BAC Information

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BAC

Clone NameB6Ng01-104E24
Chromosome13 (Build37)19 (Build37)
Map Location 94,401,644 - 94,401,89436,417,085 - 36,418,193
singlet/doubletsingletsinglet
Overlap geneBhmt
Upstream geneSerinc5, Ppia-ps13_1124.1, Thbs4, EG624619, EG218444, Papd4, LOC100039163, Homer1, Jmy, EG619883
Downstream geneBhmt2, Dmgdh, Arsb, Cycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104E24.bB6Ng01-104E24.g
ACCDH912651DH912652
length4251,108
definitionDH912651|Mus musculus domesticus DNA, BAC clone: B6Ng01-104E24, 5' end.DH912652|Mus musculus domesticus DNA, BAC clone: B6Ng01-104E24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,401,644 - 94,401,894)(36,417,085 - 36,418,193)
sequence
ttgaaggcaccacagtacctgatctcaaactatactacagatctatagta
gcaaaagacacactagtactggcacaaaaacagacatgtagagcaaaaga
atagaagaaaggactctaaaatagcaccctatacttacagcccctgaacc
gttaacagaaatgttaaaaatgtgcatttggaaaaggtttctttagcaaa
cagtgctgggagaccgatatgcataaaagtgaaagtagatctctatctcc
tccccacataaagtcaaatgaaagatggataggcgatcttactatagacc
caagaccctgaaactgccgggggggggggggggacacttgaaggtttagg
cataagcaacaacttttttttttttttgatttatttattattatatgtaa
gttcactggggctatcttcagacac
gaattcatggaacatctgaaaaggactttaagcccagcaataggatactt
tgtttccttcttagcatcattaaaggacaaaagacagacaagtgggaaca
tttgatgacctcagtgcacaacataccctaaagtaaagaaatgaaaagat
ttcaaagaccaaaagagtaaccttctgggaagctattggggagacaccat
ttctaaattatcttctggagtagaagaacagggttaaacgtggacagtgc
cctggctctaaaggaagtgccaggcataaccacagagcagaggataccgt
gggaggcagaatggaagcgggggatcagggaagtgagagagtccagaaag
cacagagctaccaaccttcatgcccttctttgaaaagcagagacagtcgt
gctgagaacacttaactgtgaaatagtcacctctccatggagtgatgttg
aaacccgatttcagaaaggaagctgaaaggatagctggagaactttcctt
ctctgccaagtaatactagtgataataaataaagaatcgccacctatcag
ttctttacaagaatcagattgtaagatacaggtttgcctggttttaaagc
ctagctcagcctcctcttagctaaatgaccttgggcaagttttataattc
ctccagtctgagttttctcatccaataacagtgatgatatctatgtcata
agcttgatataagattattcatctgaagacttcaaatttgtaaaaagacc
atgccttagtcagggtttctattcctgcacaaacatcatgaccaagaagc
aagtttggggaaggaaagggtttattcggcttacactttccatactgctg
ttcatcaccaaggaagtcaggactggagctcaagcaggtcagaagcagga
gctgatgcagaggccatggagggatgttctttactggcttgcctctcctg
gcttctcagcctgctctcttatagacccaagactaccagcccagagatga
accacccacaagggccttttcccccttgatcactaatgagaaaatgcctt
acagttggatctcatggaggcatttcttcactgaatgcctcctttctctt
ggataact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_94401644_94401894
seq2: B6Ng01-104E24.b_413_475 (reverse)

seq1  GTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATCAATCT  50
      ||||||||||| |||  ||||| ||||||||||||| ||||||| |||| 
seq2  GTGTCTGAAGATAGCCCCAGTGAACTTACATATAAT-AATAAATAAATC-  48

seq1  TTGGGTCTGAGCAAGCAGAGCCAGAGCAAGAAGAAAAAGTGTCTGAAGAT  100
                              |  || || ||||||           
seq2  ------------------------AAAAAAAAAAAAAAG-----------  63

seq1  AGCTACAGTGTACACCTTTAATCCCAGCACTCGGGAGGCAGAGTCAGGCG  150
                                                        
seq2  --------------------------------------------------  63

seq1  GATTTCTGAGTTCGAGGCCGGCTTTGTCTACAAAGTGAGTTCCAGGACAG  200
                                                        
seq2  --------------------------------------------------  63

seq1  CCAGAGCTATACAGAGAAACCATGTCTCGGAAAACTTAAAAAAAAAAAAA  250
                                                        
seq2  --------------------------------------------------  63

seq1  G  251
       
seq2  -  63

seq1: chr19_36417085_36418193
seq2: B6Ng01-104E24.g_68_1175

seq1  GAATTCATGGAACATCTGAAAAGGACTTTAAGCCCAGCAATAGGATACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGAACATCTGAAAAGGACTTTAAGCCCAGCAATAGGATACTT  50

