BAC Information

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BAC

Clone NameB6Ng01-061L20
Chromosome19 (Build37)
Map Location 38,174,652 - 38,356,867
singlet/doubletdoublet
Overlap geneGpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1
Upstream geneCpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55
Downstream geneTmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061L20.bB6Ng01-061L20.g
ACCDH882334DH882335
length8761,180
definitionDH882334|Mus musculus domesticus DNA, BAC clone: B6Ng01-061L20, 5' end.DH882335|Mus musculus domesticus DNA, BAC clone: B6Ng01-061L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,356,126 - 38,356,867)(38,174,652 - 38,175,831)
sequence
gaattcagcatcccatagtcccaagttgccggaagaaatagcttccatcc
cttacgttaagtcaaaagtaagacaggctggaaagtggataccagtgagc
atcccttgcctatgcctgtcacagagatgaaagataggatttctaaaatt
tttgttggccttttcagtacttacttttagaacttgtgctagtaaccatt
ccattgtaaattttaaacaaatatttgttgaacaaagagacatttgcttt
acattgcattctagtcactgctaggttaggatattgaatataatcttaaa
gcaaggacctgcctttatttgcttttgcatccccaactctatcccaattc
ctgtttttttttttttcatgtttgctgaactacatttcaaagactaaaat
ctctggctaaaactataactacaaagcaacattttctaaggaaagaagtc
aaaattcggcagagtgcattctgcatgactaacagaaaaaacaaacaaac
aaacaaacaaacaacaacaaaaaacccagctgggggctggcgagatggct
tagtgggtaagagcactgactgctcttccaaaggtcctgagttcaaatcc
cagcaaccacatggtggctcacaaccacccataatgagatctgacggcct
cttctggtgtgtctaaagacagctacagtgtacttatttataacaataaa
taaatcttaaaaaaaaaaaacccagttgaacaaatctatgcaggcagata
tcgacacagtggcttttctgggagggtagtagttctaactgaaagtgaac
acaaagattgtctctggggggaataacggttggttccttaacctgggtgc
tgggacacaaggatgcttatttgtaa
gaattctagaacatgtcctccctccctacccccataagaataagaggacc
agtgtattccatgttttctgtattcacgccaaaggatcttaacatggaga
aactccgaagttccttaaaggctatggactgactctgtgggaaacattgc
attttataagctgaccggttgaagaaataaattagaagaacaggagatga
cagggcaaggagaaagagtgatagggtgtaactggtttagaaagaaaatg
gctgagaaggaactggtctagactgtggtgagtttcacagtggaaaaaca
gcagagctgggtgtggcaactcacctctgccatctcagcactcaagaggc
tgaggcaggaggattgccataagtttgagattgcctgggctacagagtga
tgccctatctctaaataaatatatgaataagtaagcaaatacagacaaat
agcaaatgtctattttttccagcgctcagactggtagcttcctgcctgtg
gctcttgtttgtcatctccagtgggatgctacgaacggaggctttggatg
aagaattatttccttcccattaactgagagtacagagggctctccacacc
tccccccggccccttggaaccttctactgtcatgagacccttcaaaacct
ccatccgtataggctattagatatcctgcaatccagaggagctgatagcc
atgctagtaattctaacctacttagtgtttgagagtgagctttggacctc
acattctggagcagctcctgctccatcgagggcaagccttcctaccttgc
ttgtctacagtgttcttcttgtttagtatgggtctcatgtgtcaactatg
tgaaattaccatggtgacctgtgtttgatacgtggatcaaaacctggtac
acatagagctaagtgctcagaatctattattagtttccttatcttggggc
atcaacatttaaacattctttaaaacagcatcattcttctgattgctgta
acaccagtggctgccatttcaagagggtggacactttcccagcaacagta
actctcagctcaggtcagctctggtccttcagcgggattctgccttgtgt
gtgctgtgtcctgggccaggcagtgaaccacacctctaggggtggggaga
acatgccactttgctagaatgagtgctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38356126_38356867
seq2: B6Ng01-061L20.b_47_788 (reverse)

seq1  TGCATAGATTTGTTCAACTGGGTTTTTTTTTTTTAAGATTTATTTATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGATTTGTTCAACTGGGTTTTTTTTTTTTAAGATTTATTTATTGT  50

