BAC Information

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BAC

Clone NameB6Ng01-071F03
Chromosome19 (Build37)
Map Location 45,590,150 - 45,702,250
singlet/doubletdoublet
Overlap geneBtrc, Poll, 5330431N19Rik, Fbxw4
Upstream geneSec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, EG627889
Downstream geneFgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071F03.bB6Ng01-071F03.g
ACCDH889053DH889054
length1,1231,127
definitionDH889053|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F03, 5' end.DH889054|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,701,113 - 45,702,250)(45,590,150 - 45,591,300)
sequence
gaattctcttctaaaaaagcttgtgctggacattctgacttcacactagc
catctagggcatgtgctagggttttattgtccccccctttttgtatttag
aaatatatgggctaggatctctatactgtattattaggtccatgtctctc
cactttgtccatgactttgagtctttaaataagtaaataaataaataaaa
acacaccaaaaaaaatttctctaagcctggtagtggcagcacacaccttt
aatccctgcattgggaggcagaggcaggcagatatctgtgagttcgaggc
cagcctggtgtacagagcgagttccaggactgccaaggctacacagagaa
accctgtctcaaaaaaaaaaaaaagcaagctctccaggtgggcatggtag
agcctgccttttcctagtactctggaggaagaggcaggtggatttctgtg
agtgccaggtcagccagtgctgcagagcaacgcctgtcttttctttgaag
ctccagctctcagcttcgaggcactccctcagcgtcttatctagtgcagc
atgtgcttagtgcttccaagcttgggcttccctggtccttctgcctccca
ggaggtgcatggttcttttgtagtttgcttgaggtggcatctccatggga
atctctcttccctgtcctcttcctttgaagtgatcctcactggctgcctt
ctgtcacctccctgccactgttcctgctgaatgtgtttgtcggtcactga
gttggcaacgtgaggggttgtgagcagccactgtcctctgaggacaggcg
cttcgcttccctcgatgcttcgcttccttctcagtgagcgtctttctcct
gttaacagtcggtcctgtgcactttgttgatgatgttctttgtttctaag
tttccccttcttttcatgtgtttgtacccagggacttttagcataaatat
gggccccaaactccaggcttatatgaggtgcttctgaccaatagaaagca
gagattctgacctggctctagtatcacctttgttctgtgactttgaattt
tatttgcaaacattgtagagtgatatttaatagcagttatgtgctcagat
tatttgtttattttttatttttg
gaattcaaggacatcctggtctacagagtgagttccaggacagccaggac
tacacagaaacccccgtctccaaaagaaaaagaaagcaggggtgacatgc
attgattgattgattgattgattgattatcccattggtggtcaagaatag
gccgtgcgttgtactaagtaccatctgattcctgggtgtccttttcagag
tgtgggatgtaaatgcaggtgagatgctaaacacattgattcaccactgt
gaagccgttctgcacctgcgcttcaataatggcatgatggtgacctgttc
caaagaccgttccatcgctgtgtgggatatggcttccccaactgacatca
ccctcaggagggtgctggtgggacaccgagctgcggtcaatgttgtagac
tttgatgacaagtacatcgtttctgcctctggagatagaaccataaaggt
aacaggtcacttttcagtaagttcacaagctgcagtaggagtttgtgtaa
aagcgtgattgagggcaactgtatacacaagccttgttgtaggatactgt
aataattaaattcaatttttatttctataaacaatggttatgggctggag
gtgtagcttaatgacggcacttacctggtgtgcccaagagccagattgga
aagataacagtgccactgatgatggcagtgatggcatgcatggcgaaagc
caagccaaagttaagttcaaggacacatccgtactggagctggggaaacg
gccagtgtgaacaggccttgccgcatatgcgtgagaaccgccatgggaaa
gccagatgtgtcaccatgaggtagtgatctcattgctcagaagggagcga
tgccaaaccctgtggtcgctggccagtcgttctagccagatagtaagttt
tgtattcaaagtccctgtctaggagaatgaggtagaggggttgtcaagga
cgccaagtcctgagttgagttgtagcatgacgatagtggcccaaaccatc
tggacctctagcttcagagcccaatttcgcctctgattctgctcacatgt
ggtacaccacactcagcagtacatatcctaaactaggtgagactaggcga
ccctaagtatgccgactcagaaaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45701113_45702250
seq2: B6Ng01-071F03.b_43_1165 (reverse)

seq1  CAAAAATAAAAAATAAAACAAATATATCCTTGAGCACATAACTGCTATTA  50
      |||||||||||||| ||||||||| |||  ||||||||||||||||||||
seq2  CAAAAATAAAAAAT-AAACAAATA-ATC--TGAGCACATAACTGCTATTA  46

