BAC Information

Click to search

BAC

Clone NameB6Ng01-061A08
Chromosome19 (Build37)
Map Location 18,885,895 - 18,887,029
singlet/doubletsinglet
Overlap geneTrpm6
Upstream genePcsk5, Eef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik
Downstream geneRorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061A08.bB6Ng01-061A08.g
ACCDH881825DH881826
length7181,117
definitionDH881825|Mus musculus domesticus DNA, BAC clone: B6Ng01-061A08, 5' end.DH881826|Mus musculus domesticus DNA, BAC clone: B6Ng01-061A08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactctcgcacctgcgtacaaggcttgtttactagttaggcacag
cggaggcccgcgccatcttataatggcgattgctcgctgcacacacggct
ctcctcagagattactggcggcacacatgcgattgctcgcagcacgtacc
ggctctccacataatctcaggatcttggtcatggaagcagtgtcaggtat
gggttctatctagtggagtaggcctttaatcaaataagatattggttggt
tactcccacaaaatttgttccaccattacagtagcatatcgtgaagaaag
aacaccattttagatcaaaaattttgtgactaggttggtgtttacatttt
gggggggggggtagggcataggacataagatgctggcacatggaggtgaa
ggctctatgtagacatcaccttgacttctccatgttcaatgagttgtgtg
agtatcttcagaaatgggtctttgccaccagttcacagagaacaatctgg
gttatttggggattcccattggacctctttggccaacaactcaactagat
gtaacctaatcccagtacaggaagcttcatttggtgacaagacatggcca
gatgggtgtctgtctcccacattacttggcgtttcatttagatgtatgtg
aatatgtatatattatatgttttaggaagcttctattatgttaggtttcc
agagtatgtctcaaagtg

gaattcagatgcgtaatatggaacaaaagagtatgctttctcagatgtcg
ggaaatagtgtttatcagaaggagactgggagatgctattgtgtgagtaa
tctccagagacattaattattaaccctggacaagagacagatgtgttgag
tatttgagaagacatacatttatctttcactgtagtctggaaagaaaatg
atatcactacaataaccttttttgtttatctctcttttgttttctttaat
aaacaaaatgacaatatataccagagtgtgagcagctttgctcagggcct
ctcccagcactctcttcatcagagacattcactgagaaatagaaaggagt
cttctgaaagcacactgcactcccagttcttcaggacggcccagccctac
aaatccaaggtacactcctttgttggtagagttgaaaacaaagttggttt
tgcagactgagatcacttctttattgacactggagacaggggagtaccaa
tgaagaatcattccccagcatcataaataaacacatgatgttattcacaa
agatcactgctgatcctgctggtcttcagcagtacagggccctgacaacc
cagcgaaagtctgtgcttgcctctcaggttctcttcctggttttcacctc
tgccctgtgcagttggtgtctgaggcaggatgtgtatgccatggtgttac
gtactcattagcctgccatgacactcttaacctccccactcaagctccac
accctttgtagctctctgttcttgggaggtggtccttttgtatcttcctt
tcctcaacaaagtttttctggaagttagttttatcgtaattttcagtata
acaaagatgttgtttgtgggtctttagcctactcttttctggggcagagt
gcttttgcttaagtatttccatggagatcatgagttgttggctggaagac
gcttcctttccactgctgtggcatggcccttagttaccattatgagcaga
ttatttttttatctttgaagataggagagcactctaatagtttgatagat
ggcctcaaattcaaggattgtttaaaaccttctgttatttgaggcttatg
ctggcgttgttgcttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_18885895_18887029
seq2: B6Ng01-061A08.g_71_1187

seq1  GAATTCAGATGCGTAATATGGAACAAAAGAGTATGCTTTCTCAGATGTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGCGTAATATGGAACAAAAGAGTATGCTTTCTCAGATGTCG  50

seq1  GGAAATAGTGTTTATCAGAAGGAGACTGGGAGATGCTATTGTGTGAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGTGTTTATCAGAAGGAGACTGGGAGATGCTATTGTGTGAGTAA  100

seq1  TCTCCAGAGACATTAATTATTAACCCTGGACAAGAGACAGATGTGTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAGACATTAATTATTAACCCTGGACAAGAGACAGATGTGTTGAG  150

