BAC Information

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BAC

Clone NameB6Ng01-077L02
Chromosome19 (Build37)
Map Location 19,903,422 - 20,061,052
singlet/doubletdoublet
Overlap genenone
Upstream geneTrpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077L02.bB6Ng01-077L02.g
ACCDH893600DH893601
length1,218405
definitionDH893600|Mus musculus domesticus DNA, BAC clone: B6Ng01-077L02, 5' end.DH893601|Mus musculus domesticus DNA, BAC clone: B6Ng01-077L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,903,422 - 19,904,665)(20,060,642 - 20,061,052)
sequence
gaattcagtgggggtgctttctctctccatgtgcacttttccttgcagta
tgtaatccatgactctttttctcataagaatattggctgtattgcagccc
cacactgatgacttcattccatgttcataaagtaccacacaattataata
tggtttgtttagaagtgatcaatctagaggcatcattcattaaatttata
cttgttatgctgagaggaagaacaagattctctacctgttcaatcccttg
accaaatcttatacagagattttcttctcttttctttttcttcctgttta
gttaaggctaaaacctttggggaaaaaaaagcagaggaaagtgaaaacat
tcagacacatcaggtgttattttttaataaaaggtaaagatattccattt
cttttcctggctccggagtagagtttctcaggtcagaaccagcagcattt
gaatctagattatagcttcacgttggtaggcagtgcctgatataaacatt
atttaaagttcagctatattttgttcaccactcactaaaggttactagca
tctgttccttactgtcttgcaaatattgttaaacgacccttggcaaacaa
agtttcccgcaattgagaacttctattctgaaacaaagaaaaatccagtg
gagtcttgatcatacatagtattgcacaggcttcagggatttttgtttgt
ttgtttgtttgttttttaatctgcttccttagcttttcttttttttcccc
aaggatcttgcatatatttaaatttggaaaaatgacttatatttttcatg
ggtgagtgattcactgagtttatctttttaatttcctgaaaacttagcaa
aatgagaattacaataatgaaatgaaatagacactaagtcaggggcaaga
aatttacctctttagtaaggattctgcctagacccatacaatggcccaaa
gtcaattcctaacatgggaaggttaacaaatctacataaataataaatca
gagtgttaaatagtacaaaatatattaatatgaaaaataaagcatacttt
taaagactaaaaagaatgatgattataaatgggtgaaagtaccataattg
taggacaattttttttctttaagcaagaagagaccgactgaacttaggag
ttattctacttatccactagatcaatgcatgttggattttaatagaatgg
gaagagccttgctcatgt
caggacagtgaagcaagagtgggtggtttgtcgatcagggggagggggta
tgggataggggcttttcggaggggaatccaggaaaggggataccatttga
aatgtaaataaagataatatctaataaaaaagaaaaaaaaagaagaaata
gaatatactgagttaaaaattcagtttctttgtaaggatgttgccttaga
acaatgtcatacaatggcttaggtgtttaattttatagaatttgaaaatt
aaaaatttgtgcctgatatagttgttgcatgctcagatttccaagggact
tcttaactgagttctgaagagaatgattctgagattgcacatttattaga
gactatcttgttaactattttaatagattgaagttttttatgcttcaaca
ttatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19903422_19904665
seq2: B6Ng01-077L02.b_44_1261

seq1  GAATTCAGTGGGGGTGCTTTCTCTCTCCATGTGCACTTTTCCTTGCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGGGGTGCTTTCTCTCTCCATGTGCACTTTTCCTTGCAGTA  50

seq1  TGTAATCCATGACTCTTTTTCTCATAAGAATATTGGCTGTATTGCAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCATGACTCTTTTTCTCATAAGAATATTGGCTGTATTGCAGCCC  100

seq1  CACACTGATGACTTCATTCCATGTTCATAAAGTACCACACAATTATAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGATGACTTCATTCCATGTTCATAAAGTACCACACAATTATAATA  150

seq1  TGGTTTGTTTAGAAGTGATCAATCTAGAGGCATCATTCATTAAATTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGTTTAGAAGTGATCAATCTAGAGGCATCATTCATTAAATTTATA  200

seq1  CTTGTTATGCTGAGAGGAAGAACAAGATTCTCTACCTGTTCAATCCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATGCTGAGAGGAAGAACAAGATTCTCTACCTGTTCAATCCCTTG  250

seq1  ACCAAATCTTATACAGAGATTTTCTTCTCTTTTCTTTTTCTTCCTGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATCTTATACAGAGATTTTCTTCTCTTTTCTTTTTCTTCCTGTTTA  300

seq1  GTTAAGGCTAAAACCTTTGGGGAAAAAAAAGCAGAGGAAAGTGAAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGCTAAAACCTTTGGGGAAAAAAAAGCAGAGGAAAGTGAAAACAT  350

seq1  TCAGACACATCAGGTGTTATTTTTTAATAAAAGGTAAAGATATTCCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACATCAGGTGTTATTTTTTAATAAAAGGTAAAGATATTCCATTT  400

seq1  CTTTTCCTGGCTCCGGAGTAGAGTTTCTCAGGTCAGAACCAGCAGCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTGGCTCCGGAGTAGAGTTTCTCAGGTCAGAACCAGCAGCATTT  450

seq1  GAATCTAGATTATAGCTTCACGTTGGTAGGCAGTGCCTGATATAAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAGATTATAGCTTCACGTTGGTAGGCAGTGCCTGATATAAACATT  500

seq1  ATTTAAAGTTCAGCTATATTTTGTTCACCACTCACTAAAGGTTACTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGTTCAGCTATATTTTGTTCACCACTCACTAAAGGTTACTAGCA  550

