BAC Information

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BAC

Clone NameB6Ng01-071M01
Chromosome19 (Build37)
Map Location 38,420,843 - 38,562,804
singlet/doubletdoublet
Overlap geneTmem20, LOC100042483
Upstream geneKif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1
Downstream genePlce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071M01.bB6Ng01-071M01.g
ACCDH889361DH889362
length8151,214
definitionDH889361|Mus musculus domesticus DNA, BAC clone: B6Ng01-071M01, 5' end.DH889362|Mus musculus domesticus DNA, BAC clone: B6Ng01-071M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,561,990 - 38,562,804)(38,420,843 - 38,422,063)
sequence
gaattcattctgcctttgtgggtgaaaaagtggagacaaaaatctcatgc
caagagtctttaacttccgtgaatattatccacctcccagagattgacaa
aagaggctggcgggaaccctgcagttcttcccagcaagggtttccctggt
gaaaagatgatcaacaacgaagtctgatcttgttttgcagaatagctaat
gaatgggcactttctttagaaagatagcttttgaagcaactccggtgtta
ttcaaattaaagctcgttacatgatattttaatcccagacgtgtatagca
tgctctgggtcacatgtgttttccccagatgattttctttccactccctg
gattttccatactcagtaatattatatagtttaaacttacaatgaagtca
tcaaaacagagtctctccttgcttctgcctcttttgattctgaataaaga
acccacactgtttaaatactacaatgtagctagttgctcctaccaagaaa
tacaaatacacaattgccagctgacttctgggtgagggtgtacccacaga
ccccctttaaaagagacctttcacagttactgtgagcggtgggtggtgga
ggctgtggccagagcactctcgccaccaagcagagagatacaacaggtct
caggcacactgataatgaacctggctgacatgaactggccagtcctatct
attagccctatgaagattggcgacactgctttttttccccaggtgcttgg
ctctcacccttgtgctcccgacctcactgaagggataccaccatctgggt
tggggggtggggagg
gaattctgcccttgaagaagagatgtgttgggaacattgtcatcatgcaa
agaagggaacgctaaaagacataaaaatatccatcaaaggcaccttttct
tatgtcaggagattggatttaagatatgcatatagttccgtggccatttt
gatgatcttatttgtgagatgtttctcacttcttttgcaggtgatctgat
cagtgatgcctaaattccaggatgtcatccaatgagacaaattggagcca
gagttagatattaagagtaaagggccctctccatcctcatacccccttta
ttttctgactatctagtcttcccagggggcagttcacaatagccagagca
aacagtccggcctgtacattttctgctgcccctgtatggaatcttatttt
tggtattctgatacttacatctgttgactcactgaccctagaatgggtgt
ccatctggtgctaaccagtcccaaagtcaggaaagctctcaggtattgtg
cctgtcttatgcagaataatgactccagaagctccctgttgccactcttg
aggtcttcacactcaggatcactattctgaaaccctaagcattcttaggt
cagttatcaaagaatcatagatagctcccctacaccctaggccagctaaa
gttacttaagccagccaaggttaagcctttccgcctacagtaaaaattac
cctagcatactgcagttctgggcaccatccacacatatccatagacccca
atgattgccaataaaatgacatgccatcatctgtggtggtttgaaataaa
aatggtcccataggcccatagggagtggcactattagaaggtatttcttt
gttgggagtaggtgtggccttgctaaaggaggtgtgtcattaggaagtga
gctttgagtctcagaagctcaaggctagccagtatctcagatcaggacaa
ttctcatgcagccaacagattcaagtgtagaactcacttacctctcagcg
tcatgtctgcctgcttgctaagccgtatgtcaccatcaccatgctctctg
gcatgatgataacgggctaacttctcaactgtaagccagcctcaataaaa
tattttcctttgtagaagtgcactggttcatggtgtctctgacaacaata
aaagcagaccaggactctatatataccatctctcccggagttaagcatga
cagactacccttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38561990_38562804
seq2: B6Ng01-071M01.b_43_857 (reverse)

seq1  CCTCCCCACCCCCCAACCCAGATGGTGGTATCCCTTCAGTGAGGTCGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCACCCCCCAACCCAGATGGTGGTATCCCTTCAGTGAGGTCGGGA  50

seq1  GCACAAGGGTGAGAGCCAAGCACCTGGGGAAAAAAAGCAGTGTCGCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGGGTGAGAGCCAAGCACCTGGGGAAAAAAAGCAGTGTCGCCAAT  100

