BAC Information

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BAC

Clone NameB6Ng01-089N16
Chromosome19 (Build37)
Map Location 20,621,087 - 20,717,575
singlet/doubletdoublet
Overlap geneE030003E18Rik, EG626549, Aldh1a1
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik
Downstream geneAldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089N16.bB6Ng01-089N16.g
ACCDH902321DH902322
length1,094861
definitionDH902321|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N16, 5' end.DH902322|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,621,087 - 20,622,178)(20,716,715 - 20,717,575)
sequence
gaattcatttcattaagtcccctatgccaatattctaaatgtctccaagc
cattgtcttatgtttaagactttgatgttaagggaaattagcacatatga
cttataaaagtcatttacaattttttcatcactcattgaaagataaaatt
agactaaatgctctcactatcaaaatgttttatatgaatttccttaccca
agaccaaacagtgagaaggtggggaaatctagtcacaaaagttggatgac
ttctttattgaatcactgtttgcaaagtttgctttgtgtcgtatggaagc
ccttgtgtctgcttttggtgtgagtttagataacctcacagggattactt
tattcataaactctattttccattgaaaattacagcatactcttgcactt
ttttttttaacaagcagattctctgttacgcttttattcctgatagtctc
tgaacagaatattgtgtgtgatatttataacatcagtgtagtgcttgtca
ggagaaacatgctggattatccagtgacttgataaaagaggccgcaaact
acaatcataaagggttgctttatgcagaaaatgatgcggtaataaaagaa
gcatgcagaaccatgctttaaaaagagaataggtctaggaagacaaagtc
cacttcaggaagcctgtgaatacacttgataatcttgtgctagagtttta
ttgtgtgtaatgatacttgtaatatgaaatacaacattgggaagcataga
gtatgattgtttgcacatagttttacttaatgacaacagttacagtggga
tttgtgattcagaatataaaaaataactcccttgatttctgttgccactt
tatagctaaataacttttttttcacttttacatttcattatgcatactgg
gaaatttttataagtatatgatgccatacccaaccatgtaaatgtgaatg
tttgctttatttggattacaaagaacatgtcactcatgttatattaaaca
tatttacagttacctcatggttgcaccattatttgaaattttattcaacc
tggccttctgtgaggcacagagctaatgaatggctgacactttg
gaattccttttgcttaagaaatcaactggagaagaaattataataaaaca
cgactatgctggttactataggagatgtgtagccactgctgagagtttct
ctttactctgctggcttctttaggagttcttctgagatatcttcattgcg
actgtcttgagctcagtgtattcataaagaccatgttcacccctaaaggg
ggaagaaaattgttgataaatatgattgtgcacagcagtgtaagtcaaat
ataatccctaatgagttggtgcatgttttctttacttatctgaccaggta
cacagaaaaatatttcctgaatacacactacttcatatagttcctagctg
actgtaagctttatggccaaacatacacttgccagtggacaacaatattc
taaaaacatatattttattttaagtgactatgcattctattcattttcac
agaaaatatctattatttatatcactctatttgacagtattactaataac
ccaaatcatcactcaaccttatgtgattttatcagatctataactaaggg
aggtgcaggtcacagtgtactgtatggccactggagagcaacaggataag
ccgccagcttcactggatcctgcgtttgccacccgcctgtcacagaagtg
gtagtgctaagcaggtagagaatgggcacaatcctcattcattcagggca
ttccgaagctagggttttagcaggatcttttgattctgggcaaaagaacc
acctaatctttcttggtggatttttctatctctgggattgattgtatata
attttaaggaggagagaaactaaagattgtctgatttgagtgtgtgtgtg
tgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20621087_20622178
seq2: B6Ng01-089N16.b_50_1143

seq1  GAATTCATTTCATTAAGTCCCCTATGCCAATATTCTAAATGTCTCCAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCATTAAGTCCCCTATGCCAATATTCTAAATGTCTCCAAGC  50

seq1  CATTGTCTTATGTTTAAGACTTTGATGTTAAGGGAAATTAGCACATATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTTATGTTTAAGACTTTGATGTTAAGGGAAATTAGCACATATGA  100

seq1  CTTATAAAAGTCATTTACAATTTTTTCATCACTCATTGAAAGATAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAAAGTCATTTACAATTTTTTCATCACTCATTGAAAGATAAAATT  150

