BAC Information

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BAC

Clone NameB6Ng01-062B19
Chromosome19 (Build37)
Map Location 25,322,120 - 25,439,471
singlet/doubletdoublet
Overlap geneAnkrd15, LOC433233
Upstream geneFxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503
Downstream geneLOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062B19.bB6Ng01-062B19.g
ACCDH882608DH882609
length1,119682
definitionDH882608|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B19, 5' end.DH882609|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,438,343 - 25,439,471)(25,322,120 - 25,322,760)
sequence
gaattctatatgccaacctcagatccttctcaacttaggaaaggccattt
caggtacaatggcaaggcttggaatgtgagccaagcatcttacttgtatc
catttctcctaatagactaggcttggcagggcagccagggatgtccacga
ctataccattataccaaggttgtcttctcctccacgtaagcacagcctct
tcctccttttccaccatggctctgactatacccatcaaggactaaagtgc
tgtgcctacatgaatgacctacagagtgggaaaccgaaaaagaacaactc
ctgggaaatattaactcctattttaagagagaactgagcaaagttaacta
caggagacacgtcgctatataagacacaccaagatggcactgcccatgtg
tctccaaagtgactaagatcctatcagatgcttgctcttctgttatcagt
gtctgctgtaaggatacagaagagctttagcatcgaggcgctatagtgcc
cagcgtcctattttagacaggtttttgttgttgttttgttttgtgttgtt
ttggtttccgatttgagactataaaagcacagctaaccttgaactcactg
tttggccagacaggccctgaatttgtgatccttcttgtgtcagcctctca
agggctaggactgcaggtgtatgccaccatacccaccttaagggcttaat
ctttaaactcttaaatgtttcagaataagacccaaatcctttttacctgg
gttaataggaattgattcttctgacaaaaggattggagctttgtcacaaa
ccataataatgtcatggtgactgaaccagagtggccacactggctccaaa
accagtgcttggcgtaattactttcccaggaaatgatatcttcaggccta
caaggccagagtccctctgctccacttctctgtatagaggctgagggctc
tcaccacagacttctccatggggatactagggagatggtggaagagatac
gtgctacacagtgataagcacagcccacgccagcagccacctggtctcac
agcaagcaatcaaaggtaaaagattctctgtggactggatagatgctgaa
aagtaggagatactgatgc
gaattctggggatagcagtgaagaaaccctggtactttccagggctagtg
acagcgccttgttgtctgttctcatatgcattcaaacaaacttttctctc
atcagtacaaggtcagtgagtcaggacaggtcatgaagaagacatctgtg
cacatctcacagacttgtctaaattctgggaagacagttacaggggagtg
agaaaaacagaaaaactcagttttaaaactggacaagacggcatccgaag
tcattagaaaaatgcctgttaagactattgcaaacaaatggttgaaattt
aaaagtaataaaaagccctgatgagtagtggcagagatgtaggaatgtac
actttattgtatactgctgatgaaactctaagtggcccgtctccccctct
tccgaaagctgttcgggagtgccagtgaaggcggaaggaacacacactct
gacttggcaagtacactcacttccctgataccatgcatatcctcaacaag
gttaacatctacgttcatcataagcatttgggagacttcataaataaggc
tgactagaaactctccaaatgggtcaaaggtggctgtgatatcctataat
ggagtactaccactcagcattgggggtgggggagggggagaaactaagaa
gaatgaagcctgaagtgtgggacactatgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25438343_25439471
seq2: B6Ng01-062B19.b_44_1162 (reverse)

seq1  GCATCCAGTA-CTCCTAACTTCTCAGCCATCTATCCAGTCCACAGAGAAT  49
      |||| ||||| ||||| |||| |||| |||||||||||||||||||||||
seq2  GCAT-CAGTATCTCCT-ACTTTTCAG-CATCTATCCAGTCCACAGAGAAT  47

