BAC Information

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BAC

Clone NameB6Ng01-077G19
Chromosome19 (Build37)
Map Location 27,340,540 - 27,508,627
singlet/doubletdoublet
Overlap geneKcnv2, D19Bwg1357e
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576, Vldlr, LOC100042588
Downstream geneLOC667868, LOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077G19.bB6Ng01-077G19.g
ACCDH893404DH893405
length1,100292
definitionDH893404|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G19, 5' end.DH893405|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,507,527 - 27,508,627)(27,340,540 - 27,340,831)
sequence
gaattcttgatccttattctcttttcttcggcatttgtcaaattaataaa
ttccagtttgtttgtttgtttgtttgtttgtttggtttttcgagacaggg
tttctctgtatagctccggctgtcctggaactcactctgtaaaccaggct
ggcctcgaactcagaaatctgcctgcctctgcctcccgagtgctgagatt
aaaggtgtgcgccaccacgcccggctcaaattccagttttaaaaaaagca
gtacagagacatcccattgaatttgtaatctgactcttgtaaccaaagct
agtgtatcccctgcgggcccataccccactctcagctcttccacggctcc
cagcagtgcctgggtgctcaagagtctgagaaccagatgacctcggttct
gagaaaaataaatcaccttcataattcctatttaaactaactggtttcat
tgtgaaattttaatatacatatgtgtatatatttatactttgttcttata
tgtcccctcagtgttcttcccaccccacctcccctccactttctcctttc
tcccttcaaatatcaattctttgttttcatgtcacaaatatattttgttc
ccctctccctccaaagctcccatcccatcagtctcctgtcatgtcctaca
cacactcagggataggagtagtaaatatatttgtcacaataaaggcagac
aagtatttatgaaatctgtgtgccgagcagtggtatgggtacctgagaac
taagtgtggcttctaacctagcaaaccgcactgtcttatgtatattaccc
ttctcaagctgaatgtctcaaagagaaaacactgagtgagttggaagata
agacaatcttaaggtcagtgtcttagttactgtgaagacacatgctgtga
ggatacaccacgaccaagtgactattagaacaaagcatttaattggggcc
tgcatgcagtttcagacatttagtctttatcatcttggtggggaacacct
tagaagctaggcagcactcacggctagataaattagctgggagctacatt
cttgattcttaggcaagataaagagaaagaagtgggcctagcttgggctt

acctcacatttgggcccatactacccagaagacagactctactatggcct
tactcctccaggctacaggacccctagatgctcaggggagacagttcatg
gcatatgtgctgttcgccagtaatgatctttacaattaaaagttgcagaa
taccccatttttagaaagaccatcagctctcacaggtcttctagattcaa
tcatgcagactcacctgcccacctgggatgactgtcagcagttgctccag
ttcctcttcatgtcagaggagagagagaggggggggggattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27507527_27508627
seq2: B6Ng01-077G19.b_48_1147 (reverse)

seq1  AAGCCCAAGCTAGGCCCAC-TCTCTCTCCTTTTCTTTGCCTGAGAATC-A  48
      ||||||||||||||||||| ||| |||| || || |||||| |||||| |
seq2  AAGCCCAAGCTAGGCCCACTTCTTTCTCTTTATC-TTGCCTAAGAATCAA  49

seq1  GGATGTAGCTCCCAGCT-ACTTATCTAGCCGTGAGTGCTGCCATGCTTCT  97
      | ||||||||||||||| | ||||||||||||||||||||||  ||||||
seq2  GAATGTAGCTCCCAGCTAATTTATCTAGCCGTGAGTGCTGCCTAGCTTCT  99

seq1  AAGGTGTT-CCCACCAAGATGATAAAGGACTAAATGTCTGAAACTGCATG  146
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  AAGGTGTTCCCCACCAAGATGATAAA-GACTAAATGTCTGAAACTGCATG  148

seq1  CAGGCCCCAATTAAATGCTTTTGTTTCTAATAGTCACCTTGGTCGTGGTG  196
      |||||||||||||||||||||   |||||||||||| |||||||||||||
seq2  CAGGCCCCAATTAAATGCTTT--GTTCTAATAGTCA-CTTGGTCGTGGTG  195

seq1  TATCCTCACAGCATGTGTCTTCACAGTAACTAAGACACTGACCTTAAGAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCACAGCATGTGTCTTCACAGTAACTAAGACACTGACCTTAAGAT  245

seq1  TGTCTTATCTTCCAACTCACTCAGTGTTTTCTCTTTGAGACATTCAGCTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATCTTCCAACTCACTCAGTGTTTTCTCTTTGAGACATTCAGCTT  295