seq1  AATATCACCTCTACAATTGTTTGCAAATTAAAAATTCAAAGTCACAGAAA  100
      ||||||| |||||||| |||||||||||  ||||||||||||||||||| 
seq2  AATATCA-CTCTACAA-TGTTTGCAAAT--AAAATTCAAAGTCACAGAA-  91

seq1  CAAAAGGTGATACTTAGAGCCAGGTCAGAATCTCTGCTTTCTATTGGTCA  150
        ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  -CAAAGGTGATAC-TAGAGCCAGGTCAGAATCTCTGCTTTCTATTGGTCA  139

seq1  GAAGCACCTCATATTAAGCCTGGAGTTTTGGGGCCCATATTTTATGCTAA  200
      ||||||||||||| ||||||||||| ||||||||||||| ||||||||||
seq2  GAAGCACCTCATA-TAAGCCTGGAG-TTTGGGGCCCATA-TTTATGCTAA  186

seq1  AAGTTCCTGGGTACAAACACATGAAAAGAAGGGGAAACTTAGAAACAAAG  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTGGGTACAAACACATGAAAAGAAGGGGAAACTTAGAAACAAAG  236

seq1  AACATCATCAACAAAGTGCACAGGACCGACTGTTTAACAGGAGAAAGACG  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACATCATCAACAAAGTGCACAGGACCGACTG-TTAACAGGAGAAAGACG  285

seq1  CTCACTGAGAAGGAAGCGAAGCATCGAGGGAAGCGAAGCGCCTGTCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGAGAAGGAAGCGAAGCATCGAGGGAAGCGAAGCGCCTGTCCTCA  335

seq1  GAGGACAGTGGCTGCTCACAACCCCTCACGTTGCCAACTCAGTGACCGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGTGGCTGCTCACAACCCCTCACGTTGCCAACTCAGTGACCGAC  385

seq1  AAACACATTCAGCAGGAACAGTGGCAGGGAGGTGACAGAAGGCAGCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTCAGCAGGAACAGTGGCAGGGAGGTGACAGAAGGCAGCCAGT  435

seq1  GAGGATCACTTCAAAGGAAGAGGACAGGGAAGAGAGATTCCCATGGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCACTTCAAAGGAAGAGGACAGGGAAGAGAGATTCCCATGGAGAT  485

seq1  GCCACCTCAAGCAAACTACAAAAGAACCATGCACCTCCTGGGAGGCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTCAAGCAAACTACAAAAGAACCATGCACCTCCTGGGAGGCAGAA  535

seq1  GGACCAGGGAAGCCCAAGCTTGGAAGCACTAAGCACATGCTGCACTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGGGAAGCCCAAGCTTGGAAGCACTAAGCACATGCTGCACTAGAT  585

seq1  AAGACGCTGAGGGAGTGCCTCGAAGCTGAGAGCTGGAGCTTCAAAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGCTGAGGGAGTGCCTCGAAGCTGAGAGCTGGAGCTTCAAAGAAAA  635

seq1  GACAGGCGTTGCTCTGCAGCACTGGCTGACCTGGCACTCACAGAAATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCGTTGCTCTGCAGCACTGGCTGACCTGGCACTCACAGAAATCCA  685

seq1  CCTGCCTCTTCCTCCAGAGTACTAGGAAAAGGCAGGCTCTACCATGCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTTCCTCCAGAGTACTAGGAAAAGGCAGGCTCTACCATGCCCA  735

seq1  CCTGGAGAGCTTGCTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGAGCTTGCTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAG  785

seq1  CCTTGGCAGTCCTGGAACTCGCTCTGTACACCAGGCTGGCCTCGAACTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCAGTCCTGGAACTCGCTCTGTACACCAGGCTGGCCTCGAACTCA  835

seq1  CAGATATCTGCCTGCCTCTGCCTCCCAATGCAGGGATTAAAGGTGTGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATCTGCCTGCCTCTGCCTCCCAATGCAGGGATTAAAGGTGTGTGC  885

seq1  TGCCACTACCAGGCTTAGAGAAATTTTTTTTGGTGTGTTTTTATTTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTACCAGGCTTAGAGAAATTTTTTTTGGTGTGTTTTTATTTATTT  935

seq1  ATTTACTTATTTAAAGACTCAAAGTCATGGACAAAGTGGAGAGACATGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTATTTAAAGACTCAAAGTCATGGACAAAGTGGAGAGACATGGA  985

seq1  CCTAATAATACAGTATAGAGATCCTAGCCCATATATTTCTAAATACAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAATACAGTATAGAGATCCTAGCCCATATATTTCTAAATACAAAA  1035

seq1  AGGGGGGGACAATAAAACCCTAGCACATGCCCTAGATGGCTAGTGTGAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGGACAATAAAACCCTAGCACATGCCCTAGATGGCTAGTGTGAAG  1085