seq1  TATAAATAAGTACACTGTAGCTGTCTTTAGACACACCAGAAGAGGCCGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAAGTACACTGTAGCTGTCTTTAGACACACCAGAAGAGGCCGTC  100

seq1  AGATCTCATTATGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCATTATGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGA  150

seq1  ACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTACCCACTAAGCCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTACCCACTAAGCCATCT  200

seq1  CGCCAGCCCCCAGCTGGGTTTTTTGTTGTTGTTTGTTTGTTTGTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGCCCCCAGCTGGGTTTTTTGTTGTTGTTTGTTTGTTTGTTTGTTT  250

seq1  GTTTTTTCTGTTAGTCATGCAGAATGCACTCTGCCGAATTTTGACTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTCTGTTAGTCATGCAGAATGCACTCTGCCGAATTTTGACTTCTT  300

seq1  TCCTTAGAAAATGTTGCTTTGTAGTTATAGTTTTAGCCAGAGATTTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGAAAATGTTGCTTTGTAGTTATAGTTTTAGCCAGAGATTTTAGT  350

seq1  CTTTGAAATGTAGTTCAGCAAACATGAAAAAAAAAAAAACAGGAATTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAATGTAGTTCAGCAAACATGAAAAAAAAAAAAACAGGAATTGGG  400

seq1  ATAGAGTTGGGGATGCAAAAGCAAATAAAGGCAGGTCCTTGCTTTAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTTGGGGATGCAAAAGCAAATAAAGGCAGGTCCTTGCTTTAAGAT  450

seq1  TATATTCAATATCCTAACCTAGCAGTGACTAGAATGCAATGTAAAGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCAATATCCTAACCTAGCAGTGACTAGAATGCAATGTAAAGCAAA  500

seq1  TGTCTCTTTGTTCAACAAATATTTGTTTAAAATTTACAATGGAATGGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTTGTTCAACAAATATTTGTTTAAAATTTACAATGGAATGGTTA  550

seq1  CTAGCACAAGTTCTAAAAGTAAGTACTGAAAAGGCCAACAAAAATTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACAAGTTCTAAAAGTAAGTACTGAAAAGGCCAACAAAAATTTTAG  600

seq1  AAATCCTATCTTTCATCTCTGTGACAGGCATAGGCAAGGGATGCTCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTATCTTTCATCTCTGTGACAGGCATAGGCAAGGGATGCTCACTG  650

seq1  GTATCCACTTTCCAGCCTGTCTTACTTTTGACTTAACGTAAGGGATGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCACTTTCCAGCCTGTCTTACTTTTGACTTAACGTAAGGGATGGAA  700

seq1  GCTATTTCTTCCGGCAACTTGGGACTATGGGATGCTGAATTC  742
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCTTCCGGCAACTTGGGACTATGGGATGCTGAATTC  742

seq1: chr19_38174652_38175831
seq2: B6Ng01-061L20.g_70_1249

seq1  GAATTCTAGAACATGTCCTCCCTCCCTACCCCCATAAGAATAAGAGGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAACATGTCCTCCCTCCCTACCCCCATAAGAATAAGAGGACC  50

seq1  AGTGTATTCCATGTTTTCTGTATTCACGCCAAAGGATCTTAACATGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATTCCATGTTTTCTGTATTCACGCCAAAGGATCTTAACATGGAGA  100

seq1  AACTCCGAAGTTCCTTAAAGGCTATGGACTGACTCTGTGGGAAACATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCGAAGTTCCTTAAAGGCTATGGACTGACTCTGTGGGAAACATTGC  150

seq1  ATTTTATAAGCTGACCGGTTGAAGAAATAAATTAGAAGAACAGGAGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAAGCTGACCGGTTGAAGAAATAAATTAGAAGAACAGGAGATGA  200

seq1  CAGGGCAAGGAGAAAGAGTGATAGGGTGTAACTGGTTTAGAAAGAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAAGGAGAAAGAGTGATAGGGTGTAACTGGTTTAGAAAGAAAATG  250

seq1  GCTGAGAAGGAACTGGTCTAGACTGTGGTGAGTTTCACAGTGGAAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAGGAACTGGTCTAGACTGTGGTGAGTTTCACAGTGGAAAAACA  300

seq1  GCAGAGCTGGGTGTGGCAACTCACCTCTGCCATCTCAGCACTCAAGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTGGGTGTGGCAACTCACCTCTGCCATCTCAGCACTCAAGAGGC  350

