BAC Information

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BAC

Clone NameB6Ng01-086C20
Chromosome19 (Build37)
Map Location 17,259,780 - 17,260,948
singlet/doubletsinglet
Overlap geneA230083H22Rik
Upstream geneGnaq, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
Downstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086C20.bB6Ng01-086C20.g
ACCDH899645DH899646
length1,1511,229
definitionDH899645|Mus musculus domesticus DNA, BAC clone: B6Ng01-086C20, 5' end.DH899646|Mus musculus domesticus DNA, BAC clone: B6Ng01-086C20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgctcatttttaaagtgtaagggtaacactgaggagaggtggc
attttcaagaacttctttgtggcttacagttttaagtgttactttttttt
ttcaactaataaactatgtttatagggctcttgggttaacatcctagttg
catgtcaaatatctagttccttccctcctcttcccccaccctcactactt
ccctcaccatcttcacctgcatctgtagcaactgacagcctcccttgaaa
acatgccactctctgctagagtacaaagtttacattagggctcactcctg
atgctcaacattccgtgggtttagacacagtgcaaagtgacctgtaattt
atccttccttcccctgtgttgcgtgacagcattcctctggagacatgggc
aaacatctactcaccccagacagggaacaatagagcaaagaaaggatgtt
atcaaagttcaactcagtaaaacagtgagttttattggggttactaacaa
gagtaaggttgaggggtgacttagaggagcagaaatgactcaacccacag
tgatcaccaaaagcctacttagcacactgaacagcctgcagagtgcttgc
tccataggtagaccatgtctgtttcaggcagatgggttgctctggacttg
ttttgggcagcagggctggtttctgcctcttccaggcagctcaacttgtc
tgagagtgttctaggcagcctagcttatttgtctttcgatggtccttgga
gcttatatgtgctttgagagggaagggctgtgtgtaaagtggtcagtttc
aggaacttcctgaagcctttggattatttacttccaaagttaaggggctt
ccctgctggctgaaaggcttcacctcccttagaacattttctgaattagc
ttcccttagactgagggttcttatggcagaatttgtcacacagaaccatc
taacccttggtgcgaggattttgtctctccagcttgccctttacagaatg
tcatgtagaatcacacagtaagtggccttcagatagatatcttctctatg
catttatgatccttcatatctggagatccatttctttcatccctcagaat
atccagttgtgcatgtgacacttggtttctgtcaccaattgaacaggatc
t
gaattctaaccctctgccagcgtgagccccaaattaagcattttctttta
taaattgccttgatcaccatgtcttttcatagcaatagagaaataactga
aacacttatcaactctaatttacactgtccatttacccctgggtgtagga
ccatccattagaatgtggttaaccaaccaggagtcacatgcttaaagaag
acaactcccctttcttcagaggccatcaactgtctatgttcctcaccgag
gggtagagacatctgaactgcttcccacaccatgctatggcattaattag
gttgaccttatgtaagttttgtgcgggggaaaccacagcggctgtgagtt
cacaagaacagagatgtccagaagacatcttgttttgctccagtctttcc
tgactctggttcttatgacctttccatgcctgtcagctgggcatgtgtgc
tctcaatggtgtcccctttcctgttgagcccccaaaggcattctgctctc
tcctttctggagtctgtgctacagtgcttctatcattcatgttttatagt
gttatcagttttgtgtgtcacctgcccatcatactcaaactaacttctgt
taaggctcttccagaaaggggatgtctaggtagaaatacactgggatctt
tcagaaaagacacataataaagacgcatcctgtgactacaggatattgca
ggcatcccttagggcttcccctgaaacaccaccaggaaaggacgagagtc
tctaattctcctccacaaagcaacatcaagaccaagttagaggggctaag
gaatgatgagaagtaaagcagaacaaaatggttaaaatatgagagagcgg
aggggtgggtgatggcgatcgatccagacaacagatttcgctattccttt
caaaacgttgctctgattttcacttccttcatggtgaacctttttccctc
ctgtactggagttttcaactccagttgaagagagcaatccagtctgtcca
aggtgaaggatcccagatactcatgaaaacacaaattctggtgttactgt
caacaggaagagctaaattaaaatcgaaaactgctgggttctctgtcata
gggtgttcatgttccctggagagttacatccaagttgaaagaggaaactc
ctttctgtaatgcaaggtgatcctggaacggaccagcttagcttacgggg
acaagtggcaagaggcgtcttttgcattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17259780_17260948
seq2: B6Ng01-086C20.b_41_1191

seq1  GAATTCATGCTCATTTTTAAAGTGTAAGGGTAACACTGAGGAGAGGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTCATTTTTAAAGTGTAAGGGTAACACTGAGGAGAGGTGGC  50

seq1  ATTTTCAAGAACTTCTTTGTGGCTTACAGTTTTAAGTGTTACTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAGAACTTCTTTGTGGCTTACAGTTTTAAGTGTTACTTTTTTTT  100

seq1  TTCAACTAATAAACTATGTTTATAGGGCTCTTGGGTTAACATCCTAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTAATAAACTATGTTTATAGGGCTCTTGGGTTAACATCCTAGTTG  150

