BAC Information

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BAC

Clone NameB6Ng01-079G17
Chromosome19 (Build37)
Map Location 33,334,595 - 33,489,902
singlet/doubletdoublet
Overlap gene6530404N21Rik, LOC638381
Upstream gene2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
Downstream geneEG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079G17.bB6Ng01-079G17.g
ACCDH894833DH894834
length1,0981,185
definitionDH894833|Mus musculus domesticus DNA, BAC clone: B6Ng01-079G17, 5' end.DH894834|Mus musculus domesticus DNA, BAC clone: B6Ng01-079G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,334,595 - 33,335,693)(33,488,710 - 33,489,902)
sequence
gaattcttattccctacccaccattatttcctgtacttgttgacatgtga
tatatttgctctacaacaacattagccatgagtttcttggatagtcactt
aacatttctaagtttgttttcttttaagaaactgggcataataggcataa
tctctatcaggctatactgtgtggatcaaactgaccatgatatatgattg
tggaatattctggaaaggtgactatataatgcaaacacagagtctagaaa
caaagacttggtcagaatagctagaactcaagtctgtagaaacagtcttt
aagttacccttagcaattcacttatttttggtgccagtagaaaacactag
gggcctacacatgcacggttctgaagataaacctgaagatgtttagacaa
gtattcaaccttgcagtgcctggtctggagaatgaaagttaagatttgat
caaaatggctgactagatacaggaatttcaacccctgcccaataagattt
cttgaaagtatagaaaaaagtaaatgattgtaagatatgcataaagcagc
aagaaagttatatttatgctgtttatgagctgcagattttttttgttaaa
tgtttaatggattttatttttttattgggtatttatttcatttacatttc
taatgctatcccaaaagtctcccacgtgctcccccacccacccactccca
cttcttggccctggggttcccctgtactgaggcatataaagtttgcacga
ccaatgggcctctctttccactgatggccgactaggccatcttctgattc
atatgcagctagagacacgagctctgggggtactggttagttcataatgt
tgttccacctatagggttgagctgcagatttagaatcaccctagaattaa
aagccagatgaagacacaggccagaggaaatcagacagccaaatgcaaac
agcaggcatgctatgatagaatgaattaagtggatgctgcccaggacagc
ctaaacaggagcagaggcacatatgctggattggctgggagctccgttta
gggtcagctactatcttacttcacttattctgacctctcatgctgaga
gaattccagaaattattagagagatctctcaaagaccagagtatttttcc
tcttccagactttttttttctaatggtaagtcataaacagcatcattcac
agtaagtcatggggggggatgcaaattgaagagatgagtaaattaaggaa
aatcttcaggaacaagtttaaatatctgcaaaaagcaaacatattctctg
tggggggaaaaatgtaactatgtagaaaatattaagaagggggaacagca
actgcataatacatgtttatattcatatgtattatttctttcagctctgg
gggcatttgcaacaaatcaagaactggctgaaaagattaaactcaggatt
ttaatagctcccgttcatactgttaaatatgtcaaaggttctgggcgcct
tccagcttatttcactccaacggctttcaaggtttgtgatgaagtcaaaa
aggtttgtgtggtacacttttcaagataagtttgctaaggaagagatcta
ccagtacagtctggtgctcactcacccacatggtcaccctctatggcttc
agagagtctcacctcaaagtcaggcagcctgcactatgtccagttcattt
tctttagcatgcatgtatttttcttttatctatattttaaaatatattgt
ctgctttgtattaatttattttttaattttgagaattttatatgttagaa
ctatatctatgtgattcccatcccttcctattctcttccaattcttctgt
gccccctctcttgcaaattcacgactctctctttcagtatcaccattgca
cacacttatacataataagttcatttcagtgttgtttgtgtgtatgtaca
taattttaaggatgatcactttgaaccagataatcttttgaaatgtttcc
taatattgtttatcttacctagttttcgagttttctatcactatcttcaa
agagaggcagactacttagattattcattttttaatttataagatattat
ttgtctaaaaccatggccctattttatttgtgtcactggctttattacat
ataatatccctatatcattctactaggttatacagatttaaagaaaataa
gtttcagagtctatttttgcactctaggcctacttacagctaatttatga
tacctttaatattgtggctgcttggacagtcttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_33334595_33335693
seq2: B6Ng01-079G17.b_49_1146

seq1  GAATTCTTATTCCCTACCCACCATTATTTCCTGTACTTGTTGACATGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTCCCTACCCACCATTATTTCCTGTACTTGTTGACATGTGA  50

seq1  TATATTTGCTCTACAACAACATTAGCCATGAGTTTCTTGGATAGTCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGCTCTACAACAACATTAGCCATGAGTTTCTTGGATAGTCACTT  100

seq1  AACATTTCTAAGTTTGTTTTCTTTTAAGAAACTGGGCATAATAGGCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCTAAGTTTGTTTTCTTTTAAGAAACTGGGCATAATAGGCATAA  150

