BAC Information

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BAC

Clone NameB6Ng01-064B14
Chromosome19 (Build37)
Map Location 18,935,306 - 19,095,584
singlet/doubletdoublet
Overlap geneTrpm6, Rorb
Upstream genePcsk5, Eef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik
Downstream geneLOC100042218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064B14.bB6Ng01-064B14.g
ACCDH883989DH883990
length1,217984
definitionDH883989|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B14, 5' end.DH883990|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,094,316 - 19,095,584)(18,935,306 - 18,936,041)
sequence
gaattctttgttcagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatatattggatattagtcc
cctatctgatttgggataggtaaagatcctttcccaatctgttggtggcc
tttttgtcttattgaaagtgttttttgctttgcagaagctttgcaatttt
ccattttcatatttttaaataaaaaaacttaggcaaaagattctgatcat
gcttcccttatccccaactccacccagattccccatctctccttcaacgc
aattctactcccttctctctatttaaaaagtacacacacaaaaaaaaaca
agaaatacatataaaaaaccatgaaaaccaaaatatgtaaacaaaaaaca
agtaagataaaagaaaaaaaaaaaaaaccacccaaatgaaacatgagaca
aacatatcattgagttcattttgggttacccatttactcctagacattgt
gcctaccatgaggtttgattaatataccaggaatactcctttgaaaaatt
aatttttcttttgccagtcgacatcaattgcagatagtttcttgtccact
cccctgtcttaatattggcacccctatggcttaaacctgtgcatgctatt
cattgtacattagtcctatcgttcctgaaagacactgtttctttggagtc
atccaccatctctaacccttactaactaatgagagtcaaagcaacctttt
cctctggtgtctttcgatatggccatttgtccattcattgctcaactctc
tggtggtatagttacaaaaatgcacaccaaatattcattttaatttgatt
aatatttattgattgtgtgacaggtgctataataatgatcaaaggaggga
aagtggaagcaactacaaatacccataacagcagccaatttcataataaa
tgtatcccttctcatgcagaccacgccaatgatgctctcctctatgatgt
gtagccattttctacccattacacaatctggtacttctactggagacctc
ctctacagagatgaatagacctcactgaaagaaagataaccaacacacgt
tcctcgaaatagactgatccggttaaagatattatggaacactaataagg
cgagattcggaacattgccttgaatccattcagatacacgcacgtgtcac
cctcaaatacctgggac
gaattctctgtagagctgatttgatggacatgtaatatttttttttagta
tgtttgtaccttggaaagtgtttccttctcaaatgatggcagatagtttt
gctggtgcaatgttctcttttggcttctatgatcttttacaacttgaagt
atgttactccacacttttcatcaaaggtttttctatgaagtagactgaaa
ccattctagaaaaccacaactggtcaaaatgctaagaacacctgaccatg
gggtgctcagccacagctaatatatcaccaccaacacaacctgatactta
aggtgcagggagtttcttgaagaaggaagtagagaagtcgtaagagccag
aggactaagatgtctgctttaaagtagtgtcttctatattttccagggaa
actgcattcatgaaatcttgaaaatattgttgcctaaataaggtcttcac
aataacattagttgataggccagtatggatgcaggatatctcacaagggc
ctacccctagatggaaatctacaggcaattgatgactgcagagagaggca
gaatcggtcttctccagagacaagcccccaattaagtaatttatcttgtc
aacccttgacagatacatatataagaaagactaaatgggctcagcatatt
gtatgtatgtacacatacccacacacatgcatatatatgtaacaataatt
aaagcggaagtcatgagtttgagagggagttgggagcatgggagagttgg
aagttggaaatgacatatagtagtcataggtaaattcaccccctctccaa
attaagttaaaaaagaagcagaaggcaataaacctaatggaacaataaat
gtaaagtcatctggttagggagaaaaattagcttgataaagaaagctaca
tctagacattgccgtgacctgttggatctaatagaaaacatttagatatc
tagtttaaatattgcaatggtcgagttgaataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19094316_19095584
seq2: B6Ng01-064B14.b_47_1263 (reverse)

seq1  GTCCCAGGTATTGTGAGGTGTGAACAAGTGCTGGTATCTATGTAAATGTG  50
      |||||||||||| ||||| ||| ||| ||||  |||||    | |||| |
seq2  GTCCCAGGTATT-TGAGG-GTG-ACACGTGCGTGTATC----TGAATG-G  42

seq1  AATCCAGAAGGCTATATGTTTCCTGGACTCTGGCCTTCTATTTATGTCTC  100
      | ||   ||||| ||    ||||  || ||| ||||  ||||  ||| ||
seq2  ATTC---AAGGCAAT---GTTCC--GAATCTCGCCT--TATTAGTGT-TC  81

