BAC Information

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BAC

Clone NameB6Ng01-088F07
Chromosome19 (Build37)
Map Location 22,294,210 - 22,418,265
singlet/doubletdoublet
Overlap geneTrpm3
Upstream geneLOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneEG433230, Klf9, Smc5, Mamdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088F07.bB6Ng01-088F07.g
ACCDH901212DH901213
length7221,113
definitionDH901212|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F07, 5' end.DH901213|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,294,210 - 22,294,931)(22,417,134 - 22,418,265)
sequence
gaattccaaatatcacacaatcacaaaaactatctgcagctgcgacagca
caaggcaaatcatagacagctgctgtggacaatctgaaagagccctgtat
cccacacctgagatcaaaaggaaaaacacactcccataatatttctgtga
ttttgaaaggaagcaaaattctaaaattctcactacagcatcatcttctc
agtgctgagatttttgttttgtttgcatctggaagatgctcttttcttgg
agtcatctctcagctctggcttctacaatctttctatctactcttttcca
tagattcctgagtcttgagggaagtggtttgataaaacccatttggtgct
gagtgatccagagtttcttactctctacacattgtccaattgtggttctc
tgtgttattcccaatctactgcaagaagaaacttctctaatgaagcttga
gtaatgctgtgatcgatggacacagcaattatgtcattaggagccatttt
attgctatgctcgcatagcagaatagtagttgtaggtttcatccttaaga
ccgtgatcgaagtgatttcaggttcttatccactttagccatgtcagctg
atgcagtgaaccttaaatccagtcattgcttattcccatgacctctgtac
cactattgcaccagtccccttgcaggcaggtagctgttgtaggaggtctc
agagtttgtagttgcttgatac
gaattccaggtctagagactggttctactaaatggcaagctgacttagga
aataccgaggctcccagagccaaacaacctggataaactcagtaggacta
tgaaaacctgtccattgccaccttaaataaagagaaatacctgttaattt
aggcttggcttttgtcaacagaatgaagtaccaacaaaagatcgtgaatt
ttgaaacaggaatgctatgtaagttggttgtctgaaaactgatacatgca
gtattcaattcagaacctgtcaaggaaaagaagcccattgctaccattgc
tagtatcactagcatccctgatatgaacagtgtgtcgcttttataatggt
taattctgctcctgctactatgaactctatgatctgaactgtattgtatt
ttacttcccaatataaatgccaaagacattgtaaagatcactctaaaaca
taaggcattggaatagcaggtaattctatccctgcagatgccttggagtt
cctattatggacggtgttatgctaagtgcttagggtgtggaagagggaag
ggagtctagttaatagagaaaatgaaagtgacctgctagtgattaaagta
gtgtggtcactgcaagagagtaatttagtcatgtagagcaagcttggttg
cctctgagttttctgttcggggaaggtggatggcactaaagaggactatg
gaagatgaacaggactccatagctcagggtggtggacagaacagcccagg
ttattggaacagaatgagaagaggtgtagccaccaccgcaatgtcaggta
tccatgatcaaagacagttctgggagaagaacttttgaagggttcttttg
gctagactgggaaatgtggatgatgaatgaagataagcacagattattct
catcactagtccggtaccacatggatatccccgagggaacagaaacataa
atcccagcaaatgtagatgacatagaaccaggaagacttgcttgcgtgtt
ggcttcatgcagtgagacattggagagtgagaagaggactagaagagatt
gaaggtacagagccagcctttgctgataagacctcctcagggaatggcca
tgaggattaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_22294210_22294931
seq2: B6Ng01-088F07.b_45_766

seq1  GAATTCCAAATATCACACAATCACAAAAACTATCTGCAGCTGCGACAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATATCACACAATCACAAAAACTATCTGCAGCTGCGACAGCA  50

seq1  CAAGGCAAATCATAGACAGCTGCTGTGGACAATCTGAAAGAGCCCTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAAATCATAGACAGCTGCTGTGGACAATCTGAAAGAGCCCTGTAT  100

seq1  CCCACACCTGAGATCAAAAGGAAAAACACACTCCCATAATATTTCTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCTGAGATCAAAAGGAAAAACACACTCCCATAATATTTCTGTGA  150

