BAC Information

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BAC

Clone NameB6Ng01-069L02
Chromosome19 (Build37)
Map Location 47,393,424 - 47,527,937
singlet/doubletdoublet
Overlap geneSh3pxd2a
Upstream genePsd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070
Downstream geneObfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576, Sorcs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069L02.bB6Ng01-069L02.g
ACCDH887925DH887926
length1051,012
definitionDH887925|Mus musculus domesticus DNA, BAC clone: B6Ng01-069L02, 5' end.DH887926|Mus musculus domesticus DNA, BAC clone: B6Ng01-069L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,393,424 - 47,393,528)(47,526,908 - 47,527,937)
sequence
gaattcccccaacattccagcagagaaaccaaagctaggacactgtagcc
ttggactcagttggctgtccctgcactctagggtggggactggggtgggg
ggggg
gaattcccagggtcatggatgaccgctgcaattcacctgcccgctctgat
ctctgagcccctgcattaacaccgtgtggttgcagctggcaattgaaata
aacttcaaagtggtccagagccacttttgaatccggctgccaggggctct
ctgtctttcctttcttttcctttcttttcctttcctttcctttcctttcc
tttcctttcctttcctttcctttcctttcctttcctttcctttccttttc
tttcttttcttttcttttcttttttttttggtttttcgagacagggtttc
tctgtgtagctctggctatcctagaactcactttgtaggccaggctggcc
tcgaactcagaaatctgcctgcctctgcctcccgagtgctgggattaaag
gcgtgcgccaccacacccagctctctgtcctttctttagagatgatgact
ctcgtggcattgtggttgggatcaggggacagtttaagtcattaagtcat
tctcatcctgacgcttgctaaggtaaatccaagctctaggacctagagtg
acctccggagagacttgggtggcagccagcagaagcagggagccagagga
tgtaggacgggtgctgacagcctcttccacgtgggctgaggtgaggactt
ggaaaatcagtcctgagttgtggccttggctctctctgccttgctggttt
cacgtggtcacctttgttcaagcccatgggcttccgtttctgctgaaatg
atgataatcatcctaatacttagctcatgtggtttgtgactctttatgat
gatcagagttcgataggtgtcagctttgttattaccaccgtatcatcctt
catgatttttttaaataccttctagagcttctctgacctcacatctagaa
tatttcctgcgagtattagccgttttggtggactgagttgtcagctctta
gcagctgtaactacagtcgtccattgtcagaattggaatgttcctagctc
caggcaagggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_47393424_47393528
seq2: B6Ng01-069L02.b_45_149

seq1  GAATTCCCCCAACATTCCAGCAGAGAAACCAAAGCTAGGACACTGTAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCAACATTCCAGCAGAGAAACCAAAGCTAGGACACTGTAGCC  50

seq1  TTGGACTCAGTTGGCTGTCCCTGCACTCTAGGGTGGGGACTGGGGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTCAGTTGGCTGTCCCTGCACTCTAGGGTGGGGACTGGGGTGGGG  100

seq1  GGGGG  105
      |||||
seq2  GGGGG  105

seq1: chr19_47526908_47527937
seq2: B6Ng01-069L02.g_69_1074 (reverse)

seq1  TGCCTGGAGCCTAGGAAACATTCCAAATACTGGACAAATGGACGACCTGT  50
      ||||||||| ||||| |||||||| ||| || ||| ||||||||| ||||
seq2  TGCCTGGAG-CTAGG-AACATTCC-AATTCT-GAC-AATGGACGA-CTGT  44

seq1  AAGTTTACAGCTTGCTAAGAGCTGACCAACCTCAGGTCACACAAAAC-GC  99
      |   ||||||| ||||||||||||||  | |||||  ||| |||||| ||
seq2  A--GTTACAGC-TGCTAAGAGCTGAC--AACTCAGTCCAC-CAAAACGGC  88

