BAC Information

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BAC

Clone NameB6Ng01-080G12
Chromosome19 (Build37)
Map Location 49,567,627 - 49,687,461
singlet/doubletdoublet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080G12.bB6Ng01-080G12.g
ACCDH895557DH895558
length1,026977
definitionDH895557|Mus musculus domesticus DNA, BAC clone: B6Ng01-080G12, 5' end.DH895558|Mus musculus domesticus DNA, BAC clone: B6Ng01-080G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,567,627 - 49,568,591)(49,686,841 - 49,687,461)
sequence
gaattcattggttctgcaagttaggattgtgttgaatcatttttttttct
tttggtgttatatcatcataaggaaaatccactcagcaaaaatggttcac
ccaaagacacaccaaactaccccttgatgaggagaaacagctaaccagcc
ctaaaaatagatgataagaaatacaactgtagttgacccatatgggggta
gaaagttcattttgataagatggtctttatcatgttgtattgcatgataa
ctggtttgtagtgtcagttgcatggtccctgtagtgagtgttgagcccta
caactaacatggagctctccatgcatgtagagacagagagaatcacaaag
aagttatcttcttctacatgatagaaaaggtagtatgcctccttggtgaa
tgggaccaaccacctagtatgggaatgcagcttagttcgccaagagtaga
gaacacatgtcacgcttaagacatgcaactgtgccttcaatgtacactca
taagtaatatatccacataagagagcaattccaaccataaaaaggcatag
gatgctatctgtgagtttagcatctgatctggcaaaagacttttttttga
gaaaagaatgagataaaaattggattgccatttgttgcaagtgttaggtg
acaagtaaaagagagtacaaattttgtctatgctaaaatgtccctcctaa
tactcaaaaacttaaaacctatggtaaaaaacaagcagcaaggagaaagg
gagaaaggtggaagtggcagaaaataactcttaggtttcagtttgaatgc
agagtaaggggaaccgaagatccagcatgcagaataggattttgcaagga
gtcagtacagaaatctatgggaatctggaaatacaatgcctttgagctag
ctgggattgggatacaagaggaaaagaaacatagagcctctacaacctgt
gtcttgaagctgtgggtcatggagtggataggatctgtttaatgtcctga
ggtgaaagtaaagggatatactatcc
gaattcacctcagaagtgtgaactcagagagatgcattgatgacttctga
tctcagcccctgaccagatgaggccaatggaagtacatcagaagcgtggg
actagtaggtcttgcttcaatttgcctcattgattctagtgaaccagagg
aggatgcttcaggtcatgaaggtggctatgctcgtctctccattgacttt
acagattattaaggagtttcggtttttatataaattcagaacttttttta
ggtttagggccacatacacatgtacttcctatggtgtatttgtggcagtc
aggacagacaacttctgggaaccagtttatcctttttgccatgtaatcag
aacatgtaccatggttaggcaaaaacttgtgggacataaatgagacgtaa
gaaaatatagataaaaccataactgaatctagtaacaggaaatcaatgca
gaaaaatcaatacagaaatatcaatgaaagtaagatcatgttctttgaac
atatcaaaacattgaaaattatctacacaggttaaaaacaaaccaaaatg
atagaaaatggaagaacaaaaatggatgagataagtggaaaatgataata
taaatgattgagatagcatcaatattgatgtcatgtatattaaataataa
taaattatcattatagacaagtatatatcccagaattggataatctacat
tacccacgaaaggtatagtgtatgaaatcatgtataagaaaaaatataat
cttagcaactctacatacgtatttttaataaattactaatttctattttc
ctaaaacacaaaccaggctctgaaaatcttactgttgaattctactaaat
attttaggaagaattgatgtactccacttaaaaagtacagagaggtacat
tttaattctacttctaagatcaacatatattaacataaacccccagaaaa
aagtattgaaagaaaagacattacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49567627_49568591
seq2: B6Ng01-080G12.b_48_1010

seq1  GAATTCATTGGTTCTGCAAGTTAGGATTGTGTTGAATCATTTTTTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGTTCTGCAAGTTAGGATTGTGTTGAATCATTTTTTTTTCT  50

seq1  TTTGGTGTTATATCATCATAAGGAAAATCCACTCAGCAAAAATGGTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTTATATCATCATAAGGAAAATCCACTCAGCAAAAATGGTTCAC  100

seq1  CCAAAGACACACCAAACTACCCCTTGATGAGGAGAAACAGCTAACCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGACACACCAAACTACCCCTTGATGAGGAGAAACAGCTAACCAGCC  150

seq1  CTAAAAATAGATGATAAGAAATACAACTGTAGTTGACCCATATGGGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATAGATGATAAGAAATACAACTGTAGTTGACCCATATGGGGGTA  200

seq1  GAAAGTTCATTTTGATAAGATGGTCTTTATCATGTTGTATTGCATGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCATTTTGATAAGATGGTCTTTATCATGTTGTATTGCATGATAA  250

seq1  CTGGTTTGTAGTGTCAGTTGCATGGTCCCTGTAGTGAGTGTTGAGCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGTAGTGTCAGTTGCATGGTCCCTGTAGTGAGTGTTGAGCCCTA  300

seq1  CAACTAACATGGAGCTCTCCATGCATGTAGAGACAGAGAGAATCACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAACATGGAGCTCTCCATGCATGTAGAGACAGAGAGAATCACAAAG  350

seq1  AAGTTATCTTCTTCTACATGATAGAAAAGGTAGTATGCCTCCTTGGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATCTTCTTCTACATGATAGAAAAGGTAGTATGCCTCCTTGGTGAA  400