seq1  CATGTCAAATATCTAGTTCCTTCCCTCCTCTTCCCCCACCCTCACTACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAAATATCTAGTTCCTTCCCTCCTCTTCCCCCACCCTCACTACTT  200

seq1  CCCTCACCATCTTCACCTGCATCTGTAGCAACTGACAGCCTCCCTTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACCATCTTCACCTGCATCTGTAGCAACTGACAGCCTCCCTTGAAA  250

seq1  ACATGCCACTCTCTGCTAGAGTACAAAGTTTACATTAGGGCTCACTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCACTCTCTGCTAGAGTACAAAGTTTACATTAGGGCTCACTCCTG  300

seq1  ATGCTCAACATTCCGTGGGTTTAGACACAGTGCAAAGTGACCTGTAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAACATTCCGTGGGTTTAGACACAGTGCAAAGTGACCTGTAATTT  350

seq1  ATCCTTCCTTCCCCTGTGTTGCGTGACAGCATTCCTCTGGAGACATGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCTTCCCCTGTGTTGCGTGACAGCATTCCTCTGGAGACATGGGC  400

seq1  AAACATCTACTCACCCCAGACAGGGAACAATAGAGCAAAGAAAGGATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTACTCACCCCAGACAGGGAACAATAGAGCAAAGAAAGGATGTT  450

seq1  ATCAAAGTTCAACTCAGTAAAACAGTGAGTTTTATTGGGGTTACTAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGTTCAACTCAGTAAAACAGTGAGTTTTATTGGGGTTACTAACAA  500

seq1  GAGTAAGGTTGAGGGGTGACTTAGAGGAGCAGAAATGACTCAACCCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGGTTGAGGGGTGACTTAGAGGAGCAGAAATGACTCAACCCACAG  550

seq1  TGATCACCAAAAGCCTACTTAGCACACTGAACAGCCTGCAGAGTGCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACCAAAAGCCTACTTAGCACACTGAACAGCCTGCAGAGTGCTTGC  600

seq1  TCCATAGGTAGACCATGTCTGTTTCAGGCAGATGGGTTGCTCTGGACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGGTAGACCATGTCTGTTTCAGGCAGATGGGTTGCTCTGGACTTG  650

seq1  TTTTGGGCAGCAGGGCTGGTTTCTGCCTCTTCCAGGCAGCTCAACTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGCAGCAGGGCTGGTTTCTGCCTCTTCCAGGCAGCTCAACTTGTC  700

seq1  TGAGAGTGTTCTAGGCAGCCTAGCTTATTTGTCTTTCGATGGTCCTTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTGTTCTAGGCAGCCTAGCTTATTTGTCTTTCGATGGTCCTTGGA  750

seq1  GCTTATATGTGCTTTGAGAGGGAAGGGCTGTGTGTAAAGTGGTCAGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATATGTGCTTTGAGAGGGAAGGGCTGTGTGTAAAGTGGTCAGTTTC  800

seq1  AGGAACTTCCTGAAGCCTTTGGATTATTTACTTCCAAAGTTAAGGGGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTTCCTGAAGCCTTTGGATTATTTACTTCCAAAGTTAAGGGGCTT  850

seq1  CCCTGCTGGCTGAAAGGCTTCACCTCCCTTAGAACATTTTCTGAATTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGGCTGAAAGGCTTCACCTCCCTTAGAACATTTTCTGAATTAGC  900

seq1  TTCCCTTAGACTGAGGGTTTCTTATGGCAGAAATTTGTCACACAGAACCA  950
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  TTCCCTTAGACTGAGGG-TTCTTATGGCAG-AATTTGTCACACAGAACCA  948

seq1  TCTAACCCTTGGGTGCGGAGGATTTTTGTCTCTCCAGCTTTGCCCTTTTA  1000
      |||||||||| ||||| ||||| ||||||||||||||| |||||| ||||
seq2  TCTAACCCTT-GGTGC-GAGGA-TTTTGTCTCTCCAGC-TTGCCC-TTTA  993

seq1  CAGAATGTCATGTAGAATCACACAGTAAGTGGCCTTTCAGATAGATATTC  1050
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  CAGAATGTCATGTAGAATCACACAGTAAGTGGCC-TTCAGATAGATA-TC  1041

seq1  TTCTCTTATGCATTTATGATTCCTTCATATCTGGAGGATCCATTTCTTTT  1100
      ||||| ||||||||||||| ||||||||||||||| |||||||||| |||
seq2  TTCTC-TATGCATTTATGA-TCCTTCATATCTGGA-GATCCATTTC-TTT  1087

seq1  CATCCCTCAGGAATATTCCAGTGTGTGCATGTGACACTTTGTTTTTCTGT  1150
      ||||||||| ||||| |||||| |||||||||||||||| |  |||||||
seq2  CATCCCTCA-GAATA-TCCAGT-TGTGCATGTGACACTTGG--TTTCTGT  1132

seq1  CACCAATTG-ACAGGTATCT  1169
      ||||||||| ||||| ||||
seq2  CACCAATTGAACAGG-ATCT  1151