seq1  AGACTAAATGCTCTCACTATCAAAATGTTTTATATGAATTTCCTTACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAATGCTCTCACTATCAAAATGTTTTATATGAATTTCCTTACCCA  200

seq1  AGACCAAACAGTGAGAAGGTGGGGAAATCTAGTCACAAAAGTTGGATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAACAGTGAGAAGGTGGGGAAATCTAGTCACAAAAGTTGGATGAC  250

seq1  TTCTTTATTGAATCACTGTTTGCAAAGTTTGCTTTGTGTCGTATGGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTGAATCACTGTTTGCAAAGTTTGCTTTGTGTCGTATGGAAGC  300

seq1  CCTTGTGTCTGCTTTTGGTGTGAGTTTAGATAACCTCACAGGGATTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTCTGCTTTTGGTGTGAGTTTAGATAACCTCACAGGGATTACTT  350

seq1  TATTCATAAACTCTATTTTCCATTGAAAATTACAGCATACTCTTGCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAAACTCTATTTTCCATTGAAAATTACAGCATACTCTTGCACTT  400

seq1  TTTTTTTTAACAAGCAGATTCTCTGTTACGCTTTTATTCCTGATAGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAACAAGCAGATTCTCTGTTACGCTTTTATTCCTGATAGTCTC  450

seq1  TGAACAGAATATTGTGTGTGATATTTATAACATCAGTGTAGTGCTTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGAATATTGTGTGTGATATTTATAACATCAGTGTAGTGCTTGTCA  500

seq1  GGAGAAACATGCTGGATTATCCAGTGACTTGATAAAAGAGGCCGCAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACATGCTGGATTATCCAGTGACTTGATAAAAGAGGCCGCAAACT  550

seq1  ACAATCATAAAGGGTTGCTTTATGCAGAAAATGATGCGGTAATAAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCATAAAGGGTTGCTTTATGCAGAAAATGATGCGGTAATAAAAGAA  600

seq1  GCATGCAGAACCATGCTTTAAAAAGAGAATAGGTCTAGGAAGACAAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAGAACCATGCTTTAAAAAGAGAATAGGTCTAGGAAGACAAAGTC  650

seq1  CACTTCAGGAAGCCTGTGAATACACTTGATAATCTTGTGCTAGAGTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGGAAGCCTGTGAATACACTTGATAATCTTGTGCTAGAGTTTTA  700

seq1  TTGTGTGTAATGATACTTGTAATATGAAATACAACATT-GGAAGCATAGA  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGTGTGTAATGATACTTGTAATATGAAATACAACATTGGGAAGCATAGA  750

seq1  GTATGATTG-TTGCACATAGTTTTACTTAATGACAACAGTTACAGTGGGA  798
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATTGTTTGCACATAGTTTTACTTAATGACAACAGTTACAGTGGGA  800

seq1  TTTGTGATTCAGAATATAAAAAATAACT-CCTTGATTTCTGTTGCCACTT  847
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTGTGATTCAGAATATAAAAAATAACTCCCTTGATTTCTGTTGCCACTT  850

seq1  TATAAGCTAAATAACTTTTTTTTCACTTTTACATTTCATTATGCATACTG  897
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAT-AGCTAAATAACTTTTTTTTCACTTTTACATTTCATTATGCATACTG  899

seq1  GGAAATTTTTATAAGTATATGATGCCATACCCAACCATGTAAATGTGAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTTTATAAGTATATGATGCCATACCCAACCATGTAAATGTGAAT  949

seq1  GTTTGC-TTATATGGATCACAAAGAACATGTCAACTCATGTTATAATTAA  996
      |||||| |||| ||||| |||||||||||||| ||||||||||| |||||
seq2  GTTTGCTTTATTTGGATTACAAAGAACATGTC-ACTCATGTTAT-ATTAA  997

seq1  ACATATTTACAGTTA-CTCATTGTTGCACCATTATTTGAAAATTTTATTC  1045
      ||||||||||||||| ||||| |||||||||||||||| |||||||||||
seq2  ACATATTTACAGTTACCTCATGGTTGCACCATTATTTG-AAATTTTATTC  1046

