTGACTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGACCACCACTGCCAGGTTCTACAGATGCTGTGTGACTCTGACTG  600

seq1  CTTATTCTACTGGTTCACACCATGCTCTCCTTACACCTCATATAAGAACC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTACTGGTTCACACCATGCTCTCCTTACACCTCATATAAGAACC  650

seq1  ATGGCCTTCTCTCAGGAAATGAAGCAAGAATTC  674
      |||||||||||||||||||||||||||||||||
seq2  ATGGCCTTCTCTCAGGAAATGAAGCAAGAATTC  683