BAC Information

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BAC

Clone NameB6Ng01-102A20
Chromosome19 (Build37)
Map Location 4,445,237 - 4,542,664
singlet/doubletdoublet
Overlap geneSyt12, 2010003K11Rik
Upstream geneSaps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod
Downstream genePcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102A20.bB6Ng01-102A20.g
ACCDH911053DH911054
length8011,120
definitionDH911053|Mus musculus domesticus DNA, BAC clone: B6Ng01-102A20, 5' end.DH911054|Mus musculus domesticus DNA, BAC clone: B6Ng01-102A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,445,237 - 4,446,037)(4,541,537 - 4,542,664)
sequence
gaattcttagcttgcttatgagctcctggggaggaaaagaagaggaagac
gtatgttgggatccagagggttctccgctgcccttcaggggctttcgagg
aattggaaaaagatcacgtgtcctgggtgtcaagagcatgggctctccaa
ctgtataccctgaacttgatcataaatctgcgactttcttgctgtgtgat
cttaggcctgctacttaacttctctgagctctggtttctacatctccaca
aggagaatgccatagttgcctgcctttaagtgcttctgggctgcagcctg
agcaccaattctcaacgaccttgtaaagcccttttcccactcctggtctg
tgttctgcaccctaccccggattcccgtcccctcccagtgtgctagaaag
gcaaagaattctacccaatgcttgtcccttcctgcactgtgatgtgctgt
tactaggaatgcgtttcctgctttacatatgagtactcttcagtgtcacc
accaggaagccttccttgacttctccatcccctccttccccaaccagggc
tggtactggggttcctcttcagagccccccttaccagcaatgaaggagga
caccgtgcccctgtggggcccaaggttgagacccagtaaaatgactggag
gctgagcagggctccctgtatgcctccttcctgccccagttttattttgt
ttcaagaatcatccctggctgccaccacagccatctgggcacactgtttc
atgcagtatagaaggaaggaaagaaggaataaggggatggagggtggggg
g
gaattccaactcaagatatagctcagcagtacagtgctagcctgctggcc
tagcatatgtacaggaggtgccacaaagcaaaaaataaataaatgaaaag
aaaagacccacagggaaaagtgaaagaggggagggaacataagaaaagaa
tacaatggaaaagcagtaggctttctggaagaaagctgtttcattgtttt
agagcaatcaccagtgcagtagaactctatagaaacaggaacactgagaa
ataatatttagatcccaagattacaccaggggaggtttatggcaacccag
gagaaacataagaaacagaaagctgcccctcattctggtgtgtctaatga
gcagcctttgagcctccctgggctgaggtggcagtgttctggcccaccca
tgtggaaccacagcagcccagaaccagatcacaggtaggtactagggaag
gcttaaggcaccacaaaaagatggcatctggaggtatgtagaagacaaca
ggtagcctttttaatagcagatgtgaatactatgtaaattgtttttagaa
aacaagaatgaggctataatgaaagtaacagtgaccagagtaacaacaaa
ggctttccaagtctacccaggaatgcaaaaaatgtggaattattatggga
atttcagaaattaaaaggcaaagacagctggaaacaagcactaagacttt
gcaacaaaggacaagagagatcagggtttgatgtgtgttggggtaacctt
ttttcacattgtgtgaagatgtgtctctgtgtttccaattctcattaaac
tacctcattaaaccaaatccctcagacacttcccagtcattgcctgtgtg
ctagcctgctctctaagcaatctgcccatactgcccaaagctagaactga
ttgagccccaagaccaggccagagcacataggccaaattaaccaaccaca
gatctttaaacccgaggggtggatggaacccaatgactcaagtctcacta
aaattcagagtccatgacatgtgagaatcagacttccagaccaaatttgc
agtctacaattcttgggtggaaacctgcagctgctcccaccatattctgg
tgagggggctgcttcgatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4445237_4446037
seq2: B6Ng01-102A20.b_43_843

seq1  GAATTCTTAGCTTGCTTATGAGCTCCTGGGGAGGAAAAGAAGAGGAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCTTGCTTATGAGCTCCTGGGGAGGAAAAGAAGAGGAAGAC  50

seq1  GTATGTTGGGATCCAGAGGGTTCTCCGCTGCCCTTCAGGGGCTTTCGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTGGGATCCAGAGGGTTCTCCGCTGCCCTTCAGGGGCTTTCGAGG  100

