BAC Information

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BAC

Clone NameB6Ng01-066I13
Chromosome19 (Build37)
Map Location 23,213,318 - 23,402,231
singlet/doubletdoublet
Overlap geneKlf9, Smc5, Mamdc2
Upstream geneTrpm3, EG433230
Downstream gene1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066I13.bB6Ng01-066I13.g
ACCDH885686DH885687
length1,149328
definitionDH885686|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I13, 5' end.DH885687|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,401,069 - 23,402,231)(23,213,318 - 23,213,645)
sequence
gaattcactcactgagtatggccttcgggaagctacctaaatccccagtt
gacttgacttctagaaaatgcgaataactacaactaccactcacttacct
aactacaaggagtggtccaagatcaaggtatccacatggttgctttcctc
tggcttgcaaatggctatcttctgcagtgtgcacacatggccctccttct
gtgacaacacatccctcatgtctctgtttttataacacttgtaccaaatg
gagatccaccctaacaatcctcttttaattcagtttcatcttgagaagcc
cagtctctaaatatagccccgctctgaggaatgaggttagggcttcatca
catgtgttttggagagaagcaacttaacccatagcagactccctcccagg
agtcagtgccatggaatggatatccaaagagaaggaaaaattctttcatg
ttaagtgggtgacagcccaggcctgctcctgggccttgtggctttgtgct
acactctaggcttgtctgactcataggatatgctccacctcctccacaca
cactcaaaactctatgaaattctatcaaaaacatgtgcaatatgtattaa
ataactcataactctagtcctttacggacatcattaccggctatgggaac
ctatgttaattagcttgggtggctttgtttaaagatggtgtggttaggtt
tcctttgtgtttttgaaaacttataaaactgtgtcatctggctagggtga
aacttcccagcaagaccatgaatacaaatgtttcttactgaactccatct
ttaatctgaatgaattctagacacatgaaatgaacttctctggtgcacag
tgtagagaatgttgttgtttttttaaataaattatttcacctgcttcaat
attaaattccaaaagattctcagatggcggtcagatttttatctagtaaa
atatttttggatttatctttttattcctgttgcatagcaatgcaagcaag
aaaacaaattctactatacaatggcccacggtactatagatataaagcat
tgggtaagggctctcaatactttaatgacctttcactgcaagctagggag
atggatgaacatttactctggtcagatccggcctgaatatatccttcct
ttttctaaaattaagattatcagaatgtgggctggagagatggctcagtg
gttaagagcactgactgctcttccagaggtcctgagttcaaatcccagca
aaccacatggtggctcataaccatctgtatggctttagtgtactcatata
cataaaataaataggtaaatgtttaaaaaaaagattatcagaatgtgctg
gacagtggtggtgcacacctttaatcccaacacttgggaggcagaggcag
ggggatttctgatttcgaggccagcctggtctacagagtgatttccagga
cagccaatgatacacatagaaaccctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_23401069_23402231
seq2: B6Ng01-066I13.b_47_1195 (reverse)

seq1  AGGAAGGATATAATGATTCTAGGCACAGAAACCTGACCAGAGTAAATGTT  50
      |||||||||||    |||| |||| | |  | ||||||||||||||||||
seq2  AGGAAGGATAT----ATTC-AGGC-CGG--ATCTGACCAGAGTAAATGTT  42

seq1  CATCACATCATCCCTAGCTTTACAGTGAGAGGGTCATTAAAGTAATTGAG  100
      |||| |||| |||||||| || |||||| | |||||||||||| ||||||
seq2  CATC-CATC-TCCCTAGC-TTGCAGTGA-AAGGTCATTAAAGT-ATTGAG  87

seq1  AGCCCTTACCCAATGCTATATATCTATAGGTACCGTGGG-CATAGTATAG  149
      ||||||||||||||||| |||||||||| |||||||||| ||| ||||||
seq2  AGCCCTTACCCAATGCTTTATATCTATA-GTACCGTGGGCCATTGTATAG  136

seq1  TAGAATTTGTTTTCTTGCTTGCATTGCTATGC-ACAGGAATAAAAAGATA  198
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGAATTTGTTTTCTTGCTTGCATTGCTATGCAACAGGAATAAAAAGATA  186

seq1  GATCCAAAAATATTTTACTAGATAAAAATCTGAACGGCATCTTGAGAATC  248
       |||||||||||||||||||||||||||||||| || |||| ||||||||
seq2  AATCCAAAAATATTTTACTAGATAAAAATCTGACCGCCATC-TGAGAATC  235

seq1  TTTTGGAATTTAATATTGAAGCAGGTGAAATAATTTATTTAAAAAAAACA  298
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTGGAATTTAATATTGAAGCAGGTGAAATAATTTATTT-AAAAAAACA  284

seq1  ACAACATTCTCTACACTGTGCACCAGAGAAGTTCATTTCATGTGTCTAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTCTCTACACTGTGCACCAGAGAAGTTCATTTCATGTGTCTAGA  334

