BAC Information

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BAC

Clone NameB6Ng01-063H09
Chromosome19 (Build37)
Map Location 58,969,582 - 59,053,648
singlet/doubletdoublet
Overlap gene6430537H07Rik, 4930506M07Rik
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a
Downstream geneLOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063H09.bB6Ng01-063H09.g
ACCDH883546DH883547
length639743
definitionDH883546|Mus musculus domesticus DNA, BAC clone: B6Ng01-063H09, 5' end.DH883547|Mus musculus domesticus DNA, BAC clone: B6Ng01-063H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,969,582 - 58,970,218)(59,052,909 - 59,053,648)
sequence
gaattccttactactgctagagaaaattacactgatcgatacaaagtgag
catcccttgctctaattcatgttcaattttgtaatataaatacatgcctt
atatactacccaaagcaaatataacaaaagaaactaactttccatgggat
tcttaccttagtttccttttgtgtttctgtgaaacaaaggcaccttaaag
aaggaatagttcattttggttcatagctgaagtccaaatggggacttcaa
gacacagctgcacacattgtattgtgctcggagtcaagaagagagcaacg
ggtgcttctgctgagcctgatttctcctttctatccagttcatgaaccgg
tccatggatcagtgccacccacaatggacaggtcttcttgttccaatgaa
cctaatcaagataatgcccaacaggcaccatcagaggcctctcttcccgg
tggttctcagtttgacagctgagatttaccacactactcatacaataaaa
tacatttgctgccctggccctcaaggacccagatcccatccccctgacag
accttccaatccacaagcttacccctgacttatatagactctgtctcgct
gctccctgcctgccatgcttgccattgaaaagggtgtct
gaattccagtttttaattggcttgctttcgggggtgggggagggagtgtc
ttgaaacaactgctgagcacatgatccagaatgactcatgaagaaggtct
gttatagcagatcatggataactaactacacgattctgcagtctgggccc
cccccagacttctgatgcaggttctgtgctggtaaatgacagatcatttc
actttggccgcctggggtttacatatgacagggagggtccgaccgactca
tgcagccttcctctctctctgtgactcagcagttctgctctacagggagg
gtccgaccgactcatgtagccttcctctctctctgtgactcagcagttct
gctctacagatcctgctgcatcgggagaagggctgccgtggctcttttac
aagtatcaactttaattgcttattagtagtaactgtccttagatgctgca
ttgaaggaggaggtggacggagccaccgtggaccaggcccctatggtagt
actgcttgagcctttgttgggttcaaacctctagacccacatggcttcct
tgaatagtagcctaggttctcagtactgcccctgaaggacatgggattgg
gaatgtattagttgcctttttctgttgctatgataaaaaatactttaaaa
aaggcatcttaaggtggagagggtttattttgtgctgatagtgtgacagt
gcattagtccactgtgacagggaaaacctgatagctaaaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58969582_58970218
seq2: B6Ng01-063H09.b_46_684

seq1  GAATTCCTTACTACTGCTAGAGAAAATTACACTGATCGATACAAAGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACTACTGCTAGAGAAAATTACACTGATCGATACAAAGTGAG  50

seq1  CATCCCTTGCTCTAATTCATGTTCAATTTTGTAATATAAATACATGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTGCTCTAATTCATGTTCAATTTTGTAATATAAATACATGCCTT  100

seq1  ATATACTACCCAAAGCAAATATAACAAAAGAAACTAACTTTCCATGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTACCCAAAGCAAATATAACAAAAGAAACTAACTTTCCATGGGAT  150

seq1  TCTTACCTTAGTTTCCTTTTGTGTTTCTGTGAAACAAAGGCACCTTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTTAGTTTCCTTTTGTGTTTCTGTGAAACAAAGGCACCTTAAAG  200

seq1  AAGGAATAGTTCATTTTGGTTCATAGCTGAAGTCCAAATGGGGACTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATAGTTCATTTTGGTTCATAGCTGAAGTCCAAATGGGGACTTCAA  250

seq1  GACACAGCTGCACACATTGTATTGTGCTCGGAGTCAAGAAGAGAGCAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCTGCACACATTGTATTGTGCTCGGAGTCAAGAAGAGAGCAACG  300

seq1  GGTGCTTCTGCTGAGCCTGATTTCTCCTTTCTATCCAGTTCATGAACCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCTGCTGAGCCTGATTTCTCCTTTCTATCCAGTTCATGAACCGG  350

seq1  TCCATGGATCAGTGCCACCCACAATGGACAGGTCTTCTTGTTCCAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGATCAGTGCCACCCACAATGGACAGGTCTTCTTGTTCCAATGAA  400