seq1  TTTTGAAAGGAAGCAAAATTCTAAAATTCTCACTACAGCATCATCTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAGGAAGCAAAATTCTAAAATTCTCACTACAGCATCATCTTCTC  200

seq1  AGTGCTGAGATTTTTGTTTTGTTTGCATCTGGAAGATGCTCTTTTCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGAGATTTTTGTTTTGTTTGCATCTGGAAGATGCTCTTTTCTTGG  250

seq1  AGTCATCTCTCAGCTCTGGCTTCTACAATCTTTCTATCTACTCTTTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTCTCAGCTCTGGCTTCTACAATCTTTCTATCTACTCTTTTCCA  300

seq1  TAGATTCCTGAGTCTTGAGGGAAGTGGTTTGATAAAACCCATTTGGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCCTGAGTCTTGAGGGAAGTGGTTTGATAAAACCCATTTGGTGCT  350

seq1  GAGTGATCCAGAGTTTCTTACTCTCTACACATTGTCCAATTGTGGTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATCCAGAGTTTCTTACTCTCTACACATTGTCCAATTGTGGTTCTC  400

seq1  TGTGTTATTCCCAATCTACTGCAAGAAGAAACTTCTCTAATGAAGCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTATTCCCAATCTACTGCAAGAAGAAACTTCTCTAATGAAGCTTGA  450

seq1  GTAATGCTGTGATCGATGGACACAGCAATTATGTCATTAGGAGCCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCTGTGATCGATGGACACAGCAATTATGTCATTAGGAGCCATTTT  500

seq1  ATTGCTATGCTCGCATAGCAGAATAGTAGTTGTAGGTTTCATCCTTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTATGCTCGCATAGCAGAATAGTAGTTGTAGGTTTCATCCTTAAGA  550

seq1  CCGTGATCGAAGTGATTTCAGGTTCTTATCCACTTTAGCCATGTCAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGATCGAAGTGATTTCAGGTTCTTATCCACTTTAGCCATGTCAGCTG  600

seq1  ATGCAGTGAACCTTAAATCCAGTCATTGCTTATTCCCATGACCTCTGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGAACCTTAAATCCAGTCATTGCTTATTCCCATGACCTCTGTAC  650

seq1  CACTATTGCACCAGTCCCCTTGCAGGCAGGTAGCTGTTGTAGGAGGTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTGCACCAGTCCCCTTGCAGGCAGGTAGCTGTTGTAGGAGGTCTC  700

seq1  AGAGTTTGTAGTTGCTTGATAC  722
      ||||||||||||||||||||||
seq2  AGAGTTTGTAGTTGCTTGATAC  722

seq1: chr19_22417134_22418265
seq2: B6Ng01-088F07.g_69_1181 (reverse)

seq1  GCTTTTAAATCCTTCATGGCCATTCCCTGAGGAGGTTCCTTATCAGGCAA  50
      |||||  ||||| |||||||||||||||||||||||  ||||||| ||||
seq2  GCTTT--AATCC-TCATGGCCATTCCCTGAGGAGGT--CTTATCA-GCAA  44

seq1  AGGCTGGCTCTTGTACCTTCAATCTCTTTCTAGTTCCTCTTTCTCACTCT  100
      |||||||||| ||||||||||||||| |||||| ||||| ||||||||| 
seq2  AGGCTGGCTC-TGTACCTTCAATCTC-TTCTAG-TCCTC-TTCTCACTC-  89

seq1  TCCAATGTCCTCACTTGCATGAAGCCAACACGCAAGCAAGTTCTTCCTGG  150
      |||||||| ||||| ||||||||||||||||||||||||| |||||||||
seq2  TCCAATGT-CTCAC-TGCATGAAGCCAACACGCAAGCAAG-TCTTCCTGG  136

seq1  TTCTTATGTCATCTTAACATTTGCTGGGATTTATGTTTCTGTTCCCTCGG  200
      ||| ||||||||||  ||||||||||||||||||||||||||||||||||
seq2  TTC-TATGTCATCT--ACATTTGCTGGGATTTATGTTTCTGTTCCCTCGG  183

