BAC Information

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BAC

Clone NameB6Ng01-080L10
Chromosome19 (Build37)
Map Location 19,799,240 - 19,800,366
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080L10.bB6Ng01-080L10.g
ACCDH895775DH895776
length1,1801,098
definitionDH895775|Mus musculus domesticus DNA, BAC clone: B6Ng01-080L10, 5' end.DH895776|Mus musculus domesticus DNA, BAC clone: B6Ng01-080L10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattacaagggatctgtgcagagctaaagaaagaattctcaactg
aggaatatcaaatggccaagaagcacctaaagaaatgttcaatatcctta
gtcatcagggaaatgcaaatcaatacaaccctaaggttccaactcacact
ggtcagaatggctaagatcaaatctcaggtgacagcagttcctcggaaag
tgggacatagtactacctgaggacccagctataccactcctgagcatata
cctaaaagacgttccaacatataacaagaacgcatgctccactatgttta
taacagacttatttatgatagccagaagttggaaagaacccagatgtcct
tcaacagaggaatggatgcagaaaatgtggtacatttacacaatggagta
ctactcagctattaaaaacaatgactccatgaaattcgcaggcacatgaa
tggaactagaaaatatcctgagtgaggtgaaccagtcacataagaacaca
aatgagtgaacataagtgaggtaaaccagttacaaaagaacacttcttac
cactgataagtggatattagtcccaaagccatgaataatataatttacag
accacatgaagctcaagaagaaggaaggcgaaagtgtgggtacttcagtc
cttcttagaaggggtaacaaaatactcacaagagcaaatatggagataaa
gtgtggaccagagcctgaaggaaaggccatccagacactgcccaacctgg
ggatctatcccatatacagtcaccaaagccatacactattgtggatgcca
agaagtgcttgttgactggagcctgatacagctgtctcctgagaggctct
gccagactctgacaaatgcaaaggaggatgcttgcagtcaaccattggtc
tgagcatggggtctccagtggaggagttagagaaaggactgaatgagctt
aaggggtttgcaaccccataggagaacaactatatcaccaatcagatacc
ccagaacactcaggactaaaccactaccaagaatatacatggagggatcc
atgctcagctgcatgtgtagcagaggatttcctgtcgcatcatgaaagga
aaggccctgtcctctgaaagcttgatgcccagtgtaggaaaggtaggact
ggagcaagaagtggtatatgtggggtggta
gaattctccctgaaactatgagccaaaatgcattttttcttagctcattc
tgtcagataatttagttacagtgacatgaaattaactgatacagatggct
gtaagccaagccaaggtgagatctgaaggaatgtgcttcacccagatctc
tatagaataagtgacattaagattctgacaaataaaaaaggaaggaaata
tacaaaacccagacaagttttcatgatgctggatgttcccatcattatat
tagggtccacacacccaaggcattagagcacttcagagattcttcctaaa
aggatgaaggtcagattgattcaagtagctcaaagggcacctttttaata
aaagccataaagtatggaacattcaataatacaatcacccaagaattgga
tgtcaaaatttggccaaaataattatcaggaatataagcagagaatcagt
tccattctcttaatcatactctgagagaagtaccttagccatttctcaat
ctttagtcatttacttcctacgtacctccatccaaaaggcttgactttgt
tagagtttagcctccatcaaatgaaaggaaaaaagcaaacttatgcatgg
tatgataaaaatttaagaaaactctgttacttgggattttagaattgctt
ctttcagctccaacaatatgtgtaaaagttccaacctcagcttttattct
taacaggaaactgtgatccatgtagagttgtcaataaaagcctcagcgac
gtctaaagcaaaactgagcggaagtaatggaatcaaaacccaatgatata
ccatgtaaagaaatcctggagcctagagcctggagctcttcagaggaagg
ctgagttatgtttctatttgctgtgataaaacatcatgataagacaactg
atagaagggtatatttgaagttatggttgcagagattaacaacagttcat
accaatcactacacaaagcttgcagccagctctatggttgtagcagaact
gcgagattaagttagagtcccagagaacaggacaactcataatgatcagt
ctttagccctgacccatcccagtgactactctcagaaagactgatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19799240_19800366
seq2: B6Ng01-080L10.g_70_1167

seq1  GAATTCTCCCTGAAACTATGAGCCAAAATGCATTTTTTCTTAGCTCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTGAAACTATGAGCCAAAATGCATTTTTTCTTAGCTCATTC  50

seq1  TGTCAGATAATTTAGTTACAGTGACATGAAATTAACTGATACAGATGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATAATTTAGTTACAGTGACATGAAATTAACTGATACAGATGGCT  100

seq1  GTAAGCCAAGCCAAGGTGAGATCTGAAGGAATGTGCTTCACCCAGATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCAAGCCAAGGTGAGATCTGAAGGAATGTGCTTCACCCAGATCTC  150