seq1  CTTCATAGGGCTAATAGATAGGACTGGCCAGTTCATGTCAGCCAGGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAGGGCTAATAGATAGGACTGGCCAGTTCATGTCAGCCAGGTTCA  150

seq1  TTATCAGTGTGCCTGAGACCTGTTGTATCTCTCTGCTTGGTGGCGAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTGTGCCTGAGACCTGTTGTATCTCTCTGCTTGGTGGCGAGAGT  200

seq1  GCTCTGGCCACAGCCTCCACCACCCACCGCTCACAGTAACTGTGAAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGCCACAGCCTCCACCACCCACCGCTCACAGTAACTGTGAAAGGT  250

seq1  CTCTTTTAAAGGGGGTCTGTGGGTACACCCTCACCCAGAAGTCAGCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTAAAGGGGGTCTGTGGGTACACCCTCACCCAGAAGTCAGCTGGC  300

seq1  AATTGTGTATTTGTATTTCTTGGTAGGAGCAACTAGCTACATTGTAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGTATTTGTATTTCTTGGTAGGAGCAACTAGCTACATTGTAGTAT  350

seq1  TTAAACAGTGTGGGTTCTTTATTCAGAATCAAAAGAGGCAGAAGCAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAGTGTGGGTTCTTTATTCAGAATCAAAAGAGGCAGAAGCAAGGA  400

seq1  GAGACTCTGTTTTGATGACTTCATTGTAAGTTTAAACTATATAATATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTGTTTTGATGACTTCATTGTAAGTTTAAACTATATAATATTAC  450

seq1  TGAGTATGGAAAATCCAGGGAGTGGAAAGAAAATCATCTGGGGAAAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATGGAAAATCCAGGGAGTGGAAAGAAAATCATCTGGGGAAAACAC  500

seq1  ATGTGACCCAGAGCATGCTATACACGTCTGGGATTAAAATATCATGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCCAGAGCATGCTATACACGTCTGGGATTAAAATATCATGTAAC  550

seq1  GAGCTTTAATTTGAATAACACCGGAGTTGCTTCAAAAGCTATCTTTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTAATTTGAATAACACCGGAGTTGCTTCAAAAGCTATCTTTCTAA  600

seq1  AGAAAGTGCCCATTCATTAGCTATTCTGCAAAACAAGATCAGACTTCGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGCCCATTCATTAGCTATTCTGCAAAACAAGATCAGACTTCGTT  650

seq1  GTTGATCATCTTTTCACCAGGGAAACCCTTGCTGGGAAGAACTGCAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCATCTTTTCACCAGGGAAACCCTTGCTGGGAAGAACTGCAGGGT  700

seq1  TCCCGCCAGCCTCTTTTGTCAATCTCTGGGAGGTGGATAATATTCACGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCCAGCCTCTTTTGTCAATCTCTGGGAGGTGGATAATATTCACGGA  750

seq1  AGTTAAAGACTCTTGGCATGAGATTTTTGTCTCCACTTTTTCACCCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGACTCTTGGCATGAGATTTTTGTCTCCACTTTTTCACCCACAA  800

seq1  AGGCAGAATGAATTC  815
      |||||||||||||||
seq2  AGGCAGAATGAATTC  815

seq1: chr19_38420843_38422063
seq2: B6Ng01-071M01.g_65_1278

seq1  GAATTCTGCCCTTGAAGAAGAGATGTGTTGGGAACATTGTCATCATGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCTTGAAGAAGAGATGTGTTGGGAACATTGTCATCATGCAA  50

seq1  AGAAGGGAACGCTAAAAGACATAAAAATATCCATCAAAGGCACCTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGAACGCTAAAAGACATAAAAATATCCATCAAAGGCACCTTTTCT  100

seq1  TATGTCAGGAGATTGGATTTAAGATATGCATATAGTTCCGTGGCCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAGGAGATTGGATTTAAGATATGCATATAGTTCCGTGGCCATTTT  150

seq1  GATGATCTTATTTGTGAGATGTTTCTCACTTCTTTTGCAGGTGATCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCTTATTTGTGAGATGTTTCTCACTTCTTTTGCAGGTGATCTGAT  200

seq1  CAGTGATGCCTAAATTCCAGGATGTCATCCAATGAGACAAATTGGAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGCCTAAATTCCAGGATGTCATCCAATGAGACAAATTGGAGCCA  250

seq1  GAGTTAGATATTAAGAGTAAAGGGCCCTCTCCATCCTCATACCCCCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGATATTAAGAGTAAAGGGCCCTCTCCATCCTCATACCCCCTTTA  300