seq1  CTTTTTACCTTTGATTGGCTTTGCCTGTGAGACCAGGTGGCTGCTGGCGT  99
      | |||||||||||||| ||||   ||||||||||||||||||||||||||
seq2  C-TTTTACCTTTGATT-GCTT--GCTGTGAGACCAGGTGGCTGCTGGCGT  93

seq1  GGGCTGTGCTTATCACTGTGTAGCACGTATCTCCTTCCACCATCTCCCTA  149
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGCTGTGCTTATCACTGTGTAGCACGTATCT-CTTCCACCATCTCCCTA  142

seq1  GTTATTCCCCATGGAG-AGTCTGTGGTGAGAGCCCTCAGCCTCTATAACA  198
      ||   ||||||||||| ||||||||||||||||||||||||||||| |||
seq2  GT--ATCCCCATGGAGAAGTCTGTGGTGAGAGCCCTCAGCCTCTAT-ACA  189

seq1  GGGAAGTGGAGCAGAGGGGACTCTGGCCTTGTAGGCCTGAAGATATCATT  248
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGGAGCAGA-GGGACTCTGGCCTTGTAGGCCTGAAGATATCATT  238

seq1  TCCTGGGAAAGTAATTACGCCAAGCACTGGTTTTGGAGCCAGTGTGGCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGAAAGTAATTACGCCAAGCACTGGTTTTGGAGCCAGTGTGGCCA  288

seq1  CTCTGGTTCAGTCACCATGACATTATTATGGTTTGTGACAAAGCTCCAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTCAGTCACCATGACATTATTATGGTTTGTGACAAAGCTCCAAT  338

seq1  CCTTTTGTCAGAAGAATCAATTCCTATTAACCCAGGTAAAAAGGATTTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTCAGAAGAATCAATTCCTATTAACCCAGGTAAAAAGGATTTGG  388

seq1  GTCTTATTCTGAAACATTTAAGAGTTTAAAGATTAAGCCCTTAAGGTGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTCTGAAACATTTAAGAGTTTAAAGATTAAGCCCTTAAGGTGGG  438

seq1  TATGGTGGCATACACCTGCAGTCCTAGCCCTTGAGAGGCTGACACAAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGGCATACACCTGCAGTCCTAGCCCTTGAGAGGCTGACACAAGAA  488

seq1  GGATCACAAATTCAGGGCCTGTCTGGCCAAACAGTGAGTTCAAGGTTAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACAAATTCAGGGCCTGTCTGGCCAAACAGTGAGTTCAAGGTTAGC  538

seq1  TGTGCTTTTATAGTCTCAAATCGGAAACCAAAACAACACAAAACAAAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTTATAGTCTCAAATCGGAAACCAAAACAACACAAAACAAAACA  588

seq1  ACAACAAAAACCTGTCTAAAATAGGACGCTGGGCACTATAGCGCCTCGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAACCTGTCTAAAATAGGACGCTGGGCACTATAGCGCCTCGAT  638

seq1  GCTAAAGCTCTTCTGTATCCTTACAGCAGACACTGATAACAGAAGAGCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGCTCTTCTGTATCCTTACAGCAGACACTGATAACAGAAGAGCAA  688

seq1  GCATCTGATAGGATCTTAGTCACTTTGGAGACACATGGGCAGTGCCATCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGATAGGATCTTAGTCACTTTGGAGACACATGGGCAGTGCCATCT  738

seq1  TGGTGTGTCTTATATAGCGACGTGTCTCCTGTAGTTAACTTTGCTCAGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTCTTATATAGCGACGTGTCTCCTGTAGTTAACTTTGCTCAGTT  788

seq1  CTCTCTTAAAATAGGAGTTAATATTTCCCAGGAGTTGTTCTTTTTCGGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTAAAATAGGAGTTAATATTTCCCAGGAGTTGTTCTTTTTCGGTT  838

seq1  TCCCACTCTGTAGGTCATTCATGTAGGCACAGCACTTTAGTCCTTGATGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTCTGTAGGTCATTCATGTAGGCACAGCACTTTAGTCCTTGATGG  888