seq1  TCAGAATGTCCAGCACAAGCTTTTTTAGAAGAGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATGTCCAGCACAAGCTTTTTTAGAAGAGAATTC  1123

seq1: chr19_45590150_45591300
seq2: B6Ng01-071F03.g_67_1193

seq1  GAATTCAAGGACATCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACATCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGAC  50

seq1  TACACAGAAACCCCCGTCTCCAAAAGAAAAAGAAAGCAGGGGTGACATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAAACCCCCGTCTCCAAAAGAAAAAGAAAGCAGGGGTGACATGC  100

seq1  ATTGATTGATTGATTGATTGATTGATTATCCCATTGGTGGTCAAGAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGATTGATTGATTGATTGATTATCCCATTGGTGGTCAAGAATAG  150

seq1  GCCGTGCGTTGTACTAAGTACCATCTGATTCCTGGGTGTCCTTTTCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGCGTTGTACTAAGTACCATCTGATTCCTGGGTGTCCTTTTCAGAG  200

seq1  TGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGT  250

seq1  GAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTC  300

seq1  CAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCA  350

seq1  CCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGAC  400

seq1  TTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAGGT  450

seq1  AACAGGTCACTTTTCAGTAAGTTCACAAGCTGCAGTAGGAGTTTGTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTCACTTTTCAGTAAGTTCACAAGCTGCAGTAGGAGTTTGTGTAA  500

seq1  AAGCGTGATTGAGGGCAACTGTATACACAAGCCTTGTTGTAGGATACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTGATTGAGGGCAACTGTATACACAAGCCTTGTTGTAGGATACTGT  550

seq1  AATAATTAAATTCAATTTTTATTTCTATAAACAATGGTTATGGGCTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAAATTCAATTTTTATTTCTATAAACAATGGTTATGGGCTGGAG  600

seq1  GTGTAGCTTAATGACGGCACTTACCTGGTGTGCCCAAGAGCCAGATTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTTAATGACGGCACTTACCTGGTGTGCCCAAGAGCCAGATTGGA  650

seq1  AAGATAACAGTGCCACTGATGATGGCAGTGATGGCATGCATGGCGAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAACAGTGCCACTGATGATGGCAGTGATGGCATGCATGGCGAAAGC  700

seq1  CAAGCCAAAGTTAAGTTCAAGGACACATCCGTACTGGAGCTGGGGAAACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAAAGTTAAGTTCAAGGACACATCCGTACTGGAGCTGGGGAAACG  750

seq1  GCCAGTGTGAACAGGCCTTGCCGCATATGCGTGAGAACCGCCATGGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGTGAACAGGCCTTGCCGCATATGCGTGAGAACCGCCATGGGAAA  800

seq1  GCCAGATGTGTCACCATGAGGTAGTGATCTCATTGCTCAGAAGGGAGCGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATGTGTCACCATGAGGTAGTGATCTCATTGCTCAGAAGGGAGCGA  850

seq1  TGCCAAACCCTGTGGTCGCTGGCCAGTCGTTCTAGCCAGATAGTAAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAACCCTGTGGTCGCTGGCCAGTCGTTCTAGCCAGATAGTAAGTTT  900

seq1  TGTATTCAAAGTCCCTGTCTAGGAGAATGAGGTAGAGGGGTTGTCAAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCAAAGTCCCTGTCTAGGAGAATGAGGTAGAGGGGTTGTCAAGGA  950

seq1  CGCCAAGGTCCTGAGTTGAGTTGTTAGCATGACGATAGTGGCCCAAACCA  1000
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  CGCCAA-GTCCTGAGTTGAGTTG-TAGCATGACGATAGTGGCCCAAACCA  998

seq1  TCTGGACCTCTAGCTCCAGAGGCCCCAATTTCCGGCCTCTGGATTCTGGC  1050
      ||||||||||||||| |||||  |||||||||  |||||| |||||| ||
seq2  TCTGGACCTCTAGCTTCAGAG--CCCAATTTC--GCCTCT-GATTCT-GC  1042

seq1  TCACATGTGGTACACACAAACTCAAGCAGTTACATATACACATAAAAAAT  1100
      ||||||||||||||| || |||| ||||| ||||||| |       ||| 
seq2  TCACATGTGGTACAC-CACACTC-AGCAG-TACATATCC------TAAAC  1083

seq1  AAGGTGGAAGGAACTAAGGCGGACACTAAGTATGCAGACTCAGGAAAGGA  1150
       |||||  ||  ||| |||| ||| |||||||||| |||||| |||||||
seq2  TAGGTG--AG--ACT-AGGC-GACCCTAAGTATGCCGACTCA-GAAAGGA  1126

seq1  G  1151
      |
seq2  G  1127