seq1  TTTTCTGACTATCTAGTCTTCCCAGGGGGCAGTTCACAATAGCCAGAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGACTATCTAGTCTTCCCAGGGGGCAGTTCACAATAGCCAGAGCA  350

seq1  AACAGTCCGGCCTGTACATTTTCTGCTGCCCCTGTATGGAATCTTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCCGGCCTGTACATTTTCTGCTGCCCCTGTATGGAATCTTATTTT  400

seq1  TGGTATTCTGATACTTACATCTGTTGACTCACTGACCCTAGAATGGGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTCTGATACTTACATCTGTTGACTCACTGACCCTAGAATGGGTGT  450

seq1  CCATCTGGTGCTAACCAGTCCCAAAGTCAGGAAAGCTCTCAGGTATTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGGTGCTAACCAGTCCCAAAGTCAGGAAAGCTCTCAGGTATTGTG  500

seq1  CCTGTCTTATGCAGAATAATGACTCCAGAAGCTCCCTGTTGCCACTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTATGCAGAATAATGACTCCAGAAGCTCCCTGTTGCCACTCTTG  550

seq1  AGGTCTTCACACTCAGGATCACTATTCTGAAACCCTAAGCATTCTTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCACACTCAGGATCACTATTCTGAAACCCTAAGCATTCTTAGGT  600

seq1  CAGTTATCAAAGAATCATAGATAGCTCCCCTACACCCTAGGCCAGCTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATCAAAGAATCATAGATAGCTCCCCTACACCCTAGGCCAGCTAAA  650

seq1  GTTACTTAAGCCAGCCAAGGTTAAGCCTTTCCGCCTACAGTAAAAATTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTAAGCCAGCCAAGGTTAAGCCTTTCCGCCTACAGTAAAAATTAC  700

seq1  CCTAGCATACTGCAGTTCTGGGCACCATCCACACATATCCATAGACCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCATACTGCAGTTCTGGGCACCATCCACACATATCCATAGACCCCA  750

seq1  ATGATTGCCAATAAAATGACATGCCATCATCTGTGGTGGTTTG-AATAAA  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGATTGCCAATAAAATGACATGCCATCATCTGTGGTGGTTTGAAATAAA  800

seq1  AATGGTCCCATAGGCCCATAGGGAGTGGCACTATTAGAAGGTATTTCTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCCCATAGGCCCATAGGGAGTGGCACTATTAGAAGGTATTTCTTT  850

seq1  GTT-GGAGTAGGTGTGGCCTTGCTAAAGGAGGTGTGTCATTAGGAAGTGA  898
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGAGTAGGTGTGGCCTTGCTAAAGGAGGTGTGTCATTAGGAAGTGA  900

seq1  GCTTTGAGTTCTCAGAAGCTCAAGGCTAGCCAGTATCTCAGATCAGGACA  948
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAG-TCTCAGAAGCTCAAGGCTAGCCAGTATCTCAGATCAGGACA  949

seq1  A-TCTCATGCAGCCAACAGATCCAAGTGTAGAACTCACTTACCTCTCCAG  997
      | ||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  ATTCTCATGCAGCCAACAGATTCAAGTGTAGAACTCACTTACCTCT-CAG  998

seq1  CGTCATGTCTGCCTGCTTGCTAAGCCGTATGTCACCATCACCATGCTCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATGTCTGCCTGCTTGCTAAGCCGTATGTCACCATCACCATGCTCTC  1048

seq1  TGCCATGATGATAACGGGCTAAACCTCTCAACTGTAAGCCAGCCTCAATT  1097
      || ||||||||||||||||| ||| |||||||||||||||||||||||| 
seq2  TGGCATGATGATAACGGGCT-AACTTCTCAACTGTAAGCCAGCCTCAATA  1097

seq1  AAATATTTTCCTTTGTAGAAGTTGCACTGG-TCATGGTGTCTCTAAACAA  1146
      ||||||||||||||||||||| |||||||| |||||||||||||  ||||
seq2  AAATATTTTCCTTTGTAGAAG-TGCACTGGTTCATGGTGTCTCT-GACAA  1145

seq1  CAATAAAAATCTAGACCAAGACTCTATATTATACCATCTCACCGGAAGTT  1196
      ||||||||    |||||| ||||||||| ||||||||||| || | ||||
seq2  CAATAAAA--GCAGACCAGGACTCTATA-TATACCATCTCTCCCGGAGTT  1192

seq1  AAAAGCATGGACCAGACTA-CCTTGC  1221
        |||||||   ||||||| ||||||
seq2  --AAGCATG--ACAGACTACCCTTGC  1214