seq1  TATTTGAGAAGACATACATTTATCTTTCACTGTAGTCTGGAAAGAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGAAGACATACATTTATCTTTCACTGTAGTCTGGAAAGAAAATG  200

seq1  ATATCACTACAATAACCTTTTTTGTTTATCTCTCTTTTGTTTTCTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTACAATAACCTTTTTTGTTTATCTCTCTTTTGTTTTCTTTAAT  250

seq1  AAACAAAATGACAATATATACCAGAGTGTGAGCAGCTTTGCTCAGGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATGACAATATATACCAGAGTGTGAGCAGCTTTGCTCAGGGCCT  300

seq1  CTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGT  350

seq1  CTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTAC  400

seq1  AAATCCAAGGTACACTCCTTTGTTGGTAGAGTTGAAAACAAAGTTGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAAGGTACACTCCTTTGTTGGTAGAGTTGAAAACAAAGTTGGTTT  450

seq1  TGCAGACTGAGATCACTTCTTTATTGACACTGGAGACAGGGGAGTACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTGAGATCACTTCTTTATTGACACTGGAGACAGGGGAGTACCAA  500

seq1  TGAAGAATCATTCCCCAGCATCATAAATAAACACATGATGTTATTCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATCATTCCCCAGCATCATAAATAAACACATGATGTTATTCACAA  550

seq1  AGATCACTGCTGATCCTGCTGGTCTTCAGCAGTACAGGGCCCTGACAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTGCTGATCCTGCTGGTCTTCAGCAGTACAGGGCCCTGACAACC  600

seq1  CAGCGAAAGTCTGTGCTTGCCTCTCAGGTTCTCTTCCTGGTTTTCACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGAAAGTCTGTGCTTGCCTCTCAGGTTCTCTTCCTGGTTTTCACCTC  650

seq1  TGCCCTGTGCAGTTGGTGTCTGAGGCAGGATGTGTATGCCATGGTGTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGTGCAGTTGGTGTCTGAGGCAGGATGTGTATGCCATGGTGTTAC  700

seq1  GTACTCATTAGCCTGCCATGACACTCTTAACCTCCCCACTCAAGCTCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCATTAGCCTGCCATGACACTCTTAACCTCCCCACTCAAGCTCCAC  750

seq1  ACCCTTTGTAGCTCTCTGTTCTTGGGAGGTGGTCCTTTTGTATCTTCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTGTAGCTCTCTGTTCTTGGGAGGTGGTCCTTTTGTATCTTCCTT  800

seq1  TCCTCAACAAAGTTTTTCTGGAAGTTAGTTTTATCGTAATTTTCAGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAACAAAGTTTTTCTGGAAGTTAGTTTTATCGTAATTTTCAGTATA  850

seq1  ACAAAGATGTTGTTTGTGGGTCTTTAGCCTACTCTTTTCTGGGGCAGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATGTTGTTTGTGGGTCTTTAGCCTACTCTTTTCTGGGGCAGAGT  900

seq1  GCTTTTGCTTAAGTATTTCCATGGAGATCATGAGTTGTTGGCTGGAAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGCTTAAGTATTTCCATGGAGATCATGAGTTGTTGGCTGGAAGAC  950

seq1  GCTTCCTTTCCACTGCTGTTGGCATGGCCCTTAGTTACCATTAATGAGCA  1000
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  GCTTCCTTTCCACTGCTG-TGGCATGGCCCTTAGTTACCATT-ATGAGCA  998

seq1  GATTATTTTTTTAATCTATTGAAAGATAGGAGAAGCACTCTAATAGTTTT  1050
      |||||||||||| |||| ||| |||||||||| |||||||||||||  ||
seq2  GATTATTTTTTT-ATCT-TTG-AAGATAGGAG-AGCACTCTAATAG--TT  1042

seq1  TGATAGGATGCCTCAAATTTTCAACGAATTGTTTAAAAACCTCTGTTATT  1100
      ||||||   ||||||||  ||||| | ||||||||||| | |||||||||
seq2  TGATAGATGGCCTCAAA--TTCAA-GGATTGTTTAAAACCTTCTGTTATT  1089

seq1  TTTGAAGCCTTATGCTGAGCGTTTGGTTTGCTTGA  1135
      |    || ||||||||| |||||    ||||||||
seq2  T---GAGGCTTATGCTG-GCGTT---GTTGCTTGA  1117


| Home | SequenceCutter | Blast | Download |