seq1  CAATATATTACTTTATAACTGGATCAGTCTATTTTCCTGAAGGAAC-AGT  149
      ||  ||||  |||  |||| |||||||||||||    |  ||||||  ||
seq2  CATAATAT--CTT--TAACCGGATCAGTCTATT----TCGAGGAACGTGT  123

seq1  GTTGTTTGTGTTATCTTTTCTTTTCAATGTAGTCTAATTCATTCTTCCTG  199
      ||||     |||||||||   ||||| ||  |||| ||||| |||  |||
seq2  GTTG-----GTTATCTTT--CTTTCAGTGAGGTCT-ATTCA-TCT--CTG  162

seq1  TAGA-GAGGTCTCAGGTAGAAGGTAACCAAGATTGTTGTAATGGTGTAGA  248
      |||| ||||||||  |||||| |||  | |||||| |||||||| |||||
seq2  TAGAGGAGGTCTCCAGTAGAA-GTA--CCAGATTG-TGTAATGG-GTAGA  207

seq1  AAATGGGCTAAACACATACAAATAGAGAGAAGCATTCATTTGGCGTGGTT  298
      |||| ||||  ||||||    ||||||   |||| ||| ||||||||| |
seq2  AAAT-GGCT--ACACAT---CATAGAGGAGAGCA-TCA-TTGGCGTGG-T  248

seq1  CTGCATGGAGAAGGGATTACATTTATTATGAAATTGGCTGCTTGTTATGG  348
      |||||| ||||||||| |||||||||||||||||||||||| ||||||||
seq2  CTGCAT-GAGAAGGGA-TACATTTATTATGAAATTGGCTGC-TGTTATGG  295

seq1  GTATTTGTAGTTGCTTCCACTTTCCCTCCTTTGATCATTATTATAGCACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTAGTTGCTTCCACTTTCCCTCCTTTGATCATTATTATAGCACC  345

seq1  TGTCACACAATCAATAAATATTAATCAAATT-AAATGAATATTTGGTGTG  447
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTCACACAATCAATAAATATTAATCAAATTAAAATGAATATTTGGTGTG  395

seq1  CATTTTTGTAACTATACCACCAGAGAGTTGAGCAATGAATGGACAAATGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGTAACTATACCACCAGAGAGTTGAGCAATGAATGGACAAATGG  445

seq1  CCATATCGAAAGACACCAGAGGAAAAGGTTGCTTTGACTCTCATTAGTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCGAAAGACACCAGAGGAAAAGGTTGCTTTGACTCTCATTAGTTA  495

seq1  GTAAGGGTTAGAGATGGTGGATGACTCCAAAGAAACAGTGTCTTTCAGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGTTAGAGATGGTGGATGACTCCAAAGAAACAGTGTCTTTCAGGA  545

seq1  ACGATAGGACTAATGTACAATGAATAGCATGCACAGGTTTAAGCCATAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATAGGACTAATGTACAATGAATAGCATGCACAGGTTTAAGCCATAGG  595

seq1  GGTGCCAATATTAAGACAGGGGAGTGGACAAGAAACTATCTGCAATTGAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAATATTAAGACAGGGGAGTGGACAAGAAACTATCTGCAATTGAT  645

seq1  GTCGACTGGCAAAAGAAAAATTAATTTTTCAAAGGAGTATTCCTGGTATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGACTGGCAAAAGAAAAATTAATTTTTCAAAGGAGTATTCCTGGTATA  695

seq1  TTAATCAAACCTCATGGTAGGCACAATGTCTAGGAGTAAATGGGTAACCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAAACCTCATGGTAGGCACAATGTCTAGGAGTAAATGGGTAACCC  745

seq1  AAAATGAACTCAATGATATGTTTGTCTCATGTTTCATTTGGGTGGTTTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACTCAATGATATGTTTGTCTCATGTTTCATTTGGGTGGTTTTT  795

seq1  TTTTTTTTTCTTTTATCTTACTTGTTTTTTGTTTACATATTTTGGTTTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTTTTATCTTACTTGTTTTTTGTTTACATATTTTGGTTTTC  845

seq1  ATGGTTTTTTATATGTATTTCTTGTTTTTTTTTGTGTGTGTACTTTTTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTTTATATGTATTTCTTGTTTTTTTTTGTGTGTGTACTTTTTAA  895

seq1  ATAGAGAGAAGGGAGTAGAATTGCGTTGAAGGAGAGATGGGGAATCTGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGAAGGGAGTAGAATTGCGTTGAAGGAGAGATGGGGAATCTGGG  945