seq1  GTATAGTCAGAGCCATGGTGGAAAAGGAGGAAGAGGCTGTGCTTACGTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTCAGAGCCATGGTGGAAAAGGAGGAAGAGGCTGTGCTTACGTGG  938

seq1  AGGAGAAGACAACCTTGGTATAATGGTATAGTCGTGGACATCCCTGGCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGACAACCTTGGTATAATGGTATAGTCGTGGACATCCCTGGCTG  988

seq1  CCCTGCCAAGCCTAGTCTATTAGGAGAAATGGATACAAGTAAGATGCTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCAAGCCTAGTCTATTAGGAGAAATGGATACAAGTAAGATGCTTG  1038

seq1  GCTCACATTCCAAGCCTTGCCATTGTACCTGAAATGGCCTTTCCTAAGTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACATTCCAAGCCTTGCCATTGTACCTGAAATGGCCTTTCCTAAGTT  1088

seq1  GAGAAGGATCTGAGGTTGGCATATAGAATTC  1129
      |||||||||||||||||||||||||||||||
seq2  GAGAAGGATCTGAGGTTGGCATATAGAATTC  1119

seq1: chr19_25322120_25322760
seq2: B6Ng01-062B19.g_65_705

seq1  GAATTCTGGGGATAGCAGTGAAGAAACCCTGGTACTTTCCAGGGCTAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGATAGCAGTGAAGAAACCCTGGTACTTTCCAGGGCTAGTG  50

seq1  ACAGCGCCTTGTTGTCTGTTCTCATATGCATTCAAACAAACTTTTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGCCTTGTTGTCTGTTCTCATATGCATTCAAACAAACTTTTCTCTC  100

seq1  ATCAGTACAAGGTCAGTGAGTCAGGACAGGTCATGAAGAAGACATCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTACAAGGTCAGTGAGTCAGGACAGGTCATGAAGAAGACATCTGTG  150

seq1  CACATCTCACAGACTTGTCTAAATTCTGGGAAGACAGTTACAGGGGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCACAGACTTGTCTAAATTCTGGGAAGACAGTTACAGGGGAGTG  200

seq1  AGAAAAACAGAAAAACTCAGTTTTAAAACTGGACAAGACGGCATCCGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACAGAAAAACTCAGTTTTAAAACTGGACAAGACGGCATCCGAAG  250

seq1  TCATTAGAAAAATGCCTGTTAAGACTATTGCAAACAAATGGTTGAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGAAAAATGCCTGTTAAGACTATTGCAAACAAATGGTTGAAATTT  300

seq1  AAAAGTAATAAAAAGCCCTGATGAGTAGTGGCAGAGATGTAGGAATGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAATAAAAAGCCCTGATGAGTAGTGGCAGAGATGTAGGAATGTAC  350

seq1  ACTTTATTGTATACTGCTGATGAAACTCTAAGTGGCCCGTCTCCCCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTGTATACTGCTGATGAAACTCTAAGTGGCCCGTCTCCCCCTCT  400

seq1  TCCGAAAGCTGTTCGGGAGTGCCAGTGAAGGCGGAAGGAACACACACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAAAGCTGTTCGGGAGTGCCAGTGAAGGCGGAAGGAACACACACTCT  450

seq1  GACTTGGCAAGTACACTCACTTCCCTGATACCATGCATATCCTCAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGCAAGTACACTCACTTCCCTGATACCATGCATATCCTCAACAAG  500

seq1  GTTAACATCTACGTTCATCATAAGCATTTGGGAGACTTCATAAATAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATCTACGTTCATCATAAGCATTTGGGAGACTTCATAAATAAGGC  550

seq1  TGACTAGAAACTCTCCAAATGGGTCAAAGGTGGCTGTGATATCCTATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGAAACTCTCCAAATGGGTCAAAGGTGGCTGTGATATCCTATAAT  600

seq1  GGAGTACTACCACTCAGCATTGGGGGTGGGGGAGGGGGAGA  641
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACTACCACTCAGCATTGGGGGTGGGGGAGGGGGAGA  641