seq1  AACCTTGGCCTTCTGTGA-GCACAGAGCTAATGAAT-GCTGACACTTTG  1092
      |||| ||||||||||||| ||||||||||||||||| ||||||||||||
seq2  AACC-TGGCCTTCTGTGAGGCACAGAGCTAATGAATGGCTGACACTTTG  1094

seq1: chr19_20716715_20717575
seq2: B6Ng01-089N16.g_69_928 (reverse)

seq1  CCCCCCCCCACACACACACACTCAAATCAGAACAATCTTTAGTTTCTCTC  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCCCCCCCCACACACACACACTCAAATCAG-ACAATCTTTAGTTTCTCTC  49

seq1  CTCCTTAAAATTATATACAATCAATCCCAGAGATAGAAAAATCCACCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAAAATTATATACAATCAATCCCAGAGATAGAAAAATCCACCAAG  99

seq1  AAAGATTAGGTGGTTCTTTTGCCCAGAATCAAAAGATCCTGCTAAAACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTAGGTGGTTCTTTTGCCCAGAATCAAAAGATCCTGCTAAAACCC  149

seq1  TAGCTTCGGAATGCCCTGAATGAATGAGGATTGTGCCCATTCTCTACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCGGAATGCCCTGAATGAATGAGGATTGTGCCCATTCTCTACCTG  199

seq1  CTTAGCACTACCACTTCTGTGACAGGCGGGTGGCAAACGCAGGATCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCACTACCACTTCTGTGACAGGCGGGTGGCAAACGCAGGATCCAGT  249

seq1  GAAGCTGGCGGCTTATCCTGTTGCTCTCCAGTGGCCATACAGTACACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGCGGCTTATCCTGTTGCTCTCCAGTGGCCATACAGTACACTGT  299

seq1  GACCTGCACCTCCCTTAGTTATAGATCTGATAAAATCACATAAGGTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCACCTCCCTTAGTTATAGATCTGATAAAATCACATAAGGTTGAG  349

seq1  TGATGATTTGGGTTATTAGTAATACTGTCAAATAGAGTGATATAAATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATTTGGGTTATTAGTAATACTGTCAAATAGAGTGATATAAATAAT  399

seq1  AGATATTTTCTGTGAAAATGAATAGAATGCATAGTCACTTAAAATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTCTGTGAAAATGAATAGAATGCATAGTCACTTAAAATAAAAT  449

seq1  ATATGTTTTTAGAATATTGTTGTCCACTGGCAAGTGTATGTTTGGCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTTAGAATATTGTTGTCCACTGGCAAGTGTATGTTTGGCCATA  499

seq1  AAGCTTACAGTCAGCTAGGAACTATATGAAGTAGTGTGTATTCAGGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTACAGTCAGCTAGGAACTATATGAAGTAGTGTGTATTCAGGAAAT  549

seq1  ATTTTTCTGTGTACCTGGTCAGATAAGTAAAGAAAACATGCACCAACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTGTGTACCTGGTCAGATAAGTAAAGAAAACATGCACCAACTCA  599

seq1  TTAGGGATTATATTTGACTTACACTGCTGTGCACAATCATATTTATCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGATTATATTTGACTTACACTGCTGTGCACAATCATATTTATCAAC  649

seq1  AATTTTCTTCCCCCTTTAGGGGTGAACATGGTCTTTATGAATACACTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTCCCCCTTTAGGGGTGAACATGGTCTTTATGAATACACTGAG  699

seq1  CTCAAGACAGTCGCAATGAAGATATCTCAGAAGAACTCCTAAAGAAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGACAGTCGCAATGAAGATATCTCAGAAGAACTCCTAAAGAAGCCA  749

seq1  GCAGAGTAAAGAGAAACTCTCAGCAGTGGCTACACATCTCCTATAGTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTAAAGAGAAACTCTCAGCAGTGGCTACACATCTCCTATAGTAAC  799

seq1  CAGCATAGTCGTGTTTTATTATAATTTCTTCTCCAGTTGATTTCTTAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAGTCGTGTTTTATTATAATTTCTTCTCCAGTTGATTTCTTAAGC  849

seq1  AAAAGGAATTC  861
      |||||||||||
seq2  AAAAGGAATTC  860