seq1  ATTCATTCAGATTAAAGATGGAGTTCAGTAAGAAACATTTGTATTCATGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCAGATTAAAGATGGAGTTCAGTAAGAAACATTTGTATTCATGG  384

seq1  TCTTGCTGGGAAGTTTCACCCTAGCCAGATGACACAGTTTTATAAGTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGGGAAGTTTCACCCTAGCCAGATGACACAGTTTTATAAGTTTT  434

seq1  CAAAAACACAAAGGAAACCTAACCACACCATCTTTAAACAAAGCCACCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACACAAAGGAAACCTAACCACACCATCTTTAAACAAAGCCACCCA  484

seq1  AGCTAATTAACATAGGTTCCCATAGCCGGTAATGATGTCCGTAAAGGACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATTAACATAGGTTCCCATAGCCGGTAATGATGTCCGTAAAGGACT  534

seq1  AGAGTTATGAGTTATTTAATACATATTGCACATGTTTTTGATAGAATTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATGAGTTATTTAATACATATTGCACATGTTTTTGATAGAATTTC  584

seq1  ATAGAGTTTTGAGTGTGTGTGGAGGAGGTGGAGCATATCCTATGAGTCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTTTTGAGTGTGTGTGGAGGAGGTGGAGCATATCCTATGAGTCAG  634

seq1  ACAAGCCTAGAGTGTAGCACAAAGCCACAAGGCCCAGGAGCAGGCCTGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCTAGAGTGTAGCACAAAGCCACAAGGCCCAGGAGCAGGCCTGGG  684

seq1  CTGTCACCCACTTAACATGAAAGAATTTTTCCTTCTCTTTGGATATCCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCCACTTAACATGAAAGAATTTTTCCTTCTCTTTGGATATCCAT  734

seq1  TCCATGGCACTGACTCCTGGGAGGGAGTCTGCTATGGGTTAAGTTGCTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCACTGACTCCTGGGAGGGAGTCTGCTATGGGTTAAGTTGCTTC  784

seq1  TCTCCAAAACACATGTGATGAAGCCCTAACCTCATTCCTCAGAGCGGGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAAACACATGTGATGAAGCCCTAACCTCATTCCTCAGAGCGGGGC  834

seq1  TATATTTAGAGACTGGGCTTCTCAAGATGAAACTGAATTAAAAGAGGATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAGAGACTGGGCTTCTCAAGATGAAACTGAATTAAAAGAGGATT  884

seq1  GTTAGGGTGGATCTCCATTTGGTACAAGTGTTATAAAAACAGAGACATGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGTGGATCTCCATTTGGTACAAGTGTTATAAAAACAGAGACATGA  934

seq1  GGGATGTGTTGTCACAGAAGGAGGGCCATGTGTGCACACTGCAGAAGATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTGTTGTCACAGAAGGAGGGCCATGTGTGCACACTGCAGAAGATA  984

seq1  GCCATTTGCAAGCCAGAGGAAAGCAACCATGTGGATACCTTGATCTTGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGCAAGCCAGAGGAAAGCAACCATGTGGATACCTTGATCTTGGA  1034

seq1  CCACTCCTTGTAGTTAGGTAAGTGAGTGGTAGTTGTAGTTATTCGCATTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCTTGTAGTTAGGTAAGTGAGTGGTAGTTGTAGTTATTCGCATTT  1084

seq1  TCTAGAAGTCAAGTCAACTGGGGATTTAGGTAGCTTCCCGAAGGCCATAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGTCAAGTCAACTGGGGATTTAGGTAGCTTCCCGAAGGCCATAC  1134

seq1  TCAGTGAGTGAATTC  1163
      |||||||||||||||
seq2  TCAGTGAGTGAATTC  1149

seq1: chr19_23213318_23213645
seq2: B6Ng01-066I13.g_75_402

seq1  TTTTCTAAAATTAAGATTATCAGAATGTGGGCTGGAGAGATGGCTCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAAATTAAGATTATCAGAATGTGGGCTGGAGAGATGGCTCAGTG  50

seq1  GTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCA  100

seq1  AACCACATGGTGGCTCATAACCATCTGTATGGCTTTAGTGTACTCATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATGGTGGCTCATAACCATCTGTATGGCTTTAGTGTACTCATATA  150

seq1  CATAAAATAAATAGGTAAATGTTTAAAAAAAAGATTATCAGAATGTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATAAATAGGTAAATGTTTAAAAAAAAGATTATCAGAATGTGCTG  200

seq1  GACAGTGGTGGTGCACACCTTTAATCCCAACACTTGGGAGGCAGAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGTGGTGCACACCTTTAATCCCAACACTTGGGAGGCAGAGGCAG  250

seq1  GGGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAATTCCAGGA  300
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  GGGGATTTCTGATTTCGAGGCCAGCCTGGTCTACAGAGTGATTTCCAGGA  300

seq1  CAGCCAAGGATACACAGAGAAACCCTGT  328
      ||||||| |||||||| |||||||||||
seq2  CAGCCAATGATACACATAGAAACCCTGT  328