BAC Information

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BAC

Clone NameB6Ng01-107D20
Chromosome19 (Build37)
Map Location 47,961,282 - 48,061,866
singlet/doubletdoublet
Overlap geneBC063749, Gm969
Upstream geneNt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2
Downstream geneLOC670576, Sorcs3, LOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107D20.bB6Ng01-107D20.g
ACCDH914757DH914758
length1,0281,040
definitionDH914757|Mus musculus domesticus DNA, BAC clone: B6Ng01-107D20, 5' end.DH914758|Mus musculus domesticus DNA, BAC clone: B6Ng01-107D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,060,834 - 48,061,866)(47,961,282 - 47,962,326)
sequence
gaattcacttggcagccctgggtgttgttaaaattcaggccttgtgttta
cacaactttaaatgcattatctttaatagtttcttcattaaaagtaaata
aaaatgaaatcctatttgggtggttttccacttttaccctgaactttctt
gtgctatagacttatatatctcagcgttgtaattggtcagttacccagtc
tctttctgatacccatgatgctatgtacaactaaaggagaggtccatcct
tgtcttgaccaagcagactttgtctgtcactgttgtctgcagagctggta
gtgatgactagcaggaagccacagaataaaaccggatgggactttggctg
tgtccccagatcctaagagaaagggtttggctaacaaaaaattaggcctt
taaaaaagaatgggtctcaaaaccatatttcctgtatgaaatggaagaat
gcaaacccagttgaaagacggctaagatgttggtgggagacattgctaac
ggccattaatagtcaacgcaaccccaaaactacctgaaaagcaaaatgta
tatccattaatgaaagcaatgtatggcttccacagggtcttttggagggg
ggggcaggcaggtgggaattttgtctaagattttaaaaaccaaactcaaa
ttaaccacctgattctaaaactggccaatttacatttgacccagtcttaa
ccctgtaggtgacaattttcatatcatcaaattaaagggacttctcggcg
tgctttaggttaggagccttgagtgggtggagaggagggctggggaacag
gaggggtgtgctaacaggtgttatctcaagctttctccatctgtgcacgt
tcatggggttctccagctcctcctccagggctcggcacctcgtcctttcc
ttcagggattcttctttgcatgtggtacagctcctgcctggaaagacatc
ctggtttttccaagaactcttcttgaatgtgctatcttgctgcagaggct
ggggagatggtcggggataaggtacttg
gaattccaaagcaggaaatgaaacacccatttatcaccctggactaacta
cgtcaggatctcactagtgttgctggggctcaggatgtctcacaacatat
tttattaaccagcatcctgtctccaaaacaccctcccccctgatcccact
cacaggcaaaggtcaccgctggatacgtgtcacatacgcagttggttcca
acagatgcttctggttgcttggtgggtccatcaatcctggaccactggag
gataactgatggagactcgaaccttgcccgtggagatctcccatctttgc
accagcttggtctgggggttagcccagtgtactggaccttgccctgcagt
ggtggtctgacttggcttttctgtagccctctatcaacttggccaggcag
caccacaccacctaagatggagaagacatcggtttgcctgaggtggctgg
tctgccagcaggtgacttcagcagaaggctgctgccaccacttcctctac
agaaggattgtcccatgctgtttttagctagtgtatcctcatctgcctgt
ggttgttttgtgttgttgtctcttaagattcttccagcatttcagtatcc
ccagccatgcccagaggccaggcaacagcgagtgtgaagttccgacttca
acgtgcccctgctttggacttaacccagaccaaccctccctactccctac
atttcagctggctctgccagctgttggtcacaggcttccttttccaccac
ataagtagttaccaggtgctacgccatgccggttggacagaggcaggcct
atttggcaaggtgaccaggcctgccagaaaagacaggcatgtgacaggca
gtctgtggaaccatctgttccggatgtggtgccccgttgctgtggcaccg
agctactgtagagtccgtgaaccactgcttgctgggatctgagctcggaa
ggaggaattgttcctgtggtctctaccaggctgctgggtctgataacttc
tgcaggtgtctagagaggctcagtctgtgccaaactgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48060834_48061866
seq2: B6Ng01-107D20.b_42_1069 (reverse)

seq1  CAAGTGCCTTATACCCCGAGCCATCTCCCCAGCCCTCTGCAGCAAAGATA  50
      ||||| |||||| |||||| |||||||||||| |||||||||| ||||||
seq2  CAAGTACCTTAT-CCCCGA-CCATCTCCCCAG-CCTCTGCAGC-AAGATA  46

