BAC Information

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BAC

Clone NameB6Ng01-086G11
Chromosome18 (Build37)19 (Build37)
Map Location 52,174,891 - 52,175,41941,479,766 - 41,480,057
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrr16, EG240289
Downstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086G11.bB6Ng01-086G11.g
ACCDH899813DH899814
length1,005987
definitionDH899813|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G11, 5' end.DH899814|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,174,891 - 52,175,419)(41,479,766 - 41,480,057)
sequence
gaattccatttgaatagattagaaaggatgtgatgggatgatgattgaaa
ctcttgcgtgcctaatcctggctttgtaccttagcaaccattgtcccttg
ataaagtcaacctttctatgaactacatccttgtatataagataaagatc
aaatttccatatttctgcttttcttgaatatgctaaagtaagatgcaaac
tactgatttcccatcttaaaatctacttccacttcaactacacattcatc
cttccattagcaagtaagcaatgatcattaacctatatgtcaaatgctag
aaagtaaagagttttaactgtcttctaaactaccatgatcagatgtggaa
agcaatcttgcaaccaatacagtgttattattactataatggtggaaaag
gctcaagtgttacaggaaaacagatatagtgctctttaatggtaaacaaa
agtcacataataatgtaaaggttttggtgacttcaaaaatgaatctctct
ctctctctctctctctctctctctctctcatatcaaccaaccagaaccca
cagagctcccagggactaagccaccaaccaaggagtacacatggctccag
ctgcatatgtagcagaggatggccctgtcagatattgcgcccacctcggc
cggcaaggaagacacaacatggtcagattcttctcaacagcctttattgc
aggaacaccttgatgctgctacggggacccgggaacccagggaggtctgc
ttatatactctccagcacagggaaaggcttcatggctccctgggattggt
cagtcttccggcacctaatttgcatgcacccgcttgaaaggggttggcac
cagacttggacttacacctgcgctgatgttgtttatgacaacggcacacc
tggcgcccggcgccatcttaaagttggcttcctacagtcagacatcaatg
ggaggatatgtccttgatcctatgaaggctagataaatgcctcagtgtat
gggaa
gaattcacctacatttcatgtgagaagagctggtcacatgcaggtaagtc
aaaaagccagaaagaggtgattaacatattctgtgtatagaggatgttga
aatgtttatttttgtgagttagatggggcaacttggtaatttatgggaca
aatgagatcaaacttactgtgcttcaaaagaaaggttgctcaagttgggc
ctggatgtttggggctctcagaatcggaacgaccaaccaaagagcataca
caggctggacttaagccttcttgcacatatgtatataggagctgtgccac
ttggtcttcatgtgagtcctgaacaactggagtgaaatctatccccaaag
ctgttatatgtgggatatgttcttctagctgggtgccttgtcttgcctca
gtgggagaggaagtgcccagccttgtagagagttgaagtgccaggatggg
gagatctggggggggggagtcatgtgttaatagctggtgttagttgttat
agttctctctggctggagcctgttcctcctgtgattctcttagcctctgt
cagcagtcctgggagtccagctctcttctgagtctcagtggtcagagtac
tttcttcaggcaagctctcctcttgcagggaaggtgcacagaggtctggc
attcagatctgccctcctggctgaagatgaagtcctgaaaacagtgcctg
ttccagaagatgtgttgcctctgtagtctgtgcgctcacctgcacagact
ggtctctgatggacccaggacacaagatggctccctcacctgctccagag
gtcagagccttcctatgtggttacctcttctctggcggggaaggtgcccg
gatgtctgtagcctgaaaaggggtctgttccaggaactgtgttgcttctg
cctgtccagagctgtgtcacttctgcagtcactcactcaccctctacagt
ctgcaagctgacctgcacagactggtctcaaagggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_52174891_52175419
seq2: B6Ng01-086G11.b_43_571

seq1  GAATTCCATTTGAATAGATTAGAAAGGATGTGATGGGATGATGATTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTGAATAGATTAGAAAGGATGTGATGGGATGATGATTGAAA  50

seq1  CTCTTGCATGCCTAATCCTGGCTTTGTACCTTAACAACCATTGTCACTTG  100
      ||||||| ||||||||||||||||||||||||| ||||||||||| ||||
seq2  CTCTTGCGTGCCTAATCCTGGCTTTGTACCTTAGCAACCATTGTCCCTTG  100

seq1  AGAAAGTCAACCTTTCTATGAACTACTTCCTTGTATATAAGATAAAGATC  150
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATAAAGTCAACCTTTCTATGAACTACATCCTTGTATATAAGATAAAGATC  150