seq1  CCTAATCAAGATAATGCCCAACAGGCACCATCAGAGGCCTCTCTTCCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCAAGATAATGCCCAACAGGCACCATCAGAGGCCTCTCTTCCCGG  450

seq1  TGGTTCTCAGTTTGACAGCTGAGATTTACCACACTACTCATACAATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCAGTTTGACAGCTGAGATTTACCACACTACTCATACAATAAAA  500

seq1  TACATTTGCTGCCCTGGCCCTCAAGGACCCAGATCCCATCCCCCTGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGCTGCCCTGGCCCTCAAGGACCCAGATCCCATCCCCCTGACAG  550

seq1  ACCTTCCAATCCACAAGCTTACCCCTGACTTATATAGACTCTGTCTCGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCAATCCACAAGCTTACCCCTGACTTATATAGACTCTGTCTCGCT  600

seq1  GCTCCCTGCCTGCCATGCTTGCCA-TGCAAAGGG-GTCT  637
      |||||||||||||||||||||||| || |||||| ||||
seq2  GCTCCCTGCCTGCCATGCTTGCCATTGAAAAGGGTGTCT  639

seq1: chr19_59052909_59053648
seq2: B6Ng01-063H09.g_71_813 (reverse)

seq1  GACCTTTAGCTATCAGGTTTTCCCTGTCACAGTGGACTAATGCACTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTAGCTATCAGGTTTTCCCTGTCACAGTGGACTAATGCACTGTCA  50

seq1  CACTATCAGCAC-AAATTAACCCTCTCCACCTTAAGATGCCTTTGTTAAA  99
      |||||||||||| |||| |||||||||||||||||||||||||| |||||
seq2  CACTATCAGCACAAAATAAACCCTCTCCACCTTAAGATGCCTTTTTTAAA  100

seq1  GTA-TTTTTATCATAGCAACAG-AAAAGGCAACTAATACATTCCCAATCC  147
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTATTTTTTATCATAGCAACAGAAAAAGGCAACTAATACATTCCCAATCC  150

seq1  CATGTCCTTCAGGGGCAGTACTGAGAACCTAGGCTACTATTCAAGGAAGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTTCAGGGGCAGTACTGAGAACCTAGGCTACTATTCAAGGAAGC  200

seq1  CATGTGGGTCTAGAGGTTTGAACCCAACAAAGGCTCAAGCAGTACTACCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGGTCTAGAGGTTTGAACCCAACAAAGGCTCAAGCAGTACTACCA  250

seq1  TAGGGGCCTGGTCCACGGTGGCTCCGTCCACCTCCTCCTTCAATGCAGCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCCTGGTCCACGGTGGCTCCGTCCACCTCCTCCTTCAATGCAGCA  300

seq1  TCTAAGGACAGTTACTACTAATAAGCAATTAAAGTTGATACTTGTAAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGACAGTTACTACTAATAAGCAATTAAAGTTGATACTTGTAAAAG  350

seq1  AGCCACGGCAGCCCTTCTCCCGATGCAGCAGGATCTGTAGAGCAGAACTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACGGCAGCCCTTCTCCCGATGCAGCAGGATCTGTAGAGCAGAACTG  400

seq1  CTGAGTCACAGAGAGAGAGGAAGGCTACATGAGTCGGTCGGACCCTCCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCACAGAGAGAGAGGAAGGCTACATGAGTCGGTCGGACCCTCCCT  450

seq1  GTAGAGCAGAACTGCTGAGTCACAGAGAGAGAGGAAGGCTGCATGAGTCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCAGAACTGCTGAGTCACAGAGAGAGAGGAAGGCTGCATGAGTCG  500

seq1  GTCGGACCCTCCCTGTCATATGTAAACCCCAGGCGGCCAAAGTGAAATGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGACCCTCCCTGTCATATGTAAACCCCAGGCGGCCAAAGTGAAATGA  550

seq1  TCTGTCATTTACCAGCACAGAACCTGCATCAGAAGTCTGGGGGGGGCCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATTTACCAGCACAGAACCTGCATCAGAAGTCTGGGGGGGGCCCA  600

seq1  GACTGCAGAATCGTGTAGTTAGTTATCCATGATCTGCTATAACAGACCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGAATCGTGTAGTTAGTTATCCATGATCTGCTATAACAGACCTT  650

seq1  CTTCATGAGTCATTCTGGATCATGTGCTCAGCAGTTGTTTCAAGACACTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGAGTCATTCTGGATCATGTGCTCAGCAGTTGTTTCAAGACACTC  700

seq1  CCTCCCCCACCCCCGAAAGCAAGCCAATTAAAAACTGGAATTC  740
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCACCCCCGAAAGCAAGCCAATTAAAAACTGGAATTC  743