seq1  AATTGGAAAAAGATCACGTGTCCTGGGTGTCAAGAGCATGGGCTCTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAAAAAGATCACGTGTCCTGGGTGTCAAGAGCATGGGCTCTCCAA  150

seq1  CTGTATACCCTGAACTTGATCATAAATCTGCGACTTTCTTGCTGTGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATACCCTGAACTTGATCATAAATCTGCGACTTTCTTGCTGTGTGAT  200

seq1  CTTAGGCCTGCTACTTAACTTCTCTGAGCTCTGGTTTCTACATCTCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCCTGCTACTTAACTTCTCTGAGCTCTGGTTTCTACATCTCCACA  250

seq1  AGGAGAATGCCATAGTTGCCTGCCTTTAAGTGCTTCTGGGCTGCAGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATGCCATAGTTGCCTGCCTTTAAGTGCTTCTGGGCTGCAGCCTG  300

seq1  AGCACCAATTCTCAACGACCTTGTAAAGCCCTTTTCCCACTCCTGGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAATTCTCAACGACCTTGTAAAGCCCTTTTCCCACTCCTGGTCTG  350

seq1  TGTTCTGCACCCTACCCCGGATTCCCGTCCCCTCCCAGTGTGCTAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGCACCCTACCCCGGATTCCCGTCCCCTCCCAGTGTGCTAGAAAG  400

seq1  GCAAAGAATTCTACCCAATGCTTGTCCCTTCCTGCACTGTGATGTGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAATTCTACCCAATGCTTGTCCCTTCCTGCACTGTGATGTGCTGT  450

seq1  TACTAGGAATGCGTTTCCTGCTTTACATATGAGTACTCTTCAGTGTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGAATGCGTTTCCTGCTTTACATATGAGTACTCTTCAGTGTCACC  500

seq1  ACCAGGAAGCCTTCCTTGACTTCTCCATCCCCTCCTTCCCCAACCAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAGCCTTCCTTGACTTCTCCATCCCCTCCTTCCCCAACCAGGGC  550

seq1  TGGTACTGGGGTTCCTCTTCAGAGCCCCCCTTACCAGCAATGAAGGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTGGGGTTCCTCTTCAGAGCCCCCCTTACCAGCAATGAAGGAGGA  600

seq1  CACCGTGCCCCTGTGGGGCCCAAGGTTGAGACCCAGTAAAATGACTGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGCCCCTGTGGGGCCCAAGGTTGAGACCCAGTAAAATGACTGGAG  650

seq1  GCTGAGCAGGGCTCCCTGTATGCCTCCTTCCTGCCCCAGTTTTATTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCAGGGCTCCCTGTATGCCTCCTTCCTGCCCCAGTTTTATTTTGT  700

seq1  TTCAAGAATCATCCCTGGCTGCCACCACAGCCATCTGGGCACACTGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAATCATCCCTGGCTGCCACCACAGCCATCTGGGCACACTGTTTC  750

seq1  ATGCAGTATAGAAGGAAGGAAAGAAGGAATAAGGGGATGGAGGGTGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTATAGAAGGAAGGAAAGAAGGAATAAGGGGATGGAGGGTGGGGG  800

seq1  G  801
      |
seq2  G  801

seq1: chr19_4541537_4542664
seq2: B6Ng01-102A20.g_68_1187 (reverse)

seq1  ACATCGAAGCAGCCCCCTCACAGGAATATGGTGGGAGCAGCTGGCAGGGT  50
      |||||||||||||||||||||  ||||||||||||||||||| ||| |||
seq2  ACATCGAAGCAGCCCCCTCACCAGAATATGGTGGGAGCAGCT-GCA-GGT  48

seq1  TTCCACCC-AGAATTGTAGAACTGCAAATTTTGGGTCTGGAAGTCTGATT  99
      |||||||| |||||||||| |||||||||||  |||||||||||||||||
seq2  TTCCACCCAAGAATTGTAG-ACTGCAAATTT--GGTCTGGAAGTCTGATT  95

seq1  CTCACATGTCATGGACTTCTGAATTTTAGTGAGACTTGGAGTCATTGGGT  149
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  CTCACATGTCATGGAC-TCTGAATTTTAGTGAGACTT-GAGTCATTGGGT  143

seq1  TCCATCCACCCCTCGGGTTTTAAAGATCTGTGGTTGGTTAATTTGGCCTA  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCATCCACCCCTCGGG-TTTAAAGATCTGTGGTTGGTTAATTTGGCCTA  192

