BAC Information

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BAC

Clone NameB6Ng01-081M05
Chromosome19 (Build37)
Map Location 38,779,792 - 38,846,072
singlet/doubletdoublet
Overlap genePlce1
Upstream geneLOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, EG667587
Downstream geneNoc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081M05.bB6Ng01-081M05.g
ACCDH896514DH896515
length387904
definitionDH896514|Mus musculus domesticus DNA, BAC clone: B6Ng01-081M05, 5' end.DH896515|Mus musculus domesticus DNA, BAC clone: B6Ng01-081M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,845,680 - 38,846,072)(38,779,792 - 38,780,710)
sequence
tagtaattccacaggggctaaggcaaactgttcagactatgcacatactt
gctactataagaattattcaagatgagaagttttcaggggttctgttggt
actgttatcttctcaagagactcaacactactttttctcagcactgaggg
ctcacttgtttatttgtatggggagacaatatggtgttgctttcactagt
ggctatgggaagtttccctgattttataaaatcgtaatagtgattccaca
ctaaagattctggactgattgactaaaagcaatcaaggaatagaaaacca
ccccaaactttaagcagtggcttttgtttgattatatatatatatatata
tatatatatatatatatatatatatatatatatatat
gaattcagagaaggagctcacggtcaacagcatctttcaggtcatccgga
gctgcagccgaagtttggagatggaggaggaagacagtgccagtgaaggg
agcggctctaggaaaaactccctgaaggacaaagcccgatggcagtaagt
cccagcattggcgtgtctgtgggtgggtgcagtgctggtgtctgtgggtg
ggtgccgcgccagcgagtatgttgggtgggtgcctgtcttctttgctcct
tgactagtgttcttcctactcagttcagttacacagaaaaaaaactgacc
aaaatgtgccattttcttgcttaaccaaggctgcttcaaactttactaat
tctgagctcgaatttacctttcctatgttgctcccttgttcttaaattac
tgcatacatttaactttttccataagttgtagcctttttaaaagaaaatg
atttctttacttttttttaaactgatagtaaaattttagaactgtgcgta
ttaatggggtatatattatccccgtaaaaatagctaaggctgtcctgcca
tttcgaaaacatcaataactgagtttcaagattggaatcccaatctttta
ttcactttatagtttttgtaatagtggcttctattaaattctgggtaggg
tgctggggaggatattaaaatattttaaaatataccagggtcctaggtat
taagtgatgctcaaaatcagtacttttatcagtccacctgagatctgcag
ctctaacatctcatttcgagtaacactgcaaatggggatattttagttag
gcctacacacgtacccaaaaaaaaaaaaaaaaaaagatgagaaaaaggag
gaggaaggagagggagaaggagacaaagacacgaccacgtgacaacaaca
cctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38845680_38846072
seq2: B6Ng01-081M05.b_45_437 (reverse)

seq1  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50

seq1  ATATAATCAAACAAAAGCCACTGCTTAAAGTTTGGGGTGGTTTTCTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCAAACAAAAGCCACTGCTTAAAGTTTGGGGTGGTTTTCTATTC  100

seq1  CTTGATTGCTTTTAGTCAATCAGTCCAGAATCTTTAGTGTGGAATCACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGCTTTTAGTCAATCAGTCCAGAATCTTTAGTGTGGAATCACTA  150

seq1  TTACGATTTTATAAAATCAGGGAAACTTCCCATAGCCACTAGTGAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGATTTTATAAAATCAGGGAAACTTCCCATAGCCACTAGTGAAAGCA  200

seq1  ACACCATATTGTCTCCCCATACAAATAAACAAGTGAGCCCTCAGTGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATATTGTCTCCCCATACAAATAAACAAGTGAGCCCTCAGTGCTGA  250

seq1  GAAAAAGTAGTGTTGAGTCTCTTGAGAAGATAACAGTACCAACAGAACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTAGTGTTGAGTCTCTTGAGAAGATAACAGTACCAACAGAACCC  300

seq1  CTGAAAACTTCTCATCTTGAATAATTCTTATAGTAGCAAGTATGTGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACTTCTCATCTTGAATAATTCTTATAGTAGCAAGTATGTGCATA  350