seq1  TCTCTATCAGGCTATACTGTGTGGATCAAACTGACCATGATATATGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATCAGGCTATACTGTGTGGATCAAACTGACCATGATATATGATTG  200

seq1  TGGAATATTCTGGAAAGGTGACTATATAATGCAAACACAGAGTCTAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATATTCTGGAAAGGTGACTATATAATGCAAACACAGAGTCTAGAAA  250

seq1  CAAAGACTTGGTCAGAATAGCTAGAACTCAAGTCTGTAGAAACAGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTTGGTCAGAATAGCTAGAACTCAAGTCTGTAGAAACAGTCTTT  300

seq1  AAGTTACCCTTAGCAATTCACTTATTTTTGGTGCCAGTAGAAAACACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACCCTTAGCAATTCACTTATTTTTGGTGCCAGTAGAAAACACTAG  350

seq1  GGGCCTACACATGCACGGTTCTGAAGATAAACCTGAAGATGTTTAGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTACACATGCACGGTTCTGAAGATAAACCTGAAGATGTTTAGACAA  400

seq1  GTATTCAACCTTGCAGTGCCTGGTCTGGAGAATGAAAGTTAAGATTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAACCTTGCAGTGCCTGGTCTGGAGAATGAAAGTTAAGATTTGAT  450

seq1  CAAAATGGCTGACTAGATACAGGAATTTCAACCCCTGCCCAATAAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGCTGACTAGATACAGGAATTTCAACCCCTGCCCAATAAGATTT  500

seq1  CTTGAAAGTATAGAAAAAAGTAAATGATTGTAAGATATGCATAAAGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGTATAGAAAAAAGTAAATGATTGTAAGATATGCATAAAGCAGC  550

seq1  AAGAAAGTTATATTTATGCTGTTTATGAGCTGCAGATTTTTTTTGTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTTATATTTATGCTGTTTATGAGCTGCAGATTTTTTTTGTTAAA  600

seq1  TGTTTAATGGATTTTATTTTTTTATTGGGTATTTATTTCATTTACATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATGGATTTTATTTTTTTATTGGGTATTTATTTCATTTACATTTC  650

seq1  TAATGCTATCCCAAAAGTCTCCCACGTGCTCCCCCACCCACCCACTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTATCCCAAAAGTCTCCCACGTGCTCCCCCACCCACCCACTCCCA  700

seq1  CTTCTTGGCCCTGGGGTTCCCCTGTACTGAGGCATATAAAGTTTGCACGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGCCCTGGGGTTCCCCTGTACTGAGGCATATAAAGTTTGCACGA  750

seq1  CCAATGGGCCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTCTGATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGGCCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTCTGATTC  800

seq1  ATATGCAGCTAGAGACACGAGCTCTGGGGGTACTGGTTAGTTCATAATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAGCTAGAGACACGAGCTCTGGGGGTACTGGTTAGTTCATAATGT  850

seq1  TGTTCCACCTATAGGGTTGAGCTGCAGATTTAGAATCACCCTAGAATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCACCTATAGGGTTGAGCTGCAGATTTAGAATCACCCTAGAATTAA  900

seq1  AAGCCAGATGAAGACACAGGCCAGAGGAAATCAGACAGCCAAATGCAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGATGAAGACACAGGCCAGAGGAAATCAGACAGCCAAATGCAAAC  950

seq1  AGCAGGGCATGCTATGATAGAATGAATTAAGTGGATGCTGCCCAGGACAA  1000
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGCA-GGCATGCTATGATAGAATGAATTAAGTGGATGCTGCCCAGGAC-A  998

seq1  GCCTAAACAGGAGCAGAGGCACATATGCTGGATTGGCTGGGAGCT-CGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCCTAAACAGGAGCAGAGGCACATATGCTGGATTGGCTGGGAGCTCCGTT  1048

seq1  TAGGGTCAGCTACTATCTTACTTCAC-TATTCTGACTCTTCAGTGCTGAG  1098
      |||||||||||||||||||||||||| |||||||||   ||| |||||||
seq2  TAGGGTCAGCTACTATCTTACTTCACTTATTCTGACCTCTCA-TGCTGAG  1097

seq1  A  1099
      |
seq2  A  1098

seq1: chr19_33488710_33489902
seq2: B6Ng01-079G17.g_66_1250 (reverse)

seq1  ATAAGACTGTGTCTAAGCAG-CACAATAATTAAATGTGTATCAATAATTA  49
      |||||||  |||| |||||| |||||| ||||||   ||||||  |||||
seq2  ATAAGAC--TGTCCAAGCAGCCACAAT-ATTAAA--GGTATCATAAATTA  45

seq1  GACTGTAAGTA-GCCTAGAGTGCAAAATTAGACTTCTGAAACCTTATATT  98
      | ||||||||| ||||||||||||||| ||||| ||||||| ||||| ||
seq2  G-CTGTAAGTAGGCCTAGAGTGCAAAAATAGAC-TCTGAAA-CTTATTTT  92