seq1  TGTTTCCTTCTTAGCATCATTAAAGGACAAAAGACAGACAAGTGGGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTTCTTAGCATCATTAAAGGACAAAAGACAGACAAGTGGGAACA  100

seq1  TTTGATGACCTCAGTGCACAACATACCCTAAAGTAAAGAAATGAAAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGACCTCAGTGCACAACATACCCTAAAGTAAAGAAATGAAAAGAT  150

seq1  TTCAAAGACCAAAAGAGTAACCTTCTGGGAAGCTATTGGGGAGACACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGACCAAAAGAGTAACCTTCTGGGAAGCTATTGGGGAGACACCAT  200

seq1  TTCTAAATTATCTTCTGGAGTAGAAGAACAGGGTTAAACGTGGACAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATTATCTTCTGGAGTAGAAGAACAGGGTTAAACGTGGACAGTGC  250

seq1  CCTGGCTCTAAAGGAAGTGCCAGGCATAACCACAGAGCAGAGGATACCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCTAAAGGAAGTGCCAGGCATAACCACAGAGCAGAGGATACCGT  300

seq1  GGGAGGCAGAATGGAAGCGGGGGATCAGGGAAGTGAGAGAGTCCAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAATGGAAGCGGGGGATCAGGGAAGTGAGAGAGTCCAGAAAG  350

seq1  CACAGAGCTACCAACCTTCATGCCCTTCTTTGAAAAGCAGAGACAGTCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCTACCAACCTTCATGCCCTTCTTTGAAAAGCAGAGACAGTCGT  400

seq1  GCTGAGAACACTTAACTGTGAAATAGTCACCTCTCCATGGAGTGATGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAACACTTAACTGTGAAATAGTCACCTCTCCATGGAGTGATGTTG  450

seq1  AAACCCGATTTCAGAAAGGAAGCTGAAAGGATAGCTGGAGAACTTTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCGATTTCAGAAAGGAAGCTGAAAGGATAGCTGGAGAACTTTCCTT  500

seq1  CTCTGCCAAGTAATACTAGTGATAATAAATAAAGAATCGCCACCTATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCAAGTAATACTAGTGATAATAAATAAAGAATCGCCACCTATCAG  550

seq1  TTCTTTACAAGAATCAGATTGTAAGATACAGGTTTGCCTGGTTTTAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACAAGAATCAGATTGTAAGATACAGGTTTGCCTGGTTTTAAAGC  600

seq1  CTAGCTCAGCCTCCTCTTAGCTAAATGACCTTGGGCAAGTTTTATAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCAGCCTCCTCTTAGCTAAATGACCTTGGGCAAGTTTTATAATTC  650

seq1  CTCCAGTCTGAGTTTTCTCATCCAATAACAGTGATGATATCTATGTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCTGAGTTTTCTCATCCAATAACAGTGATGATATCTATGTCATA  700

seq1  AGCTTGATATAAGATTATTCATCTGAAGACTTCAAATTTGTAAAAAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGATATAAGATTATTCATCTGAAGACTTCAAATTTGTAAAAAGACC  750

seq1  ATGCCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGC  800

seq1  AAGTT--GGGAAGGAAAGGGTTTATTCGGCTTACAC-TTCCATACTGCTG  847
      |||||  ||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGTTTGGGGAAGGAAAGGGTTTATTCGGCTTACACTTTCCATACTGCTG  850

seq1  TTCATCACCAAGGAAGTCAGGACTGGAGCTCAAGCAGGTCAGGAAGCAGG  897
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCATCACCAAGGAAGTCAGGACTGGAGCTCAAGCAGGTCA-GAAGCAGG  899

seq1  AGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCCTCTCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCCTCTCCT  949

seq1  GGCTTACTCAGCCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGA  997
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  GGCTT-CTCAGCCTGCTCTCTTATAG-ACCCAAGACTACCAGCCCAGAGA  997

seq1  TGACACCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAAT  1047
      ||| |||||||||||||| | ||||||||||||||||||| |||||||||
seq2  TGA-ACCACCCACAAGGGCCTTTTCCCCCTTGATCACTAA-TGAGAAAAT  1045

seq1  GCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAA--GCTCCTT  1095
      ||||||||||||||||||||||||||||||| || ||||||   ||||||
seq2  GCCTTACAGTTGGATCTCATGGAGGCATTTCTTC-ACTGAATGCCTCCTT  1094

seq1  TCTCTGTGATAACT  1109
      |||||  |||||||
seq2  TCTCTTGGATAACT  1108