seq1  TCTGTTCCTTACTGTCTTGCAAATATTGTTAAACGACCCTTGGCAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTTACTGTCTTGCAAATATTGTTAAACGACCCTTGGCAAACAA  600

seq1  AGTTTCCCGCAATTGAGAACTTCTATTCTGAAACAAAGAAAAATCCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCCGCAATTGAGAACTTCTATTCTGAAACAAAGAAAAATCCAGTG  650

seq1  GAGTCTTGATCATACATAGTATTGCACAGGCTTCAGGGATTTTTGTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTGATCATACATAGTATTGCACAGGCTTCAGGGATTTTTGTTTGT  700

seq1  TTGTTTGTTTGTTTTTTAATCTGCTTCCTTAGCTTTTCTTTTTTTTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTTTTAATCTGCTTCCTTAGCTTTTCTTTTTTTTCCCC  750

seq1  AAGGATCTTGCATATATTTAAATTTGGAAAAATGACTTATATTTTTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCTTGCATATATTTAAATTTGGAAAAATGACTTATATTTTTCATG  800

seq1  GGTGAGTGATTCACTGAGTTTATCTTTTTAATTTCCTGAAAACTTAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTGATTCACTGAGTTTATCTTTTTAATTTCCTGAAAACTTAGCAA  850

seq1  AATGAGAATTACAATAATGAAATGAAATAGACACTAAGTCAGGGGCAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAATTACAATAATGAAATGAAATAGACACTAAGTCAGGGGCAAGA  900

seq1  AATTTACCTCTTTAGTAAGGATTCTGCCTAGACCCATACAATGGCCCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCTCTTTAGTAAGGATTCTGCCTAGACCCATACAATGGCCCAAA  950

seq1  GTCAATTCCTAACATGGGAAGGTTAACAAATCTACAATAAATAATAAATC  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTCAATTCCTAACATGGGAAGGTTAACAAATCTAC-ATAAATAATAAATC  999

seq1  AAGAGTGTTAAATAGTACAAAATATATTAATATGAAAAATAAAAGCAATA  1050
       ||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  -AGAGTGTTAAATAGTACAAAATATATTAATATGAAAAAT-AAAGC-ATA  1046

seq1  CTTTAAAAGACTAAAAAGAATGATGATTATTAAAATGGTGAAAGTAACAT  1100
      |||| |||||||||||||||||||||||| ||||  |||||||||| |||
seq2  CTTTTAAAGACTAAAAAGAATGATGATTA-TAAATGGGTGAAAGTACCAT  1095

seq1  AATTGTAGGACAATATTTTTTCATTATAAGCAAAGAAGAGACCCGACTGA  1150
      |||||||||||||| |||||||  | ||||| ||||||||| ||||||| 
seq2  AATTGTAGGACAATTTTTTTTC--TTTAAGC-AAGAAGAGA-CCGACTG-  1140

seq1  AAAACTTAAAGGAGTTAATTTCTACTTTACTCCAACTAGTATCAAATGCA  1200
        |||||  ||||||||  ||||||||   ||| ||||| ||| ||||||
seq2  --AACTT--AGGAGTTA--TTCTACTT--ATCC-ACTAG-ATC-AATGCA  1179

seq1  TGTGTTGTGATTTTTAATATGAATGGGAAGAGCTGTGCTCATGT  1244
      |||    ||  |||||||| |||||||||||||  |||||||||
seq2  TGT----TGGATTTTAATA-GAATGGGAAGAGCCTTGCTCATGT  1218

seq1: chr19_20060642_20061052
seq2: B6Ng01-077L02.g_66_476 (reverse)

seq1  GATGATGTTGAAGCATCAACAACTTCAATCTATTAAAATAGTTACCAAGA  50
      ||| |||||||||||| || |||||||||||||||||||||||| |||||
seq2  GATAATGTTGAAGCATAAAAAACTTCAATCTATTAAAATAGTTAACAAGA  50

seq1  TAGTCTCTAATAAATGTGCAATCTCAGAATCATTCTCTTCAGAACTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCTAATAAATGTGCAATCTCAGAATCATTCTCTTCAGAACTCAGT  100

seq1  TAAGAAGTCCCTTGGAAATCTGAGCATGCAACAACTATATCAGGCACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTCCCTTGGAAATCTGAGCATGCAACAACTATATCAGGCACAAA  150

seq1  TTTTTAATTTTCAAATTCTATAAAATTAAACACCTAAGCCATTGTATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTTCAAATTCTATAAAATTAAACACCTAAGCCATTGTATGAC  200

seq1  ATTGTTCTAAGGCAACATCCTTACAAAGAAACTGAATTTTTAACTCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCTAAGGCAACATCCTTACAAAGAAACTGAATTTTTAACTCAGTA  250

seq1  TATTCTATTTCTTCTTTTTTTTTCTTTTTTATTAGATATTATCTTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATTTCTTCTTTTTTTTTCTTTTTTATTAGATATTATCTTTATTT  300

seq1  ACATTTCAAATGGTATCCCCTTTCCTGGATTCCCCTCCGAAAAGCCCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAAATGGTATCCCCTTTCCTGGATTCCCCTCCGAAAAGCCCCTA  350

seq1  TCCCATACCCCCTCCCCCTGATCGACAAACCACCCACTCTTGCTTCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATACCCCCTCCCCCTGATCGACAAACCACCCACTCTTGCTTCACTG  400

seq1  TCCTGGAATTC  411
      |||||||||||
seq2  TCCTGGAATTC  411