seq1  AAATTTCCATATTTCTGCTTTTCTTGAATATGCTAAAGTAAGATGCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCATATTTCTGCTTTTCTTGAATATGCTAAAGTAAGATGCAAAC  200

seq1  TAGTGATTTCCCATCTTAGAATCTACTTCCACTTCAACTACACATTCATC  250
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TACTGATTTCCCATCTTAAAATCTACTTCCACTTCAACTACACATTCATC  250

seq1  CTTCCATTAGCAAGTAAGCAATGATCAGTAACCTATATGTCAGATGCTAG  300
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  CTTCCATTAGCAAGTAAGCAATGATCATTAACCTATATGTCAAATGCTAG  300

seq1  TAAGTAAAGTGTTTTAACTGTCTTCTAAACTACCATGATCAGATGTGGAA  350
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAGAGTTTTAACTGTCTTCTAAACTACCATGATCAGATGTGGAA  350

seq1  AGCAATCTTGCAACCAATACAGTGTTATTATTACTATAATGGTGGAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTTGCAACCAATACAGTGTTATTATTACTATAATGGTGGAAAAG  400

seq1  GCTCAAGTGTTACAGGAAAACAGATATAGTGCTCTTTAATGGTAAGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTCAAGTGTTACAGGAAAACAGATATAGTGCTCTTTAATGGTAAACAAA  450

seq1  AGTCACATAATAATGTAAAGGTTTTGGTGACTTCAAAAATGAATCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATAATAATGTAAAGGTTTTGGTGACTTCAAAAATGAATCTCTCT  500

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTC  529
      |||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTC  529

seq1: chr19_41479766_41480057
seq2: B6Ng01-086G11.g_549_1052 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  GTCCCTTTGAGACCAGTCTGTGCAGGTCAGCTTGCAGACTGTAGAGGGTG  50

seq1  --------------------------------------------------  0
                                                        
seq2  AGTGAGTGACTGCAGAAGTGACACAGCTCTGGACAGGCAGAAGCAACACA  100

seq1  --------------------------------------------------  0
                                                        
seq2  GTTCCTGGAACAGACCCCTTTTCAGGCTACAGACATCCGGGCACCTTCCC  150

seq1  --------------------------------------------------  0
                                                        
seq2  CGCCAGAGAAGAGGTAACCACATAGGAAGGCTCTGACCTCTGGAGCAGGT  200

seq1  -----------------------GTCCCTCTGAGACCAGTCTGTGCAGGT  27
                             |||| || |||||||||||||||||||
seq2  GAGGGAGCCATCTTGTGTCCTGGGTCCATCAGAGACCAGTCTGTGCAGGT  250

seq1  CAGCTCTCGGACTGCAGAGAGTGAGTGAGCAGACTAGTCCCTGAGGGATC  77
       ||| | | |||| |||||         ||| ||   |  ||   ||| |
seq2  GAGCGCACAGACTACAGAG---------GCA-ACACAT--CTTCTGGAAC  288

seq1  CGGCAC-----CCAAGA-TGGCTCCCCAACCTGCTCTGGCAGAGCCCTTC  121
       |||||      || || |   ||  || || |    |||||| |   | 
seq2  AGGCACTGTTTTCAGGACTTCATCTTCAGCCAG-GAGGGCAGATC---TG  334

seq1  CAGGCAGATACCTCTGTGCACCTTCCCTGCAAGAGGAGAGTTTGCCTGCA  171
       | ||  | ||||||||||||||||||||||||||||||| ||||||| |
seq2  AATGC-CAGACCTCTGTGCACCTTCCCTGCAAGAGGAGAGCTTGCCTGAA  383

seq1  GAGAGTACTCTGACCACTGAGACTCAGGAAAGAGTTGGACTCCCAGGACT  221
      || |||||||||||||||||||||||| | |||| |||||||||||||||
seq2  GAAAGTACTCTGACCACTGAGACTCAGAAGAGAGCTGGACTCCCAGGACT  433

seq1  GCTGACAGAGGCTAACAGAATCACAGGAGGAACAAGCTCCAGCCAGAGAC  271
      ||||||||||||||| |||||||||||||||||| |||||||||||||| 
seq2  GCTGACAGAGGCTAAGAGAATCACAGGAGGAACAGGCTCCAGCCAGAGAG  483

seq1  AACTATAACAACTAACGCCAG  292
      |||||||||||||||| ||||
seq2  AACTATAACAACTAACACCAG  504