BAC Information

Click to search

BAC

Clone NameB6Ng01-078F04
Chromosome19 (Build37)
Map Location 58,930,201 - 59,055,510
singlet/doubletdoublet
Overlap geneHspa12a, 6430537H07Rik, 4930506M07Rik
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik
Downstream geneLOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078F04.bB6Ng01-078F04.g
ACCDH894051DH894052
length715356
definitionDH894051|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F04, 5' end.DH894052|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,054,795 - 59,055,510)(58,930,201 - 58,930,562)
sequence
gaattcctgtgactcctatcttaaaagtttgatgtataaaatatagtaaa
tggaaaggaaaacttaaaatagatatctatgaaaatgcacactgtgcata
gctgactttaaaggaaccaatgtttcctctggagacttctgtgggaggct
gcatgtcttttaacatatttcttgtaaatgacacacagtttttaaatacc
tgggatctaaatgaattttcatagagactaaaatctatccaaaattgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaaacagcccagaagcc
aaaaagaaagtgtcatgagtgttttgtagtgagtttatgtgttccctaca
tggctttaccagtgaaggctcttcatgatcagaatctaataaattgtctt
tggtctagctggcacagtagaagaaacaagctggtatagccttgaaggga
ccaccagggtctatgatgtaaacggcatggcagctaaaaaactaaaggaa
attttgctgaatgtgagcccagggtctttcctcagctattgttacctgtg
acaaaagggactctggctaatccggacgtatggaatactttctgtacttt
aagcctgtcttcccacaaataaaagcagagtcagactgatggaccggtac
agagctttggataaaatacagtttttaaaagtacacaaagtcaaagctcc
gttctacctccagtc
cttcagtaagtgataaagtcatttccttcccatccctttatctctgtctg
tttccaacagacccaggcaagcaccgtgtattctcatcacaaactcagga
agcaaagtctagctggtgcctgcattccaggggatgttaattctcccaaa
ccaccatcagtgtggctgaacatctggggaagatagacaccacgggctta
gacaagcctggggaagcagagagggtctgtagcgactgtctctctgggtc
agggaccctgttggctggggagtctcctctactcccctaacacacacaca
ctcactctctctctctctctctctctctctctctctctctctctctctct
ctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_59054795_59055510
seq2: B6Ng01-078F04.b_47_761 (reverse)

seq1  GACTGGAGGTAGAACGGAGCTTTGACTTTGTGTACTTTTTAAAAACTGTA  50
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GACTGGAGGTAGAACGGAGCTTTGACTTTGTGTAC-TTTTAAAAACTGTA  49

seq1  TTTTATCCAAAGCTCTGTACCGGTCCATCAGTCTGACTCTGCTTTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCAAAGCTCTGTACCGGTCCATCAGTCTGACTCTGCTTTTATTT  99

seq1  GTGGGAAGACAGGCTTAAAGTACAGAAAGTATTCCATACGTCCGGATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGACAGGCTTAAAGTACAGAAAGTATTCCATACGTCCGGATTAG  149

seq1  CCAGAGTCCCTTTTGTCACAGGTAACAATAGCTGAGGAAAGACCCTGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTCCCTTTTGTCACAGGTAACAATAGCTGAGGAAAGACCCTGGGC  199

seq1  TCACATTCAGCAAAATTTCCTTTAGTTTTTTAGCTGCCATGCCGTTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTCAGCAAAATTTCCTTTAGTTTTTTAGCTGCCATGCCGTTTACA  249

seq1  TCATAGACCCTGGTGGTCCCTTCAAGGCTATACCAGCTTGTTTCTTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGACCCTGGTGGTCCCTTCAAGGCTATACCAGCTTGTTTCTTCTAC  299

seq1  TGTGCCAGCTAGACCAAAGACAATTTATTAGATTCTGATCATGAAGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAGCTAGACCAAAGACAATTTATTAGATTCTGATCATGAAGAGCC  349

seq1  TTCACTGGTAAAGCCATGTAGGGAACACATAAACTCACTACAAAACACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGGTAAAGCCATGTAGGGAACACATAAACTCACTACAAAACACTC  399

seq1  ATGACACTTTCTTTTTGGCTTCTGGGCTGTTTTTACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACTTTCTTTTTGGCTTCTGGGCTGTTTTTACACACACACACACAC  449

seq1  ACACACACACACACACACACAATTTTGGATAGATTTTAGTCTCTATGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACAATTTTGGATAGATTTTAGTCTCTATGAAA  499

seq1  ATTCATTTAGATCCCAGGTATTTAAAAACTGTGTGTCATTTACAAGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTAGATCCCAGGTATTTAAAAACTGTGTGTCATTTACAAGAAAT  549

seq1  ATGTTAAAAGACATGCAGCCTCCCACAGAAGTCTCCAGAGGAAACATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAAGACATGCAGCCTCCCACAGAAGTCTCCAGAGGAAACATTGG  599

seq1  TTCCTTTAAAGTCAGCTATGCACAGTGTGCATTTTCATAGATATCTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAAAGTCAGCTATGCACAGTGTGCATTTTCATAGATATCTATTT  649

seq1  TAAGTTTTCCTTTCCATTTACTATATTTTATACATCAAACTTTTAAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTCCTTTCCATTTACTATATTTTATACATCAAACTTTTAAGATA  699

seq1  GGAGTCACAGGAATTC  716
      ||||||||||||||||
seq2  GGAGTCACAGGAATTC  715

seq1: chr19_58930201_58930562
seq2: B6Ng01-078F04.g_67_428

seq1  GAATTCCTTCAGTAAGTGATAAAGTCATTTCCTTCCCATCCCTTTATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGTAAGTGATAAAGTCATTTCCTTCCCATCCCTTTATCTC  50

seq1  TGTCTGTTTCCAACAGACCCAGGCAAGCACCGTGTATTCTCATCACAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTCCAACAGACCCAGGCAAGCACCGTGTATTCTCATCACAAAC  100

seq1  TCAGGAAGCAAAGTCTAGCTGGTGCCTGCATTCCAGGGGATGTTAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGCAAAGTCTAGCTGGTGCCTGCATTCCAGGGGATGTTAATTCT  150

seq1  CCCAAACCACCATCAGTGTGGCTGAACATCTGGGGAAGATAGACACCACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACCACCATCAGTGTGGCTGAACATCTGGGGAAGATAGACACCACG  200

seq1  GGCTTAGACAAGCCTGGGGAAGCAGAGAGGGTCTGTAGCGACTGTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGACAAGCCTGGGGAAGCAGAGAGGGTCTGTAGCGACTGTCTCTC  250

seq1  TGGGTCAGGGACCCTGTTGGCTGGGGAGTCTCCTCTACTCCCCTAACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAGGGACCCTGTTGGCTGGGGAGTCTCCTCTACTCCCCTAACACA  300

seq1  CACACACTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  350

seq1  CTCTCTCTCTCT  362
      ||||||||||||
seq2  CTCTCTCTCTCT  362