seq1  TGTTGCTCTGGCCTGGTCTTGGGGCTCAATCAGTTCTAGCTTTGGGCAGT  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TGCTCTGGCCTGGTCTTGGGGCTCAATCAGTTCTAGCTTTGGGCAGT  241

seq1  ATGGGCAGATTGCTTAGAGAGCAGGCTAGCACACAGGCAATGACTGGGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAGATTGCTTAGAGAGCAGGCTAGCACACAGGCAATGACTGGGAA  291

seq1  GTGTCTGAGGGATTTGGTTTAATGAGGTAGTTTAATGAGAATTGGAAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGAGGGATTTGGTTTAATGAGGTAGTTTAATGAGAATTGGAAACA  341

seq1  CAGAGACACATCTTCACACAATGTGAAAAAAGGTTACCCCAACACACATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACATCTTCACACAATGTGAAAAAAGGTTACCCCAACACACATC  391

seq1  AAACCCTGATCTCTCTTGTCCTTTGTTGCAAAGTCTTAGTGCTTGTTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGATCTCTCTTGTCCTTTGTTGCAAAGTCTTAGTGCTTGTTTCC  441

seq1  AGCTGTCTTTGCCTTTTAATTTCTGAAATTCCCATAATAATTCCACATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTTTGCCTTTTAATTTCTGAAATTCCCATAATAATTCCACATTT  491

seq1  TTTGCATTCCTGGGTAGACTTGGAAAGCCTTTGTTGTTACTCTGGTCACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTCCTGGGTAGACTTGGAAAGCCTTTGTTGTTACTCTGGTCACT  541

seq1  GTTACTTTCATTATAGCCTCATTCTTGTTTTCTAAAAACAATTTACATAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTTCATTATAGCCTCATTCTTGTTTTCTAAAAACAATTTACATAG  591

seq1  TATTCACATCTGCTATTAAAAAGGCTACCTGTTGTCTTCTACATACCTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACATCTGCTATTAAAAAGGCTACCTGTTGTCTTCTACATACCTCC  641

seq1  AGATGCCATCTTTTTGTGGTGCCTTAAGCCTTCCCTAGTACCTACCTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCATCTTTTTGTGGTGCCTTAAGCCTTCCCTAGTACCTACCTGTG  691

seq1  ATCTGGTTCTGGGCTGCTGTGGTTCCACATGGGTGGGCCAGAACACTGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTTCTGGGCTGCTGTGGTTCCACATGGGTGGGCCAGAACACTGCC  741

seq1  ACCTCAGCCCAGGGAGGCTCAAAGGCTGCTCATTAGACACACCAGAATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGCCCAGGGAGGCTCAAAGGCTGCTCATTAGACACACCAGAATGA  791

seq1  GGGGCAGCTTTCTGTTTCTTATGTTTCTCCTGGGTTGCCATAAACCTCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGCTTTCTGTTTCTTATGTTTCTCCTGGGTTGCCATAAACCTCCC  841

seq1  CTGGTGTAATCTTGGGATCTAAATATTATTTCTCAGTGTTCCTGTTTCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTAATCTTGGGATCTAAATATTATTTCTCAGTGTTCCTGTTTCTA  891

seq1  TAGAGTTCTACTGCACTGGTGATTGCTCTAAAACAATGAAACAGCTTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTCTACTGCACTGGTGATTGCTCTAAAACAATGAAACAGCTTTCT  941

seq1  TCCAGAAAGCCTACTGCTTTTCCATTGTATTCTTTTCTTATGTTCCCTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAAGCCTACTGCTTTTCCATTGTATTCTTTTCTTATGTTCCCTCC  991

seq1  CCTCTTTCACTTTTCCCTGTGGGTCTTTTCTTTTCATTTATTTATTTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCACTTTTCCCTGTGGGTCTTTTCTTTTCATTTATTTATTTTTT  1041

seq1  GCTTTGTGGCACCTCCTGTACATATGCTAGGCCAGCAGGCTAGCACTGTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGGCACCTCCTGTACATATGCTAGGCCAGCAGGCTAGCACTGTA  1091

seq1  CTGCTGAGCTATATCTTGAGTTGGAATTC  1128
      |||||||||||||||||||||||||||||
seq2  CTGCTGAGCTATATCTTGAGTTGGAATTC  1120