BAC Information

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BAC

Clone NameB6Ng01-081C12
Chromosome19 (Build37)Y (Build37)
Map Location 47,262,100 - 47,262,662573,321 - 573,350
singlet/doubletsingletsinglet
Overlap geneNeurl
Upstream geneGbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389
Downstream geneEG329070, Sh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081C12.bB6Ng01-081C12.g
ACCDH896090DH896091
length543500
definitionDH896090|Mus musculus domesticus DNA, BAC clone: B6Ng01-081C12, 5' end.DH896091|Mus musculus domesticus DNA, BAC clone: B6Ng01-081C12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(47,262,100 - 47,262,662)(573,321 - 573,350)
sequence
atctagactgaaggtacctaaggatttgagattcattttaaaactttttt
aatgtgtgcatctaagtatatactgtctgtgaaggcatggcgactatctg
aacacttacagctagagttacaggcactcatgggctgctgggaaccaaag
ttaggaggggccagaagttgggaattctggactggccaagccatcttaga
tgtcctttgactaaccaagggagggagctctggataggtagggccttgta
ctttctttcctccctctggggctctgccttgtctcttttctacaactgaa
agggggggaaaaagccaggccaaaacaggatagtattacagtagtgtggt
ggtttgtctaaaatgaccccataggctcatatatttgaatggttagctac
catggtgtggtactatggagaagggttagaagtttggcctggttggagta
ggtgtgtgtctaaagaagattgtactggaggtgggtttgaggctttaaac
ccatccacaacagtctattctctcaacttccccctcccccccc
gaattccccattttcctaagccccttaccccataaaaaaccctagctttc
gagcctcgtggccaacatcctttatctcctgtgtgggatgcatgtcggtc
cggatctccgtaattaaatgtcctcatgtaattacaacaagatgggtcct
cgtatttctttgggtgctctcacactcccaagactagagtgggggtccct
gaaagggggtcttacaggaacaaaacacccatggaaggagttacagagac
aaagtttggagatgagacaaaaggatggaccatctagagactgccatatc
cagggatccatcccataaacagcctccaaacgctgacaccattgcataca
ctagcaagattttgctgaaaggaccctgatatagctgtctcttgtgagac
tatgccggggcctaacaaacacagaagtggatgctcacagtcagctattg
gatggatcacagggctcccaatggaggagctagagaaagtacccaaggag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_47262100_47262662
seq2: B6Ng01-081C12.b_35_583 (reverse)

seq1  GGGGGGGGATGGGGGGAGGTTGAGAGAGACTGAGACTGGTCGTGGGATGG  50
      |||||||||  |||||| |||||||||     ||||| || || ||||||
seq2  GGGGGGGGA--GGGGGAAGTTGAGAGA---ATAGACT-GTTGT-GGATGG  43

seq1  GCTTTTAAAGCCTCAAAACCCACCTCCAGTGACACTCTTCCTTCAGACAC  100
      |  ||||||||||| ||||||||||||||| ||| |||| ||| ||||||
seq2  G--TTTAAAGCCTC-AAACCCACCTCCAGT-ACAATCTT-CTTTAGACAC  88

seq1  ACACCTACTCCAACCAGGCCACACTTCCTAACCCTTCTCCAATAGTACCA  150
      ||||||||||||||||||||| |||| ||||||||||||| |||||||||
seq2  ACACCTACTCCAACCAGGCCAAACTT-CTAACCCTTCTCC-ATAGTACCA  136

seq1  CACCATGGTAGCTAAGCATTCAAATATATGAGCCTATGGGGTCATTCTTA  200
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  CACCATGGTAGCTAACCATTCAAATATATGAGCCTATGGGGTCATT-TTA  185

seq1  GACAAACCACCACACTACTGTAACTACTATCCTGTTTTGGCCTGGCTTTT  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GACAAACCACCACACTACTGTAA-TACTATCCTGTTTTGGCCTGGCTTTT  234

seq1  --CCCCCCCTTCAGTTGTAGAAAAGAGACAAGGCAGAGCCCCAGAGGGAG  298
        |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCTTTCAGTTGTAGAAAAGAGACAAGGCAGAGCCCCAGAGGGAG  284

seq1  GAAAGAAAGTACAAGGCCCTACCTATCCAGAGCTCCCTCCCTTGGTTAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGTACAAGGCCCTACCTATCCAGAGCTCCCTCCCTTGGTTAGT  334

seq1  CAAAGGACATCTAAGATGGCTTGGCCAGTCCAGAATTCCCAACTTCTGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGACATCTAAGATGGCTTGGCCAGTCCAGAATTCCCAACTTCTGGC  384

seq1  CCCTCCTAACTTTGGTTCCCAGCAGCCCATGAGTGCCTGTAACTCTAGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTAACTTTGGTTCCCAGCAGCCCATGAGTGCCTGTAACTCTAGCT  434

seq1  GTAAGTGTTCAGATAGTCGCCATGCCTTCACAGACAGTATATACTTAGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGTTCAGATAGTCGCCATGCCTTCACAGACAGTATATACTTAGAT  484

seq1  GCACACATTAAAAAAGTTTTAAAATGAATCTCTATGCCTTAGGTACCTTC  548
      |||||||||||||||||||||||||||||||| |  ||||||||||||||
seq2  GCACACATTAAAAAAGTTTTAAAATGAATCTCAAATCCTTAGGTACCTTC  534

seq1  AGTCTAGATGAATTC  563
      |||||||||||||||
seq2  AGTCTAGATGAATTC  549

seq1: chrY_573321_573350
seq2: B6Ng01-081C12.g_502_531

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAG  30
      ||||||||||||||||||||||||||||||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAG  30