BAC Information

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BAC

Clone NameB6Ng01-065M24
Chromosome19 (Build37)
Map Location 21,866,789 - 21,867,814
singlet/doubletsinglet
Overlap geneTmem2
Upstream geneTmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik
Downstream geneEG433229, Trpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065M24.g
ACCDH885177
length1,004
definitionDH885177|Mus musculus domesticus DNA, BAC clone: B6Ng01-065M24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgaaaaaggatggtgctgatggtcatacaactttgcgaatata
attaatgtcactggataaaaaaaaaaaaaaaaagagatttatgcttgtct
tagcacattacgtgtttgagagctggggtgtggcctaagggtagagtgtg
tgcctcgagtataccaggtacttgatccccagcactgaaaatgtttttca
gggatcatgcctctaatctcagtatttgggaggctgaggcaggagcattg
acatgcttttgaggctagaccctgtctcaaaacaaagtcttaatgctatt
acattgtacacgttcaaaaccttctttcccttttcacagtgacagggtat
catgtatgccgctggttccaggggccactcccctgctttcctgcaacctc
aaaacggaaacggccaccgctcacctggttatgttcccgggaaggtggtt
cccttacgtcccgcgcctcctccaaagaaccacgcctccgccaaactgac
ctccaggagccaagacgccccagcgacctttgctttctcccccgaggagc
agcggactccgagcgagagccgaaagcggaagaggcacaagaacaccttc
atctgcttcgccataaccagcttctcgttctttgtggcgcttgcggtcat
tttgggaatatcctcaaaatactctccaaatggtatgtgctcctgcgtgt
gaatgggaatgaagtatgtgtgctgtgcgcacatatgtagagaaagcata
gtccaacagaagagctatggggagatgtagaaagccacttttaagaaaaa
cgccctggttgctgaacctggtggagctacttaatgcacacgtagtatga
ggtgggactgcttacacatgacaccgttgatgaggatctgtgagaatcgt
aaacgataacgctgccttctgttttcttttttttttcattttcctcgcca
ctgggactcaggctcagtcttcttgaggatcctgtaatgttctttacaat
cccc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_21866789_21867814
seq2: B6Ng01-065M24.g_71_1074

seq1  GAATTCCTGAAAAAGGATGGTGCTGATGGTCATACAACTTTACGAATATA  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATTCCTGAAAAAGGATGGTGCTGATGGTCATACAACTTTGCGAATATA  50

seq1  ATTAATGTCACTGGATAAAAAAAAAAAAAAAAAGAGATTTATGCTTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTCACTGGATAAAAAAAAAAAAAAAAAGAGATTTATGCTTGTCT  100

seq1  TAGCACATTACGTGTTTGAGAGCTGGGGTGTGGCCTAAGGGTAGAGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATTACGTGTTTGAGAGCTGGGGTGTGGCCTAAGGGTAGAGTGTG  150

seq1  TGCCTCGAGTATACCAGGTACTTGATCCCCAGCACTGAAAATGTTTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCGAGTATACCAGGTACTTGATCCCCAGCACTGAAAATGTTTTTCA  200

seq1  GGGATCATGCCTCTAATCTCAGTATTTGGGAGGCTGAGGCAGGAGCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCATGCCTCTAATCTCAGTATTTGGGAGGCTGAGGCAGGAGCATTG  250

seq1  TCATGCTTTTGAGGCTAGACCCTGTCTCAAAACAAAGTCTTAATGCTATT  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTTTTGAGGCTAGACCCTGTCTCAAAACAAAGTCTTAATGCTATT  300

seq1  ACATTGTACACGTTCAAAACCTTCTTTCCCTTTTCACAGTGACAGGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTACACGTTCAAAACCTTCTTTCCCTTTTCACAGTGACAGGGTAT  350

seq1  CATGTATGCCGCTGGTTCCAGGGGCCACTCCCCTGCTTTCCTGCAACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGCCGCTGGTTCCAGGGGCCACTCCCCTGCTTTCCTGCAACCTC  400

seq1  AAAACGGAAACGGCCACCGCTCACCTGGTTATGTTCCCGGGAAGGTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGGAAACGGCCACCGCTCACCTGGTTATGTTCCCGGGAAGGTGGTT  450

seq1  CCCTTACGTCCCGCGCCTCCTCCAAAGAACCACGCCTCCGCCAAACTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACGTCCCGCGCCTCCTCCAAAGAACCACGCCTCCGCCAAACTGAC  500

seq1  CTCCAGGAGCCAAGACGCCCCAGCGACCTTTGCTTTCTCCCCCGAGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGAGCCAAGACGCCCCAGCGACCTTTGCTTTCTCCCCCGAGGAGC  550

seq1  AGCGGACTCCGAGCGAGAGCCGAAAGCGGAAGAGGCACAAGAACACCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGACTCCGAGCGAGAGCCGAAAGCGGAAGAGGCACAAGAACACCTTC  600

seq1  ATCTGCTTCGCCATAACCAGCTTCTCGTTCTTTGTGGCGCTTGCGGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTCGCCATAACCAGCTTCTCGTTCTTTGTGGCGCTTGCGGTCAT  650

seq1  TTTGGGAATATCCTCAAAATACGCTCCAGATGGTATGTGCTCCTGCGTGT  700
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  TTTGGGAATATCCTCAAAATACTCTCCAAATGGTATGTGCTCCTGCGTGT  700

seq1  GAATGGGAATGAAGTATGTGTGCTGTGCGCACATATGTAGAGAAAGCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGAATGAAGTATGTGTGCTGTGCGCACATATGTAGAGAAAGCATA  750

seq1  GTCCAAAAGAAGAGCTAGGGGGAGAATGTAGAAAGCACACTTTAAAGAAA  800
      |||||| |||||||||| |||||| ||||||||||| |||||| ||||||
seq2  GTCCAACAGAAGAGCTATGGGGAG-ATGTAGAAAGC-CACTTTTAAGAAA  798

seq1  AAGGCCTTGGTTGCTGAGCCTGGCTGTAGCTACCTAATGCACAGGTAGGA  850
      || ||| |||||||||| ||||| || |||||| ||||||||| |||| |
seq2  AACGCCCTGGTTGCTGAACCTGG-TGGAGCTACTTAATGCACACGTAGTA  847

seq1  TGAGGTGTGACTGCTTACAAATGACAGCAGTTGTTTGAGGAGTCTGTGGG  900
      ||||||| ||||||||||| |||||| | ||||  |||||| |||||| |
seq2  TGAGGTGGGACTGCTTACACATGACA-CCGTTG-ATGAGGA-TCTGTGAG  894

seq1  AAATTGTAAATGAGAAGGCTTGTCTTTCTGTTTTTTTTTTTTTTTTTTTC  950
       ||| ||||| || || |||   | |||||    |||| |||||||||||
seq2  -AATCGTAAACGATAACGCT--GCCTTCTG----TTTTCTTTTTTTTTTC  937

seq1  TTTTTCCCTCCTCCACTGTGTCTCAGGGCTCAAGTCTTTCTTGGAGCATC  1000
       ||||||   | |||||| | |||| ||||| |||| ||||| ||| |||
seq2  ATTTTCC--TCGCCACTGGGACTCA-GGCTC-AGTC-TTCTT-GAGGATC  981

seq1  TCTGTAAATGTTCTTTACAAATCCCC  1026
       |||| |||||||||||| |||||||
seq2  -CTGT-AATGTTCTTTAC-AATCCCC  1004