seq1  GAGAAGGGTAATATACATAAGACAGTGCGGTTTGCTAGGTTAGAAGCCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGTAATATACATAAGACAGTGCGGTTTGCTAGGTTAGAAGCCAC  345

seq1  ACTTAGTTCTCAGGTACCCATACCACTGCTCGGCACACAGATTTCATAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTTCTCAGGTACCCATACCACTGCTCGGCACACAGATTTCATAAA  395

seq1  TACTTGTCTGCCTTTATTGTGACAAATATATTTACTACTCCTATCCCTGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTCTGCCTTTATTGTGACAAATATATTTACTACTCCTATCCCTGA  445

seq1  GTGTGTGTAGGACATGACAGGAGACTGATGGGATGGGAGCTTTGGAGGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTAGGACATGACAGGAGACTGATGGGATGGGAGCTTTGGAGGGA  495

seq1  GAGGGGAACAAAATATATTTGTGACATGAAAACAAAGAATTGATATTTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAACAAAATATATTTGTGACATGAAAACAAAGAATTGATATTTGA  545

seq1  AGGGAGAAAGGAGAAAGTGGAGGGGAGGTGGGGTGGGAAGAACACTGAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAAGGAGAAAGTGGAGGGGAGGTGGGGTGGGAAGAACACTGAGG  595

seq1  GGACATATAAGAACAAAGTATAAATATATACACATATGTATATTAAAATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATATAAGAACAAAGTATAAATATATACACATATGTATATTAAAATT  645

seq1  TCACAATGAAACCAGTTAGTTTAAATAGGAATTATGAAGGTGATTTATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGAAACCAGTTAGTTTAAATAGGAATTATGAAGGTGATTTATTT  695

seq1  TTCTCAGAACCGAGGTCATCTGGTTCTCAGACTCTTGAGCACCCAGGCAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAACCGAGGTCATCTGGTTCTCAGACTCTTGAGCACCCAGGCAC  745

seq1  TGCTGGGAGCCGTGGAAGAGCTGAGAGTGGGGTATGGGCCCGCAGGGGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAGCCGTGGAAGAGCTGAGAGTGGGGTATGGGCCCGCAGGGGAT  795

seq1  ACACTAGCTTTGGTTACAAGAGTCAGATTACAAATTCAATGGGATGTCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGCTTTGGTTACAAGAGTCAGATTACAAATTCAATGGGATGTCTC  845

seq1  TGTACTGCTTTTTTTAAAACTGGAATTTGAGCCGGGCGTGGTGGCGCACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGCTTTTTTTAAAACTGGAATTTGAGCCGGGCGTGGTGGCGCACA  895

seq1  CCTTTAATCTCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCTCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCG  945

seq1  AGGCCAGCCTGGTTTACAGAGTGAGTTCCAGGACAGCCGGAGCTATACAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTTTACAGAGTGAGTTCCAGGACAGCCGGAGCTATACAG  995

seq1  AGAAACCCTGTCTCGAAAAACCAAACAAACAAACAAACAAACAAACAAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGTCTCGAAAAACCAAACAAACAAACAAACAAACAAACAAAC  1045

seq1  TGGAATTTATTAATTTGACAAATGCCGAAGAAAAGAGAATAAGGATCAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTATTAATTTGACAAATGCCGAAGAAAAGAGAATAAGGATCAAG  1095

seq1  AATTC  1101
      |||||
seq2  AATTC  1100

seq1: chr19_27340540_27340831
seq2: B6Ng01-077G19.g_74_365

seq1  ACCTCACATTTGGGCCCATACTACCCAGAAGACAGACTCTACTATGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACATTTGGGCCCATACTACCCAGAAGACAGACTCTACTATGGCCT  50

seq1  TACTCCTCCAGGCTACAGGACCCCTAGATGCTCAGGGGAGACAGTTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTCCAGGCTACAGGACCCCTAGATGCTCAGGGGAGACAGTTCATG  100

seq1  GCATATGTGCTGTTCGCCAGTAATGATCTTTACAATTAAAAGTTGCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTGCTGTTCGCCAGTAATGATCTTTACAATTAAAAGTTGCAGAA  150

seq1  TACCCCATTTTTAGAAAGACCATCAGCTCTCACAGGTCTTCTAGATTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCATTTTTAGAAAGACCATCAGCTCTCACAGGTCTTCTAGATTCAA  200

seq1  TCATGCAGACTCACCTGCCCACCTGGGATGACTGTCAGCAGTTGCTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAGACTCACCTGCCCACCTGGGATGACTGTCAGCAGTTGCTCCAG  250

seq1  TTCCTCTTCATGTCAGAGGAGAGAGAGAGGGGGGGGGGATTG  292
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTCATGTCAGAGGAGAGAGAGAGGGGGGGGGGATTG  292