seq1  TATAGAATAAGTGACATTAAGATTCTGACAAATAAAAAAGGAAGGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATAAGTGACATTAAGATTCTGACAAATAAAAAAGGAAGGAAATA  200

seq1  TACAAAACCCAGACAAGTTTTCATGATGCTGGATGTTCCCATCATTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACCCAGACAAGTTTTCATGATGCTGGATGTTCCCATCATTATAT  250

seq1  TAGGGTCCACACACCCAAGGCATTAGAGCACTTCAGAGATTCTTCCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCCACACACCCAAGGCATTAGAGCACTTCAGAGATTCTTCCTAAA  300

seq1  AGGATGAAGGTCAGATTGATTCAAGTAGCTCAAAGGGCACCTTTTTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAAGGTCAGATTGATTCAAGTAGCTCAAAGGGCACCTTTTTAATA  350

seq1  AAAGCCATAAAGTATGGAACATTCAATAATACAATCACCCAAGAATTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATAAAGTATGGAACATTCAATAATACAATCACCCAAGAATTGGA  400

seq1  TGTCAAAATTTGGCCAAAATAATTATCAGGAATATAAGCAGAGAATCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAATTTGGCCAAAATAATTATCAGGAATATAAGCAGAGAATCAGT  450

seq1  TCCATTCTCTTAATCATACTCTGAGAGAAGTACCTTAGCCATTTCTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTCTTAATCATACTCTGAGAGAAGTACCTTAGCCATTTCTCAAT  500

seq1  CTTTAGTCATTTACTTCCTACGTACCTCCATCCAAAAGGCTTGACTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTCATTTACTTCCTACGTACCTCCATCCAAAAGGCTTGACTTTGT  550

seq1  TAGAGTTTAGCCTCCATCAAATGAAAGGAAAAAAGCAAACTTATGCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTAGCCTCCATCAAATGAAAGGAAAAAAGCAAACTTATGCATGG  600

seq1  TATGATAAAAATTTAAGAAAACTCTGTTACTTGGGATTTTAGAATTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAAAAATTTAAGAAAACTCTGTTACTTGGGATTTTAGAATTGCTT  650

seq1  CTTTCAGCTCCAACAATATGTGTAAAAGTTCCAACCTCAGCTTTTATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGCTCCAACAATATGTGTAAAAGTTCCAACCTCAGCTTTTATTCT  700

seq1  TAACAGGAAACTGTGATCCATGTAGAGTTGTCAATAAAAGCCTCAGCGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGAAACTGTGATCCATGTAGAGTTGTCAATAAAAGCCTCAGCGAC  750

seq1  GTCTAAAGCAAAACTGAGCGGAAGTAATGGAATCAAAACCCAATGATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAGCAAAACTGAGCGGAAGTAATGGAATCAAAACCCAATGATATA  800

seq1  CCATGTAAAGAAATCCTGGAGCCTAGAGCCTGGAGCTCTTCAGAGGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAAAGAAATCCTGGAGCCTAGAGCCTGGAGCTCTTCAGAGGAAGG  850

seq1  CTGAGTTATGTTTCTA-TTGCTGTGATAAAACATCATGATAAGACAACTG  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGAGTTATGTTTCTATTTGCTGTGATAAAACATCATGATAAGACAACTG  900

seq1  ATAGAAGGGTATATTTGAAGGTTATGGTTGCAGAGATTAACAACAGTTCA  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATAGAAGGGTATATTTGAA-GTTATGGTTGCAGAGATTAACAACAGTTCA  949

seq1  TACCAATCACTACCACAAAGCTTGGCAGCCAGCTCTAAGGGTTGGTAGCA  999
      |||||||||||| |||||||||| ||||||||||||| ||  | ||||||
seq2  TACCAATCACTA-CACAAAGCTT-GCAGCCAGCTCTATGG--TTGTAGCA  995

seq1  GGAACTGCCGAGGAATAAAGTTTAAGAGTCCCAAGAAGGAAACAGGGAAC  1049
       |||||| ||||  || |||||  ||||||||    ||  ||||||  ||
seq2  -GAACTG-CGAG--ATTAAGTT--AGAGTCCC----AGAGAACAGG--AC  1033

seq1  AAACTCATAATGGATCAAGTCTTTAAGCCCTTGAAACCCATCCCCAGTGA  1099
       |||||||||| |||| ||||||| ||||||    |||||| ||||||||
seq2  -AACTCATAAT-GATC-AGTCTTT-AGCCCT---GACCCAT-CCCAGTGA  1075

seq1  CATACTTCCTCCAGAAAGACTGAATCTC  1127
      | ||||  || ||||||||||| |||||
seq2  C-TACT--CT-CAGAAAGACTG-ATCTC  1098