seq1  GCACATTCAAGAGAAGTTCTTTGCAAAACCAGGCTTGTCTTTTCCAGGCA  100
      ||||||||||||  ||||||| | |||||||||  |||| ||||||||||
seq2  GCACATTCAAGAAGAGTTCTTGGAAAAACCAGG-ATGTC-TTTCCAGGCA  94

seq1  GGAGCTGTACCACATGCAAAG-AGAATTCCTGAAGGAAAGGACGAGGTGC  149
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  GGAGCTGTACCACATGCAAAGAAGAATCCCTGAAGGAAAGGACGAGGTGC  144

seq1  CGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAG  194

seq1  AAAGCTTGAGGTAACACCTGTTAGCACACCCCTCCTGTTCCCCAGCCCTC  249
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGAGATAACACCTGTTAGCACACCCCTCCTGTTCCCCAGCCCTC  244

seq1  CTCTCCACCCACTCAAGGCTCCTAACCTAAAGCACGCCGAGAAGTCCCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCACCCACTCAAGGCTCCTAACCTAAAGCACGCCGAGAAGTCCCTT  294

seq1  TAATTTGATGATATGAAAATTGTCACCTACAGGGTTAAGACTGGGTCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGATGATATGAAAATTGTCACCTACAGGGTTAAGACTGGGTCAAA  344

seq1  TGTAAATTGGCCAGTTTTAGAATCAGGTGGTTAATTTGAGTTTGGTTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTGGCCAGTTTTAGAATCAGGTGGTTAATTTGAGTTTGGTTTTT  394

seq1  AAAATCTTAGACAAAATTCCCACCTGCCTGCCCCCCCCTCCAAAAGACCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTAGACAAAATTCCCACCTGCCTGCCCCCCCCTCCAAAAGACCC  444

seq1  TGTGGAAGCCATACATTGCTTTCATTAATGGATATACATTTTGCTTTTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGCCATACATTGCTTTCATTAATGGATATACATTTTGCTTTTCA  494

seq1  GGTAGTTTTGGGGTTGCGTTGACTATTAATGGCCGTTAGCAATGTCTCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTTTGGGGTTGCGTTGACTATTAATGGCCGTTAGCAATGTCTCCC  544

seq1  ACCAACATCTTAGCCGTCTTTCAACTGGGTTTGCATTCTTCCATTTCATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATCTTAGCCGTCTTTCAACTGGGTTTGCATTCTTCCATTTCATA  594

seq1  CAGGAAATATGGTTTTGAGACCCATTCTTTTTTAAAGGCCTAATTTTTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATATGGTTTTGAGACCCATTCTTTTTTAAAGGCCTAATTTTTTG  644

seq1  TTAGCCAAACCCTTTCTCTTAGGATCTGGGGACACAGCCAAAGTCCCATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCAAACCCTTTCTCTTAGGATCTGGGGACACAGCCAAAGTCCCATC  694

seq1  CGGTTTTATTCTGTGGCTTCCTGCTAGTCATCACTACCAGCTCTGCAGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTTATTCTGTGGCTTCCTGCTAGTCATCACTACCAGCTCTGCAGAC  744

seq1  AACAGTGACAGACAAAGTCTGCTTGGTCAAGACAAGGATGGACCTCTCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGACAGACAAAGTCTGCTTGGTCAAGACAAGGATGGACCTCTCCT  794

seq1  TTAGTTGTACATAGCATCATGGGTATCAGAAAGAGACTGGGTAACTGACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTACATAGCATCATGGGTATCAGAAAGAGACTGGGTAACTGACC  844

seq1  AATTACAACGCTGAGATATATAAGTCTATAGCACAAGAAAGTTCAGGGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAACGCTGAGATATATAAGTCTATAGCACAAGAAAGTTCAGGGTA  894

seq1  AAAGTGGAAAACCACCCAAATAGGATTTCATTTTTATTTACTTTTAATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAAAACCACCCAAATAGGATTTCATTTTTATTTACTTTTAATGA  944

seq1  AGAAACTATTAAAGATAATGCATTTAAAGTTGTGTAAACACAAGGCCTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTATTAAAGATAATGCATTTAAAGTTGTGTAAACACAAGGCCTGA  994

seq1  ATTTTAACAACACCCAGGGCTGCCAAGTGAATTC  1033
      ||||||||||||||||||||||||||||||||||
seq2  ATTTTAACAACACCCAGGGCTGCCAAGTGAATTC  1028

seq1: chr19_47961282_47962326
seq2: B6Ng01-107D20.g_71_1110

seq1  GAATTCCAAAGCAGGAAATGAAACACCCATTTATCACCCTGGACTAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGCAGGAAATGAAACACCCATTTATCACCCTGGACTAACTA  50