seq1  CTGTAAATCTGTATATACTAGTAGAATGATATAGGGATATTATATGGTAA  148
      || ||||||||||||  |||||||||||||||||||||||||||| ||||
seq2  CTTTAAATCTGTATAACCTAGTAGAATGATATAGGGATATTATAT-GTAA  141

seq1  TAAAGCCAGTGACACAAATAAAATAGGGCCATGGTTTTTAGACAAATTAT  198
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  TAAAGCCAGTGACACAAATAAAATAGGGCCATGG-TTTTAGACAAATAAT  190

seq1  ATCTTTATTAATTTAAAAATGAATAATCTAAGTAGTCTGCCTCTCTTTGA  248
      ||| |||| |||| ||||||||||||||||||||||||||||||||||||
seq2  ATC-TTATAAATTAAAAAATGAATAATCTAAGTAGTCTGCCTCTCTTTGA  239

seq1  AGATAGTGATAGAAAACTCGAAAACTAGGTAAGATAAACAATATTAGGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTGATAGAAAACTCGAAAACTAGGTAAGATAAACAATATTAGGAA  289

seq1  ACATTTCAAAAGATTATCTGGTTCAAAGTGATCATCCTTAAAATTATGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAAAAGATTATCTGGTTCAAAGTGATCATCCTTAAAATTATGTA  339

seq1  CATACACACAAACAACACTG-AATGAACTTATTATGTATAAGTGTGTGCA  397
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATACACACAAACAACACTGAAATGAACTTATTATGTATAAGTGTGTGCA  389

seq1  ATGGTGATACTGAAAGAGAGAGTCGTGAATTTGCAAGAGAGGGGGCACAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGATACTGAAAGAGAGAGTCGTGAATTTGCAAGAGAGGGGGCACAG  439

seq1  AAGAATTGGAAGAGAATAGGAAGGGATGGGAATCACATAGATATAGTTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGGAAGAGAATAGGAAGGGATGGGAATCACATAGATATAGTTCT  489

seq1  AACATATAAAATTCTCAAAATTAAAAAATAAATTAATACAAAGCAGACAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATAAAATTCTCAAAATTAAAAAATAAATTAATACAAAGCAGACAA  539

seq1  TATATTTTAAAATATAGATAAAAGAAAAATACATGCATGCTAAAGAAAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTAAAATATAGATAAAAGAAAAATACATGCATGCTAAAGAAAAT  589

seq1  GAACTGGACATAGTGCAGGCTGCCTGACTTTGAGGTGAGACTCTCTGAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGACATAGTGCAGGCTGCCTGACTTTGAGGTGAGACTCTCTGAAG  639

seq1  CCATAGAGGGTGACCATGTGGGTGAGTGAGCACCAGACTGTACTGGTAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAGGGTGACCATGTGGGTGAGTGAGCACCAGACTGTACTGGTAGA  689

seq1  TCTCTTCCTTAGCAAACTTATCTTGAAAAGTGTACCACACAAACCTTTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTTAGCAAACTTATCTTGAAAAGTGTACCACACAAACCTTTTT  739

seq1  GACTTCATCACAAACCTTGAAAGCCGTTGGAGTGAAATAAGCTGGAAGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATCACAAACCTTGAAAGCCGTTGGAGTGAAATAAGCTGGAAGGC  789

seq1  GCCCAGAACCTTTGACATATTTAACAGTATGAACGGGAGCTATTAAAATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAACCTTTGACATATTTAACAGTATGAACGGGAGCTATTAAAATC  839

seq1  CTGAGTTTAATCTTTTCAGCCAGTTCTTGATTTGTTGCAAATGCCCCCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTAATCTTTTCAGCCAGTTCTTGATTTGTTGCAAATGCCCCCAG  889

seq1  AGCTGAAAGAAATAATACATATGAATATAAACATGTATTATGCAGTTGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAAGAAATAATACATATGAATATAAACATGTATTATGCAGTTGCT  939

seq1  GTTCCCCCTTCTTAATATTTTCTACATAGTTACATTTTTCCCCCCACAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCCTTCTTAATATTTTCTACATAGTTACATTTTTCCCCCCACAGA  989

seq1  GAATATGTTTGCTTTTTGCAGATATTTAAACTTGTTCCTGAAGATTTTCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTTTGCTTTTTGCAGATATTTAAACTTGTTCCTGAAGATTTTCC  1039

seq1  TTAATTTACTCATCTCTTCAATTTGCATCCCCCCCCATGACTTACTGTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTACTCATCTCTTCAATTTGCATCCCCCCCCATGACTTACTGTGA  1089

seq1  ATGATGCTGTTTATGACTTACCATTAGAAAAAAAAAGTCTGGAAGAGGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTGTTTATGACTTACCATTAGAAAAAAAAAGTCTGGAAGAGGAA  1139

seq1  AAATACTCTGGTCTTTGAGAGATCTCTCTAATAATTTCTGGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTCTGGTCTTTGAGAGATCTCTCTAATAATTTCTGGAATTC  1185