BAC Information

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BAC

Clone NameB6Ng01-090J01
Chromosome19 (Build37)
Map Location 48,800,328 - 48,913,366
singlet/doubletdoublet
Overlap geneSorcs3, LOC100042896
Upstream gene6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC629448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090J01.bB6Ng01-090J01.g
ACCDH902829DH902830
length1,2451,174
definitionDH902829|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J01, 5' end.DH902830|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,800,328 - 48,801,566)(48,912,200 - 48,913,366)
sequence
gaattctgtcattcaaagcttagggtatagtcattgcttaagagtaatgt
gcttggtagttgggttgggatcaaaataggtatatctatgctctgagcag
agtgggtgtgtgaaagcagcgaagcatcagcagaatagcatgaaggttta
gcgggtgaatgagagccctatggacaatggcttctgattccctcctgtga
gaactgtccagtcccacactgtgatctgctgggaagtacgcacagagaga
caaagtctgcagcttggagggctgcggtttgcttgccttcagtgctcttt
tttctattgtcgtttcaaatgttattatttcaatgtctccctggtaacct
tgacagcagccatctattctagcctaattcacaatgaaatgtgaccattc
ttattacttaaggctgagaatacactgggtgattggcatgcctgagtgcc
tattgtggtctcaggcagaggctcttggggtgacaagatgccagcagatt
ctagagcatttggccccttatagtccactacttctgggaaaggttgtttg
ccctccaaaataacgctttaaggggagctctttttcttgtggctcagatg
aagagtcggatggaaaagcttctttcctgcatcctcaatactgcatttga
ttttctttactaatatgaaaatttggaaccaattcactatgatatagcta
atcttttacagggactactatgcagcctctcagaaaaaaaatatatctaa
ggcaagaatagtagaatttcccttgaataaaattcagttacttataggag
cagacagcaaaagcagccgaggagatgtcagcataatccgcaagaatcca
gcaaagatgtgcagccagtttgcatacgtctttcaccttctctgggtcag
gtgtcaccatgaagtgtttttctctgaaatgtgattccattggaccttcc
aagcactccttgcagtatagacaagaatagcatccctgagcagatgagga
tgctaaagctcagaggaatgcctaaaagagacaacataagaggcaaagac
tagaactccaaatggagaagggacagaaatttctaagaatctgttcagta
aggaagccactaaggtttgttaggagcatggtcagattctaggaatttag
tagctgtatggattaactttctggcccttacatgttttctagccaagaag
aacgagtccggaacgttatgtcacaagatgtgtgtgtaaaaggct
gaattctgctccacctagtacacactagagtcccttgactgcggtcaact
gctcactctgctgctccagagagtccaagacagttttacttacatgcttg
gtgccttggctgagttaaaagaagccagagtcactcttcatttagggtcc
aggctttttttgtataaactctagagccaggtaaatgcacagagagcaat
gcctgagggagcctgaagcaagaactgcaggttttctaaaatgttgcatc
tggaaaattctctgcttcgtgttacttgagaggtttaaacagcctcagat
tcactaggaggaacagcagttctatgtgtcaataaaaagaatgttaaaga
attacgagcctctttaatccaccgtaatggccacattaacattgctgtaa
tacatgatagtttcaaagagatctgaactcggcacaagagaacactctca
caattaagtgcccaggcttagaaaggaactcaataccatcctgtttattt
ttctcattgaccttaaaatcctttgggagacacctgtggaaagtgctgac
cagtataaatcttatttctagtctctgaattagagagtatcaccaacaac
aaactatcatttttaaacaaaagtactatagttttaactattcaagtgca
tttcccctaagcattgcttaagcctgttcaggagaggtagggatggctta
tgttgtttttatatacactgttgtggagaaacatggaggaagatagaggc
tgctaactttctgaaaagtatctagtttcttgagtgatggtatctttcat
ggagtccacccgttacagggacttcattcacttttactgcacattccttt
gagatcttatgctctttagttattattccctgggtaaatttcagcactct
aatctcactaccgcagcaatgcttttgttccagtggagagccaaatgccg
ttcagctacacttcccatttttcattgcagatcatacaggcttcattggc
attggggggtggtgcttggcttatttaatccactaggcacagaacagtga
atcgttgtgtaatggaataattatttgtcgctgtgtcagcttacatcaga
ccaacgatgtaggttactccaggtctttaatctcttggcaaaccaattca
ttggctgataacatgcccgccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48800328_48801566
seq2: B6Ng01-090J01.b_43_1287