seq1  TGGAGTTGGGGATAAGGGAAGCATGATCAGAATCTTTTGCCTAAGTTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTGGGGATAAGGGAAGCATGATCAGAATCTTTTGCCTAAGTTTTT  995

seq1  TTATTTAAAAATATGAAAATGGAAAATTGCAAAGCTTCTGCAAAGCAAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAAAATATGAAAATGGAAAATTGCAAAGCTTCTGCAAAGCAAAA  1045

seq1  AACACTTTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTT  1095

seq1  TACCTATCCCAAATCAGATAGGGGACTAATATCCAATATATATATAAAGA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATCCCAAATCAGATAGGGGACTAATATCCAATATATATATAAAGA  1145

seq1  ACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAATGGGG  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAATGGGG  1195

seq1  CTCAGAGCTGAACAAAGAATTC  1269
      ||||||||||||||||||||||
seq2  CTCAGAGCTGAACAAAGAATTC  1217

seq1: chr19_18935306_18936041
seq2: B6Ng01-064B14.g_330_1052

seq1  CACAGCTAATATATCACCACCAACACAACCTGATACTTAAGGTGCAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTAATATATCACCACCAACACAACCTGATACTTAAGGTGCAGGGA  50

seq1  GTTTCTTGAAGAAGGAAGTAGAGAAGTCGTAAGAGCCAGAGGACTAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGAAGAAGGAAGTAGAGAAGTCGTAAGAGCCAGAGGACTAAGAT  100

seq1  GTCTGCTTTAAAGTAGTGTCTTCTATATTTTCCAGGGAAACTGCATTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTTTAAAGTAGTGTCTTCTATATTTTCCAGGGAAACTGCATTCAT  150

seq1  GAAATCTTGAAAATATTGTTGCCTAAATAAGGTCTTCACAATAACATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTGAAAATATTGTTGCCTAAATAAGGTCTTCACAATAACATTAG  200

seq1  TTGATAGGCCAGTATGGATGCAGGATATCTCACAAGGGCCTACCCCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGGCCAGTATGGATGCAGGATATCTCACAAGGGCCTACCCCTAGA  250

seq1  TGGAAATCTACAGGCAATTGATGACTGCAGAGAGAGGCAGAATCGGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCTACAGGCAATTGATGACTGCAGAGAGAGGCAGAATCGGTCTT  300

seq1  CTCCAGAGACAAGCCCCCAATTAAGTAATTTATCTTGTCAACCCTTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGACAAGCCCCCAATTAAGTAATTTATCTTGTCAACCCTTGACA  350

seq1  GATACATATATAAGAAAGACTAAATGGGCTCAGCATATTGTATGTATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATATATAAGAAAGACTAAATGGGCTCAGCATATTGTATGTATGTA  400

seq1  CACATACCCACACACATGCATATATATGTAACAATAATTAAAGCGGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCCACACACATGCATATATATGTAACAATAATTAAAGCGGAAGT  450

seq1  CATGAGTTTGAGAGGGAGTTGGGAGCATGGGAGGAGTTGGAAGTTGGAAA  500
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATGAGTTTGAGAGGGAGTTGGGAGCATGGGA-GAGTTGGAAGTTGGAAA  499

seq1  TGACATATAGTAGTCATAGGTAAAATTCACCCCCTCTCCAAATTAAGTTA  550
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  TGACATATAGTAGTCATAGGT-AAATTCACCCCCTCTCCAAATTAAGTT-  547

seq1  AAAAAAGAAGCAGAAGCAAATAAACCTAATGGAAACAATAAATGTAAAGT  600
      ||||||||||||||||  |||||||||||||| |||||||||||||||||
seq2  AAAAAAGAAGCAGAAGGCAATAAACCTAATGG-AACAATAAATGTAAAGT  596

seq1  CATCT-GTTAGGGGAGAAAATTAGCTTGATAAAGAAAGCTACCATCTAGA  649
      ||||| |||||||   ||||||||||||||||||||||||| ||||||||
seq2  CATCTGGTTAGGGAGAAAAATTAGCTTGATAAAGAAAGCTA-CATCTAGA  645

seq1  CAATGCCGTGACCTGTTGGAATCCTATAGGAAAAACATTTAAGAATATTT  699
      || |||||||||||||||| |||  ||||  ||||||||||   |||| |
seq2  CATTGCCGTGACCTGTTGG-ATCTAATAG--AAAACATTTA--GATATCT  690

seq1  AGTTTAGAATATTGCAAATGGTCTGAGTTTGAATAGA  736
      |||||| |||||||| ||||||| ||| |||||||||
seq2  AGTTTA-AATATTGC-AATGGTC-GAG-TTGAATAGA  723