seq1  TGAGGCAGGAGGATTGCCATAAGTTTGAGATTGCCTGGGCTACAGAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGGAGGATTGCCATAAGTTTGAGATTGCCTGGGCTACAGAGTGA  400

seq1  TGCCCTATCTCTAAATAAATATATGAATAAGTAAGCAAATACAGACAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTATCTCTAAATAAATATATGAATAAGTAAGCAAATACAGACAAAT  450

seq1  AGCAAATGTCTATTTTTTCCAGCGCTCAGACTGGTAGCTTCCTGCCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGTCTATTTTTTCCAGCGCTCAGACTGGTAGCTTCCTGCCTGTG  500

seq1  GCTCTTGTTTGTCATCTCCAGTGGGATGCTACGAACGGAGGCTTTGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGTTTGTCATCTCCAGTGGGATGCTACGAACGGAGGCTTTGGATG  550

seq1  AAGAATTATTTCCTTCCCATTAACTGAGAGTACAGAGGGCTCTCCACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTATTTCCTTCCCATTAACTGAGAGTACAGAGGGCTCTCCACACC  600

seq1  TCCCCCCGGCCCCTTGGAACCTTCTACTGTCATGAGACCCTTCAAAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCGGCCCCTTGGAACCTTCTACTGTCATGAGACCCTTCAAAACCT  650

seq1  CCATCCGTATAGGCTATTAGATATCCTGCAATCCAGAGGAGCTGATAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCGTATAGGCTATTAGATATCCTGCAATCCAGAGGAGCTGATAGCC  700

seq1  ATGCTAGTAATTCTAACCTACTTAGTGTTTGAGAGTGAGCTTTGGACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGTAATTCTAACCTACTTAGTGTTTGAGAGTGAGCTTTGGACCTC  750

seq1  ACATTCTGGAGCAGCTCCTGCTCCATCGAGGGCAAGCCTTCCTACCTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGGAGCAGCTCCTGCTCCATCGAGGGCAAGCCTTCCTACCTTGC  800

seq1  TTGTCTACAGTGTTCTTCTTGTTTAAGTATGGGTCTCATGTGTCAACTAT  850
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGTCTACAGTGTTCTTCTTGTTT-AGTATGGGTCTCATGTGTCAACTAT  849

seq1  GTGAAATTACCATGGTGACCTGTGTTTGATACGTGGATCAAAACCTGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTACCATGGTGACCTGTGTTTGATACGTGGATCAAAACCTGGTA  899

seq1  CACATAGAGCTAAGTGCTCAGGAATCTATTATTAGTTTCCTTATCTTGGG  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CACATAGAGCTAAGTGCTCA-GAATCTATTATTAGTTTCCTTATCTTGGG  948

seq1  GCATCAACATTTAAACATCCTTTAAAACAGCACCATTCTTCTGATTGCTG  1000
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  GCATCAACATTTAAACATTCTTTAAAACAGCATCATTCTTCTGATTGCTG  998

seq1  TAACACAAGTGGCTGCCATTTCAAGAGGGTGGACAC-TTCCCAGCAACAG  1049
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  TAACACCAGTGGCTGCCATTTCAAGAGGGTGGACACTTTCCCAGCAACAG  1048

seq1  TAACTTCTCAGCCCAGGTCAGCTCT-GTCCTTTCCAGCGGGATGCCTGCC  1098
      |||| ||||||| |||||||||||| ||||||  |||||||||  |||||
seq2  TAAC-TCTCAGCTCAGGTCAGCTCTGGTCCTT--CAGCGGGAT-TCTGCC  1094

seq1  -TGTGTGTGCTGTGGCCCTGGCCAGGCAGTGACCCACA-CTC-ATGGGTG  1145
       ||||||||||||| ||  ||||||||||||| ||||| ||| | |||||
seq2  TTGTGTGTGCTGTGTCCTGGGCCAGGCAGTGAACCACACCTCTAGGGGTG  1144

seq1  GGGAAGACTGCCCACTTTGGCTAGAAT--GTGCTGTC  1180
      ||||  ||   ||||||| ||||||||  ||||||||
seq2  GGGAGAACATGCCACTTT-GCTAGAATGAGTGCTGTC  1180