seq1  GAATTCTGTCATTCAAAGCTTAGGGTATAGTCATTGCTTAAGAGTAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCATTCAAAGCTTAGGGTATAGTCATTGCTTAAGAGTAATGT  50

seq1  GCTTGGTAGTTGGGTTGGGATCAAAATAGGTATATCTATGCTCTGAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTAGTTGGGTTGGGATCAAAATAGGTATATCTATGCTCTGAGCAG  100

seq1  AGTGGGTGTGTGAAAGCAGCGAAGCATCAGCAGAATAGCATGAAGGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGTGTGAAAGCAGCGAAGCATCAGCAGAATAGCATGAAGGTTTA  150

seq1  GCGGGTGAATGAGAGCCCTATGGACAATGGCTTCTGATTCCCTCCTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGTGAATGAGAGCCCTATGGACAATGGCTTCTGATTCCCTCCTGTGA  200

seq1  GAACTGTCCAGTCCCACACTGTGATCTGCTGGGAAGTACGCACAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTCCAGTCCCACACTGTGATCTGCTGGGAAGTACGCACAGAGAGA  250

seq1  CAAAGTCTGCAGCTTGGAGGGCTGCGGTTTGCTTGCCTTCAGTGCTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTGCAGCTTGGAGGGCTGCGGTTTGCTTGCCTTCAGTGCTCTTT  300

seq1  TTTCTATTGTCGTTTCAAATGTTATTATTTCAATGTCTCCCTGGTAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTGTCGTTTCAAATGTTATTATTTCAATGTCTCCCTGGTAACCT  350

seq1  TGACAGCAGCCATCTATTCTAGCCTAATTCACAATGAAATGTGACCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCAGCCATCTATTCTAGCCTAATTCACAATGAAATGTGACCATTC  400

seq1  TTATTACTTAAGGCTGAGAATACACTGGGTGATTGGCATGCCTGAGTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTTAAGGCTGAGAATACACTGGGTGATTGGCATGCCTGAGTGCC  450

seq1  TATTGTGGTCTCAGGCAGAGGCTCTTGGGGTGACAAGATGCCAGCAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGGTCTCAGGCAGAGGCTCTTGGGGTGACAAGATGCCAGCAGATT  500

seq1  CTAGAGCATTTGGCCCCTTATAGTCCACTACTTCTGGGAAAGGTTGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCATTTGGCCCCTTATAGTCCACTACTTCTGGGAAAGGTTGTTTG  550

seq1  CCCTCCAAAATAACGCTTTAAGGGGAGCTCTTTTTCTTGTGGCTCAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAAATAACGCTTTAAGGGGAGCTCTTTTTCTTGTGGCTCAGATG  600

seq1  AAGAGTCGGATGGAAAAGCTTCTTTCCTGCATCCTCAATACTGCATTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCGGATGGAAAAGCTTCTTTCCTGCATCCTCAATACTGCATTTGA  650

seq1  TTTTCTTTACTAATATGAAAATTTGGAACCAATTCACTATGATATAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTACTAATATGAAAATTTGGAACCAATTCACTATGATATAGCTA  700

seq1  ATCTTTTACAGGGACTACTATGCAGCCTCTCAGAAAAAAAATATATCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTACAGGGACTACTATGCAGCCTCTCAGAAAAAAAATATATCTAA  750

seq1  GGCAAGAATAGTAGAATTTCCCTTGAATAAAATTCAGTTACTTATAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAATAGTAGAATTTCCCTTGAATAAAATTCAGTTACTTATAGGAG  800

seq1  CAGACAGCAAAAGCAGCCGAGGAGATGTCAGCATAATCCGCAAGAATCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGCAAAAGCAGCCGAGGAGATGTCAGCATAATCCGCAAGAATCCA  850

seq1  GCAAAGATGTGCAGCCAGTTTGCATACGTCTTTCACCTTCTCTGGGTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGATGTGCAGCCAGTTTGCATACGTCTTTCACCTTCTCTGGGTCAG  900

