BAC Information

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BAC

Clone NameB6Ng01-109K03
Chromosome19 (Build37)7 (Build37)
Map Location 55,654,233 - 55,654,378126,929,901 - 126,931,031
singlet/doubletsingletsinglet
Overlap geneVti1a
Upstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6, LOC100043479
Downstream geneTcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109K03.bB6Ng01-109K03.g
ACCDH916490DH916491
length9061,127
definitionDH916490|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K03, 5' end.DH916491|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,654,233 - 55,654,378)(126,929,901 - 126,931,031)
sequence
gaattcactgcagctgtgtttgcctgcataagacccataccagaccaagc
aggccacattccagcacaggcaggagaggcagtcatgagccccatcccta
tctgaggagcttttgacagctactggctgctggaggaaagtgagtcagtt
ctctttaagggtatggcccctggaaggtcaaacacactcagggggacagt
tccacacccacgagtacatgggcagcacaaactggacttggtgctttact
taaaaaagtaaaaaaagagggcacgaagttgaggtagatatggtgaatct
gggaaaagtttagggctaaatattgtaaaaatatattgtgtacatgtatg
aaaaaatgtaaaggttgggtgtggtggcacatatacacctttaatcccat
cacttaaaacaggctagtggctctcttgagtcacagaacagccatggcta
tatacagtcactgtatttaaaacaaatattaataataataatacagccgg
gcagtggtggcacacacatttaatcccagcacttgggaggcagaggcagg
tggatttctgagttcgaggccaccctggtctatagagtgagctccaggac
agccagggctacacagagaaaccttgtctcaaccccctcccaaaaaaaaa
acattaaaaaaaaacaaaaccaaacacaataaagtatggaggctttgggg
ttcccagaagattatgagagtttgtcttaattttaattcctctacttttt
tacttaactaaaatatctctgagagactatatttttattgtttatttaat
ttttaatttttaatttatttttttatatatccaaattgtctggtctagtg
tttagcacatggtgggatacttaataagacttaagacaaagagttttacc
tagcag
gaattcatctgggcattttcctctgcatttactgtactttggagctcctt
ttgatatatgctggggccctggatactcatgttgcaagtagctgcttctt
caacttgatctgtacccaaatttctggccaaaatcttgggattcttctta
gtgagaacctatgattccacagacaaatccattgctttaggaaccgtatt
tataatttcttgtgtagacattatatatgacaagaaaaggaaaaatgtca
ttggtgcataaatgactacacacatgaaatcaacattttaatgaacatga
ctactacccgaggacgcaaaatgacagaataaagtgacaagacaccacta
accttgttcaaggacctggtaattttcattaagcaaccatccctgatcat
tttccaagcaagaagagcagtgttccgagaatcatctaagcctgaggaaa
taaaagtatcaaacactgaatgccgtggtactaccataaagaaataatgg
aaaacagattattttaaatagaaattggggcgttctgttccttttatgac
cacctgctgattttaatcatcatgattggcctgtgaggagctatgaaagc
actatcacgggagagaatacggcttgcatttacacaggtgaaaacttgtc
agccagctcccagacacgtcaccagccatctatacagaccaacatttgtg
aaaaattagtcatgttcagttgtttttccacaagtttatcatattatcta
ggcacttgtatttctagttgatgtgctcagtattttcattatttacttat
ttatttttaaaccaactagaaccactagatggtggtctttatctaaattc
aagaaactggaaactcaaattcagaaattatttgagttattaagaacatt
ttttttagcttaaaagctattaaaaataccttgtatctcctaaatgaaac
taatatgaaattgtttacaaaagttaatgacttattattatgaattatta
tccagttattacaaaccagaatgttccccgtcctgaaaatttctatttct
cacttcctgcaggcaccacctcagtcctttggtttcttttttaaaagcta
ttcaataaaaaagatttatttctaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_55654233_55654378
seq2: B6Ng01-109K03.b_417_697

seq1  --------------------------------------------------  0
                                                        
seq2  GTGGTGGCACATATACACCTTTAATCCCATCACTTAAAACAGGCTAGTGG  50

seq1  --------------------------------------------------  0
                                                        
seq2  CTCTCTTGAGTCACAGAACAGCCATGGCTATATACAGTCACTGTATTTAA  100

seq1  ---------------------------------GTGGTGGCACATGCCTT  17
                                       |||||||||||  | ||
seq2  AACAAATATTAATAATAATAATACAGCCGGGCAGTGGTGGCACACACATT  150

seq1  TAATCTCAGCACTTGGGAGGCAGAGGCAGGGGGGATTTCTGAGTTCGAGG  67
      ||||| |||||||||||||||||||||| || ||||||||||||||||||
seq2  TAATCCCAGCACTTGGGAGGCAGAGGCA-GGTGGATTTCTGAGTTCGAGG  199