seq1  GTCTGAACAGTTTGCCTTAGCCCCTGTGGAATTACTAGAATTC  393
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAACAGTTTGCCTTAGCCCCTGTGGAATTACTAGAATTC  393

seq1: chr19_38779792_38780710
seq2: B6Ng01-081M05.g_69_972

seq1  GAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGA  50

seq1  GCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGG  100

seq1  AGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCAGTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCAGTAAGT  150

seq1  CCCAGCATTGGCGTGTCTGTGGGTGGGTGCAGTGCTGGTGTCTGTGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATTGGCGTGTCTGTGGGTGGGTGCAGTGCTGGTGTCTGTGGGTG  200

seq1  GGTGCCGCGCCAGCGAGTATGTTGGGTGGGTGCCTGTCTTCTTTGCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCGCGCCAGCGAGTATGTTGGGTGGGTGCCTGTCTTCTTTGCTCCT  250

seq1  TGACTAGTGTTCTTCCTACTCAGTTCAGTTACACAGAAAAAAAACTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGTGTTCTTCCTACTCAGTTCAGTTACACAGAAAAAAAACTGACC  300

seq1  AAAATGTGCCATTTTCTTGCTTAACCAAGGCTGCTTCAAACTTTACTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGCCATTTTCTTGCTTAACCAAGGCTGCTTCAAACTTTACTAAT  350

seq1  TCTGAGCTCGAATTTACCTTTCCTATGTTGCTCCCTTGTTCTTAAATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTCGAATTTACCTTTCCTATGTTGCTCCCTTGTTCTTAAATTAC  400

seq1  TGCATACATTTAACTTTTTCCATAAGTTGTAGCCTTTTTAAAAGAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACATTTAACTTTTTCCATAAGTTGTAGCCTTTTTAAAAGAAAATG  450

seq1  ATTTCTTTACTTTTTTTTAAACTGATAGTAAAATTTTAGAACTGTGCGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTACTTTTTTTTAAACTGATAGTAAAATTTTAGAACTGTGCGTA  500

seq1  TTAATGGGGTATATATTATCCCCGTAAAAATAGCTAAGGCTGTCCTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGGGTATATATTATCCCCGTAAAAATAGCTAAGGCTGTCCTGCCA  550

seq1  TTTCGAAAACATCAATAACTGAGTTTCAAGATTGGAATCCCAATCTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAAAACATCAATAACTGAGTTTCAAGATTGGAATCCCAATCTTTTA  600

seq1  TTCACTTTATAGTTTTTGTAATAGTGGCTTCTATTAAATTCTGGGTAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTATAGTTTTTGTAATAGTGGCTTCTATTAAATTCTGGGTAGGG  650

seq1  TGCTGGGGAGGATATTAAAATATTTTAAAATATACCAGGGTCCTAGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGAGGATATTAAAATATTTTAAAATATACCAGGGTCCTAGGTAT  700

seq1  TAAGTGATGCTCAAAATCAGTACTTTTATCAGTCCACCTGAGATCTGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGATGCTCAAAATCAGTACTTTTATCAGTCCACCTGAGATCTGCAG  750

seq1  CTCTAACATCTCATTTCGAGTAACACTGCAAATGGGGATATTTTAGTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACATCTCATTTCGAGTAACACTGCAAATGGGGATATTTTAGTTAG  800

seq1  GCCTACACACGTACCCAAAAAAAAAAAAAAAAAAAAAAAAAGATGAGAAA  850
      ||||||||||||||||      ||||||||||||||||||||||||||||
seq2  GCCTACACACGTACCC------AAAAAAAAAAAAAAAAAAAGATGAGAAA  844

seq1  AAGGAGGAAGGGAAGGAGAGGGAGAAGGAGACGAAGAAGACAACGACGAC  900
      ||||||||  |||||||||||||||||||||| ||||     ||||| ||
seq2  AAGGAGGA--GGAAGGAGAGGGAGAAGGAGACAAAGA----CACGACCAC  888

seq1  AGTGACAACCAACAACCTT  919
       ||||||| |||| |||||
seq2  -GTGACAA-CAAC-ACCTT  904