seq1  GTGTCACCATGAAGTG-TTTTCTCTGAAATGTGATTCCATTGGACCTTCC  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTGTCACCATGAAGTGTTTTTCTCTGAAATGTGATTCCATTGGACCTTCC  950

seq1  AAGCACTCC-TGCAGTATAGACAAGAATAGCATCCCTGAGCAGATGAGGA  998
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCCTTGCAGTATAGACAAGAATAGCATCCCTGAGCAGATGAGGA  1000

seq1  TGCTAAAGCTCAGAGAAATGCCTAAAAGAGACAACATAAGA-GCAAAGAC  1047
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  TGCTAAAGCTCAGAGGAATGCCTAAAAGAGACAACATAAGAGGCAAAGAC  1050

seq1  TAGGAACT-CAAATGGAGGAAGGGACAAGAAATCTCTAAG-ATCTGTTCA  1095
      || ||||| |||||||| |||||||| |||||| |||||| |||||||||
seq2  TA-GAACTCCAAATGGA-GAAGGGAC-AGAAATTTCTAAGAATCTGTTCA  1097

seq1  GTAAGGAAG-CACTAGGGTTTG-TAGGAGCAT-GTCAGGATTCTAAGGAT  1142
      ||||||||| ||||| |||||| ||||||||| |||| ||||||| | ||
seq2  GTAAGGAAGCCACTAAGGTTTGTTAGGAGCATGGTCA-GATTCTAGGAAT  1146

seq1  TTAGTAAGCAGTGATGGA-TAACCTTCTGG-GCTCAC-TGTTTCCTAAGC  1189
      ||||| ||| || ||||| |||| ||||||  || || ||||| || |||
seq2  TTAGT-AGCTGT-ATGGATTAACTTTCTGGCCCTTACATGTTTTCT-AGC  1193

seq1  CAAAGAAG-ACGAGTCCCGGAACGTTATGTCACAGTATGTGTG---AAAA  1235
      | |||||| |||||| ||||||||||||||||||  |||||||   ||||
seq2  C-AAGAAGAACGAGT-CCGGAACGTTATGTCACAAGATGTGTGTGTAAAA  1241

seq1  GGCT  1239
      ||||
seq2  GGCT  1245

seq1: chr19_48912200_48913366
seq2: B6Ng01-090J01.g_70_1243 (reverse)

seq1  GGGGGCGGGGGATGATA-CAGACAATGAAATTTGTTTTTGCAAGAGATTA  49
      |||||| ||| ||| || ||| |||||||  ||| |||  ||||||||| 
seq2  GGGGGC-GGGCATGTTATCAGCCAATGAA--TTGGTTTGCCAAGAGATT-  46

seq1  AAAGACCTGGAGTAACCTTACATCGTTGGCTGTGATGT-AGCTGGACACA  98
      ||||||||||||||||| ||||||||||| | |||||| |||| ||||||
seq2  AAAGACCTGGAGTAACC-TACATCGTTGG-TCTGATGTAAGCT-GACACA  93

seq1  GCCGACAAAATATTATTCAATTACACAACGATTCTACTGTTCTGTGCCTA  148
      | |||||||  ||||||| ||||||||||||||| |||||||||||||||
seq2  G-CGACAAATAATTATTCCATTACACAACGATTC-ACTGTTCTGTGCCTA  141

seq1  GTGGAATAAATAAGCCAGGCA-CACCACC--ATGGCAATG-AGCCTGTAT  194
      ||||| ||||||||||| ||| |||| ||  ||| ||||| |||||||||
seq2  GTGGATTAAATAAGCCAAGCACCACCCCCCAATGCCAATGAAGCCTGTAT  191

seq1  GATCTGCAATG-AAAATGGG-AGTGTAGCTGAACGGCATTTGGCTCTCCA  242
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  GATCTGCAATGAAAAATGGGAAGTGTAGCTGAACGGCATTTGGCTCTCCA  241

seq1  CTGGAAC-AAAGCATTGCTGCGGTAGTGAGATTAAGAGTGCTGAAATTTA  291
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGGAACAAAAGCATTGCTGCGGTAGTGAGATT-AGAGTGCTGAAATTTA  290