seq1  GGATATCCATGTGGTACCGGACTAGTGATGAAGAATAATCTGTGCTTATC  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGATATCCATGTGGTACCGGACTAGTGATG-AGAATAATCTGTGCTTATC  232

seq1  TTCATTCATCATCCACATTTCCCAGTCTAGCCAAAAGAACCCTTCAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCATCATCCACATTTCCCAGTCTAGCCAAAAGAACCCTTCAAAAG  282

seq1  TTCTTCTCCCAGAACTGTCTTTGATCATGGATACCCTGACATTGCGGTGG  350
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTCTTCTCCCAGAACTGTCTTTGATCATGGATA-CCTGACATTGCGGTGG  331

seq1  TGGCTACACCTCTTCTCATTCTGTTCCAATAACCTGGGCTGTTCTGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACACCTCTTCTCATTCTGTTCCAATAACCTGGGCTGTTCTGTCCA  381

seq1  CCACCCTGAGCTATGGAGTCCTGTTCATCTTCCATAGTCCTCTTTAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTGAGCTATGGAGTCCTGTTCATCTTCCATAGTCCTCTTTAGTGC  431

seq1  CATCCACCTTCCCCGAACAGAAAACTCAGAGGCAACCAAGCTTGCTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACCTTCCCCGAACAGAAAACTCAGAGGCAACCAAGCTTGCTCTAC  481

seq1  ATGACTAAATTACTCTCTTGCAGTGACCACACTACTTTAATCACTAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAAATTACTCTCTTGCAGTGACCACACTACTTTAATCACTAGCAG  531

seq1  GTCACTTTCATTTTCTCTATTAACTAGACTCCCTTCCCTCTTCCACACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTCATTTTCTCTATTAACTAGACTCCCTTCCCTCTTCCACACCC  581

seq1  TAAGCACTTAGCATAACACCGTCCATAATAGGAACTCCAAGGCATCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACTTAGCATAACACCGTCCATAATAGGAACTCCAAGGCATCTGCA  631

seq1  GGGATAGAATTACCTGCTATTCCAATGCCTTATGTTTTAGAGTGATCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGAATTACCTGCTATTCCAATGCCTTATGTTTTAGAGTGATCTTT  681

seq1  ACAATGTCTTTGGCATTTATATTGGGAAGTAAAATACAATACAGTTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCTTTGGCATTTATATTGGGAAGTAAAATACAATACAGTTCAGA  731

seq1  TCATAGAGTTCATAGTAGCAGGAGCAGAATTAACCATTATAAAAGCGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAGTTCATAGTAGCAGGAGCAGAATTAACCATTATAAAAGCGACA  781

seq1  CACTGTTCATATCAGGGATGCTAGTGATACTAGCAATGGTAGCAATGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTCATATCAGGGATGCTAGTGATACTAGCAATGGTAGCAATGGGC  831

seq1  TTCTTTTCCTTGACAGGTTCTGAATTGAATACTGCATGTATCAGTTTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCCTTGACAGGTTCTGAATTGAATACTGCATGTATCAGTTTTCA  881

seq1  GACAACCAACTTACATAGCATTCCTGTTTCAAAATTCACGATCTTTTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCAACTTACATAGCATTCCTGTTTCAAAATTCACGATCTTTTGTT  931

seq1  GGTACTTCATTCTGTTGACAAAAGCCAAGCCTAAATTAACAGGTATTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTCATTCTGTTGACAAAAGCCAAGCCTAAATTAACAGGTATTTCT  981

seq1  CTTTATTTAAGGTGGCAATGGACAGGTTTTCATAGTCCTACTGAGTTTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTAAGGTGGCAATGGACAGGTTTTCATAGTCCTACTGAGTTTAT  1031

seq1  CCAGGTTGTTTGGCTCTGGGAGCCTCGGTATTTCCTAAGTCAGCTTGCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGTTTGGCTCTGGGAGCCTCGGTATTTCCTAAGTCAGCTTGCCA  1081

seq1  TTTAGTAGAACCAGTCTCTAGACCTGGAATTC  1132
      ||||||||||||||||||||||||||||||||
seq2  TTTAGTAGAACCAGTCTCTAGACCTGGAATTC  1113