seq1  TGGGACCAACCACCTAGTATGGGAATGCAGCTTAGTTCGCCAAGAGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCAACCACCTAGTATGGGAATGCAGCTTAGTTCGCCAAGAGTAGA  450

seq1  GAACACATGTCACGCTTAAGACATGCAACTGTGCCTTCAATGTACACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACATGTCACGCTTAAGACATGCAACTGTGCCTTCAATGTACACTCA  500

seq1  TAAGTAATATATCCACATAAGAGAGCAATTCCAACCATAAAAAGGCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAATATATCCACATAAGAGAGCAATTCCAACCATAAAAAGGCATAG  550

seq1  GATGCTATCTGTGAGTTTAGCATCTGATCTGGCAAAAGACTTTTTTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTATCTGTGAGTTTAGCATCTGATCTGGCAAAAGACTTTTTTTTGA  600

seq1  GAAAAGAATGAGATAAAAATTGGATTGCCATTTGTTGCAAGTGTTAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAATGAGATAAAAATTGGATTGCCATTTGTTGCAAGTGTTAGGTG  650

seq1  ACAAGTAAAAGAGAGTACAAATTTTGTCTATGCTAAAATGTCCCTCCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAAAAGAGAGTACAAATTTTGTCTATGCTAAAATGTCCCTCCTAA  700

seq1  TACTCAAAAACTTAAAACCTATGGTAAAAAACAAGCAGCAAGGAGAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAAAACTTAAAACCTATGGTAAAAAACAAGCAGCAAGGAGAAAGG  750

seq1  GAGAAAGGTGGAAGTGGCAGAAAATAACTCTTAGGTTTCAGTTTGAATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGTGGAAGTGGCAGAAAATAACTCTTAGGTTTCAGTTTGAATGC  800

seq1  AGAGTAAGGGGAACCGAAGATCCAGCATGCAGAATAGGATTTTGCAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGGGGAACCGAAGATCCAGCATGCAGAATAGGATTTTGCAAGGA  850

seq1  GTCAGTACAGAAATCTATGGGAATCTGGAAATACAATGCCTTTGAGCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTACAGAAATCTATGGGAATCTGGAAATACAATGCCTTTGAGCTAG  900

seq1  CTGGGATTGGGATACAAGAGGAAAAGAAACAATAGAGCCTCTAACAACCT  950
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  CTGGGATTGGGATACAAGAGGAAAAGAAAC-ATAGAGCCTCT-ACAACCT  948

seq1  GTGTCTTGAAGCTGT  965
      |||||||||||||||
seq2  GTGTCTTGAAGCTGT  963

seq1: chr19_49686841_49687461
seq2: B6Ng01-080G12.g_69_689 (reverse)

seq1  TGATGCTATCTCAATCATTTATATTATCATTTTCCACTTATCTCATCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTATCTCAATCATTTATATTATCATTTTCCACTTATCTCATCCAT  50

seq1  TTTTGTTCTTCCATTTTCTATCATTTTGGTTTGTTTTTAACCTGTGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCTTCCATTTTCTATCATTTTGGTTTGTTTTTAACCTGTGTAGA  100

seq1  TAATTTTCAATGTTTTGATATGTTCAAAGAACATGATCTTACTTTCATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCAATGTTTTGATATGTTCAAAGAACATGATCTTACTTTCATTG  150

seq1  ATATTTCTGTATTGATTTTTCTGCATTGATTTCCTGTTACTAGATTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTGTATTGATTTTTCTGCATTGATTTCCTGTTACTAGATTCAGT  200

seq1  TATGGTTTTATCTATATTTTCTTACGTCTCATTTATGTCCCACAAGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTTATCTATATTTTCTTACGTCTCATTTATGTCCCACAAGTTTT  250

seq1  TGCCTAACCATGGTACATGTTCTGATTACATGGCAAAAAGGATAAACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAACCATGGTACATGTTCTGATTACATGGCAAAAAGGATAAACTGG  300

seq1  TTCCCAGAAGTTGTCTGTCCTGACTGCCACAAATACACCATAGGAAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAAGTTGTCTGTCCTGACTGCCACAAATACACCATAGGAAGTAC  350

seq1  ATGTGTATGTGGCCCTAAACCTAAAAAAAGTTCTGAATTTATATAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATGTGGCCCTAAACCTAAAAAAAGTTCTGAATTTATATAAAAAC  400

seq1  CGAAACTCCTTAATAATCTGTAAAGTCAATGGAGAGACGAGCATAGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACTCCTTAATAATCTGTAAAGTCAATGGAGAGACGAGCATAGCCAC  450

seq1  CTTCATGACCTGAAGCATCCTCCTCTGGTTCACTAGAATCAATGAGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGACCTGAAGCATCCTCCTCTGGTTCACTAGAATCAATGAGGCAA  500

seq1  ATTGAAGCAAGACCTACTAGTCCCACGCTTCTGATGTACTTCCATTGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGCAAGACCTACTAGTCCCACGCTTCTGATGTACTTCCATTGGCC  550

seq1  TCATCTGGTCAGGGGCTGAGATCAGAAGTCATCAATGCATCTCTCTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGTCAGGGGCTGAGATCAGAAGTCATCAATGCATCTCTCTGAGT  600

seq1  TCACACTTCTGAGGTGAATTC  621
      |||||||||||||||||||||
seq2  TCACACTTCTGAGGTGAATTC  621