seq1  -CCAGGGAATAATAACT-AAGAGCATAAGATCTC-AAGGAATGTGCAGT-  337
       |||||||||||||||| |||||||||||||||| |||||||||||||| 
seq2  CCCAGGGAATAATAACTAAAGAGCATAAGATCTCAAAGGAATGTGCAGTA  340

seq1  AAAGTGAATGAAGT-CCTGT-ACGGGTGGACTCCATGAAAGATACCATCA  385
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  AAAGTGAATGAAGTCCCTGTAACGGGTGGACTCCATGAAAGATACCATCA  390

seq1  CTCAAG-AACTAGATACTTTTCAGAAAGTTAGCAGCCTCTATCTTCCTCC  434
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAACTAGATACTTTTCAGAAAGTTAGCAGCCTCTATCTTCCTCC  440

seq1  ATGTTTCTCCACAACAGTGTATAT-AAAACAACATAAGCCATCCCTACCT  483
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGTTTCTCCACAACAGTGTATATAAAAACAACATAAGCCATCCCTACCT  490

seq1  CTCCTGAACAGGCTTAAGCAATGCTTAGGGGAAATGCACTTGAATAGTTA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAACAGGCTTAAGCAATGCTTAGGGGAAATGCACTTGAATAGTTA  540

seq1  AAACTATAGTACTTTTGTTTAAAAATGATAGTTTGTTGTTGGTGATACTC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATAGTACTTTTGTTTAAAAATGATAGTTTGTTGTTGGTGATACTC  590

seq1  TCTAATTCAGAGACTAGAAATAAGATTTATACTGGTCAGCACTTTCCACA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCAGAGACTAGAAATAAGATTTATACTGGTCAGCACTTTCCACA  640

seq1  GGTGTCTCCCAAAGGATTTTAAGGTCAATGAGAAAAATAAACAGGATGGT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTCCCAAAGGATTTTAAGGTCAATGAGAAAAATAAACAGGATGGT  690

seq1  ATTGAGTTCCTTTCTAAGCCTGGGCACTTAATTGTGAGAGTGTTCTCTTG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTTCCTTTCTAAGCCTGGGCACTTAATTGTGAGAGTGTTCTCTTG  740

seq1  TGCCGAGTTCAGATCTCTTTGAAACTATCATGTATTACAGCAATGTTAAT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGAGTTCAGATCTCTTTGAAACTATCATGTATTACAGCAATGTTAAT  790

seq1  GTGGCCATTACGGTGGATTAAAGAGGCTCGTAATTCTTTAACATTCTTTT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCATTACGGTGGATTAAAGAGGCTCGTAATTCTTTAACATTCTTTT  840

seq1  TATTGACACATAGAACTGCTGTTCCTCCTAGTGAATCTGAGGCTGTTTAA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACACATAGAACTGCTGTTCCTCCTAGTGAATCTGAGGCTGTTTAA  890

seq1  ACCTCTCAAGTAACACGAAGCAGAGAATTTTCCAGATGCAACATTTTAGA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCAAGTAACACGAAGCAGAGAATTTTCCAGATGCAACATTTTAGA  940

seq1  AAACCTGCAGTTCTTGCTTCAGGCTCCCTCAGGCATTGCTCTCTGTGCAT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGCAGTTCTTGCTTCAGGCTCCCTCAGGCATTGCTCTCTGTGCAT  990

seq1  TTACCTGGCTCTAGAGTTTATACAAAAAAAGCCTGGACCCTAAATGAAGA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGGCTCTAGAGTTTATACAAAAAAAGCCTGGACCCTAAATGAAGA  1040

seq1  GTGACTCTGGCTTCTTTTAACTCAGCCAAGGCACCAAGCATGTAAGTAAA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTGGCTTCTTTTAACTCAGCCAAGGCACCAAGCATGTAAGTAAA  1090

seq1  ACTGTCTTGGACTCTCTGGAGCAGCAGAGTGAGCAGTTGACCGCAGTCAA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTGGACTCTCTGGAGCAGCAGAGTGAGCAGTTGACCGCAGTCAA  1140

seq1  GGGACTCTAGTGTGTACTAGGTGGAGCAGAATTC  1167
      ||||||||||||||||||||||||||||||||||
seq2  GGGACTCTAGTGTGTACTAGGTGGAGCAGAATTC  1174