seq1  TAATACCTCGCAGGAAATATTCCTAAGATGTGAGGTCAGAGAAGCTTCTA  149
      ||||| ||||||||||||||||   |||||||||||||||||||| ||||
seq2  TAATA-CTCGCAGGAAATATTC--TAGATGTGAGGTCAGAGAAGC-TCTA  134

seq1  GAAGGTAATTTAAAAAAATCATGAAGGATGATAACGGTGGTAATAACAAC  199
      |||||| ||||||||||||||||||||||||| |||||||||||||||| 
seq2  GAAGGT-ATTTAAAAAAATCATGAAGGATGAT-ACGGTGGTAATAACAA-  181

seq1  AGCTGACACCTATCGAACCTCTGATCATCATAAAGAGTCACAAACCACAT  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCTGACACCTATCGAA-CTCTGATCATCATAAAGAGTCACAAACCACAT  230

seq1  GAGCTAAGTATTAGGATGATTATCATCATTTCAGCAGAAACGGAAGCCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAGTATTAGGATGATTATCATCATTTCAGCAGAAACGGAAGCCCA  280

seq1  TGGGCTTGAACAAAGGTGACCACGTGAAACCAGCAAGGCAGAGAGAGCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGAACAAAGGTGACCACGTGAAACCAGCAAGGCAGAGAGAGCCA  330

seq1  AGGCCACAACTCAGGACTGATTTTCCAAGTCCTCACCTCAGCCCACGTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACAACTCAGGACTGATTTTCCAAGTCCTCACCTCAGCCCACGTGG  380

seq1  AAGAGGCTGTCAGCACCCGTCCTACATCCTCTGGCTCCCTGCTTCTGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCTGTCAGCACCCGTCCTACATCCTCTGGCTCCCTGCTTCTGCTG  430

seq1  GCTGCCACCCAAGTCTCTCCGGAGGTCACTCTAGGTCCTAGAGCTTGGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCACCCAAGTCTCTCCGGAGGTCACTCTAGGTCCTAGAGCTTGGAT  480

seq1  TTACCTTAGCAAGCGTCAGGATGAGAATGACTTAATGACTTAAACTGTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTAGCAAGCGTCAGGATGAGAATGACTTAATGACTTAAACTGTCC  530

seq1  CCTGATCCCAACCACAATGCCACGAGAGTCATCATCTCTAAAGAAAGGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCCCAACCACAATGCCACGAGAGTCATCATCTCTAAAGAAAGGAC  580

seq1  AGAGAGCTGGGTGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTGGGTGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGC  630

seq1  AGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGCCTACAAAGTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGCCTACAAAGTGAG  680

seq1  TTCTAGGATAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAACCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGATAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAACCAAA  730

seq1  AAAAAAAGAAAAGAAAAGAAAAGAAAGAAAAGGAAAGGAAAGGAAAGGAA  799
      ||||||||||||||||||||||||||||     |||||||||||||||||
seq2  AAAAAAAGAAAAGAAAAGAAAAGAAAGA-----AAAGGAAAGGAAAGGAA  775

seq1  AGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAA  825

seq1  AGGAAAAGAAAGGAAAAGAAAGGAAAGACAGAGAGCCCCTGGCAGCCGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAAAGGAAAAGAAAGGAAAGACAGAGAGCCCCTGGCAGCCGGA  875

seq1  TTCAAAAGTGGCTCTGGACCACTTTGAAGTTTATTTCAATTGCCAGCTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGTGGCTCTGGACCACTTTGAAGTTTATTTCAATTGCCAGCTGC  925

seq1  AACCACACGGTGTTAATGCAGGGGCTCAGAGATCAGAGCGGGCAGGTGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACGGTGTTAATGCAGGGGCTCAGAGATCAGAGCGGGCAGGTGAA  975

seq1  TTGCAGCGGTCATCCATGACCCTGGGAATTC  1030
      |||||||||||||||||||||||||||||||
seq2  TTGCAGCGGTCATCCATGACCCTGGGAATTC  1006