seq1  CGTCAGGATCTCACTAGTGTTGCTGGGGCTCAGGATGTCTCACAACATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGGATCTCACTAGTGTTGCTGGGGCTCAGGATGTCTCACAACATAT  100

seq1  TTTATTAACCAGCATCCTGTCTCCAAAACACCCTCCCCCCTGATCCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAACCAGCATCCTGTCTCCAAAACACCCTCCCCCCTGATCCCACT  150

seq1  CACAGGCAAAGGTCACCGCTGGATACGTGTCACATACGCAGTTGGTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCAAAGGTCACCGCTGGATACGTGTCACATACGCAGTTGGTTCCA  200

seq1  ACAGATGCTTCTGGTTGCTTGGTGGGTCCATCAATCCTGGACCACTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCTTCTGGTTGCTTGGTGGGTCCATCAATCCTGGACCACTGGAG  250

seq1  GATAACTGATGGAGACTCGAACCTTGCCCGTGGAGATCTCCCATCTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTGATGGAGACTCGAACCTTGCCCGTGGAGATCTCCCATCTTTGC  300

seq1  ACCAGCTTGGTCTGGGGGTTAGCCCAGTGTACTGGACCTTGCCCTGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTTGGTCTGGGGGTTAGCCCAGTGTACTGGACCTTGCCCTGCAGT  350

seq1  GGTGGTCTGACTTGGCTTTTCTGTAGCCCTCTATCAACTTGGCCAGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCTGACTTGGCTTTTCTGTAGCCCTCTATCAACTTGGCCAGGCAG  400

seq1  CACCACACCACCTAAGATGGAGAAGACATCGGTTTGCCTGAGGTGGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACCACCTAAGATGGAGAAGACATCGGTTTGCCTGAGGTGGCTGG  450

seq1  TCTGCCAGCAGGTGACTTCAGCAGAAGGCTGCTGCCACCACTTCCTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGCAGGTGACTTCAGCAGAAGGCTGCTGCCACCACTTCCTCTAC  500

seq1  AGAAGGATTGTCCCATGCTGTTTTTAGCTAGTGTATCCTCATCTGCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATTGTCCCATGCTGTTTTTAGCTAGTGTATCCTCATCTGCCTGT  550

seq1  GGTTGTTTTGTGTTGTTGTCTCTTAAGATTCTTCCAGCATTTCAGTATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTTGTGTTGTTGTCTCTTAAGATTCTTCCAGCATTTCAGTATCC  600

seq1  CCAGCCATGCCCAGAGGCCAGGCAACAGCGAGTGTGAAGTTCCGACTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCATGCCCAGAGGCCAGGCAACAGCGAGTGTGAAGTTCCGACTTCA  650

seq1  ACGTGCCCCTGCTTTGGACTTAACCCAGACCAACCCTCCCTACTCCCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCCCCTGCTTTGGACTTAACCCAGACCAACCCTCCCTACTCCCTAC  700

seq1  ATTTCAGCTGGCTCTGCCAGCTGTTGGTCACAGGCTTCCTTTTCCACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGCTGGCTCTGCCAGCTGTTGGTCACAGGCTTCCTTTTCCACCAC  750

seq1  ATAAGTAGTTACCAGGTGCTACGCCATGCCGGTTGGACAGAGGCAGGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAGTTACCAGGTGCTACGCCATGCCGGTTGGACAGAGGCAGGCCT  800

seq1  ATTTGGCAAGGTGACCAGGCCTGCCAGAAAAGACAGGCATGTGACAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCAAGGTGACCAGGCCTGCCAGAAAAGACAGGCATGTGACAGGCA  850

seq1  GTCTGTGGAACCATCTGTTCCGGATGTGGTGCCCCGTTGCTGTGGCACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCTGTGGAACCATCTGTTCCGGATGTGGTGCCCCGTTGCTGTGGCA-CC  899

seq1  GAGCTACTGTAGAGTCCGTGAACCACTGCTTGCTGGGATCTGAGCTCGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACTGTAGAGTCCGTGAACCACTGCTTGCTGGGATCTGAGCTCGGA  949

seq1  AGGAGGGAATTGTTCCTGTGGTCTCTACCAGGGCTGCTGGGTCTGATTAA  1000
      |||| ||||||||||||||||||||||||| |||||||||||||||| | 
seq2  AGGA-GGAATTGTTCCTGTGGTCTCTACCA-GGCTGCTGGGTCTGATAAC  997

seq1  CTCTGCAGGTGTCTAGAGAGGCTCCAGCCTGTGGCCAAACTGTTG  1045
       |||||||||||||||||||||| ||| |||| ||||||||||||
seq2  TTCTGCAGGTGTCTAGAGAGGCT-CAGTCTGT-GCCAAACTGTTG  1040