seq1  CCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGA  117
      ||| ||||||||| | |||||| |||||||||||||||||||||||||||
seq2  CCACCCTGGTCTATAGAGTGAGCTCCAGGACAGCCAGGGCTACACAGAGA  249

seq1  AACCCTGTC---CCCCCCTCCCAAAAAAAAAA  146
      |||| ||||    |||||||||||||||||||
seq2  AACCTTGTCTCAACCCCCTCCCAAAAAAAAAA  281

seq1: chr7_126929901_126931031
seq2: B6Ng01-109K03.g_66_1192

seq1  GAATTCATCTGGGCATTTTCCTCTGCATTTACTGTACTTTGGAGCTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGGGCATTTTCCTCTGCATTTACTGTACTTTGGAGCTCCTT  50

seq1  TTGATATATGCTGGGGCCCTGGATACTCATGTTGCAAGTAGCTGCTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATATGCTGGGGCCCTGGATACTCATGTTGCAAGTAGCTGCTTCTT  100

seq1  CAACTTGATCTGTACCCAAATTTCTGGCCAAAATCTTGGGATTCTTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGATCTGTACCCAAATTTCTGGCCAAAATCTTGGGATTCTTCTTA  150

seq1  GTGAGAACCTATGATTCCACAGACAAATCCATTGCTTTAGGAACCGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACCTATGATTCCACAGACAAATCCATTGCTTTAGGAACCGTATT  200

seq1  TATAATTTCTTGTGTAGACATTATATATGACAAGAAAAGGAAAAATGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTCTTGTGTAGACATTATATATGACAAGAAAAGGAAAAATGTCA  250

seq1  TTGGTGCATAAATGACTACACACATGAAATCAACATTTTAATGAACATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCATAAATGACTACACACATGAAATCAACATTTTAATGAACATGA  300

seq1  CTACTACCCGAGGACGCAAAATGACAGAATAAAGTGACAAGACACCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACCCGAGGACGCAAAATGACAGAATAAAGTGACAAGACACCACTA  350

seq1  ACCTTGTTCAAGGACCTGGTAATTTTCATTAAGCAACCATCCCTGATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTTCAAGGACCTGGTAATTTTCATTAAGCAACCATCCCTGATCAT  400

seq1  TTTCCAAGCAAGAAGAGCAGTGTTCCGAGAATCATCTAAGCCTGAGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGCAAGAAGAGCAGTGTTCCGAGAATCATCTAAGCCTGAGGAAA  450

seq1  TAAAAGTATCAAACACTGAATGCCGTGGTACTACCATAAAGAAATAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTATCAAACACTGAATGCCGTGGTACTACCATAAAGAAATAATGG  500

seq1  AAAACAGATTATTTTAAATAGAAATTGGGGCGTTCTGTTCCTTTTATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGATTATTTTAAATAGAAATTGGGGCGTTCTGTTCCTTTTATGAC  550

seq1  CACCTGCTGATTTTAATCATCATGATTGGCCTGTGAGGAGCTATGAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTGATTTTAATCATCATGATTGGCCTGTGAGGAGCTATGAAAGC  600

seq1  ACTATCACGGGAGAGAATACGGCTTGCATTTACACAGGTGAAAACTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCACGGGAGAGAATACGGCTTGCATTTACACAGGTGAAAACTTGTC  650

seq1  AGCCAGCTCCCAGACACGTCACCAGCCATCTATACAGACCAACATTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTCCCAGACACGTCACCAGCCATCTATACAGACCAACATTTGTG  700

seq1  AAAAATTAGTCATGTTCAGTTGTTTTTCCACAAGTTTATCATATTATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAGTCATGTTCAGTTGTTTTTCCACAAGTTTATCATATTATCTA  750

seq1  GGCACTTGTATTTCTAGTTGATGTGCTCAGTATTTTCATTATTTACTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTGTATTTCTAGTTGATGTGCTCAGTATTTTCATTATTTACTTAT  800

seq1  TTATTTTTAAACCAACTAGAACCACTAGATGGTGGTCTTTATCTAAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAAACCAACTAGAACCACTAGATGGTGGTCTTTATCTAAATTC  850

seq1  AAGAAACTGGAAACTCAAAATTCAGAAATTATTTGAGTTATTAAGAACAT  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGAAACTGGAAACTC-AAATTCAGAAATTATTTGAGTTATTAAGAACAT  899

seq1  TTTTTTTAGCTTAAAAGCTATTAAAAATACCTTGTATCTCCTAAATGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGCTTAAAAGCTATTAAAAATACCTTGTATCTCCTAAATGAAA  949

seq1  CTAATATGAAATGTTTTACAAAAGTTAAATGACTTA-TATAATGAAATAA  999
      ||||||||||||  |||||||||||| ||||||||| ||| ||| ||| |
seq2  CTAATATGAAATTGTTTACAAAAGTT-AATGACTTATTATTATG-AATTA  997

seq1  TTAT-CAGTTTATACAAACCAGAATGTT-CTCGTCCTGAAAA-TTCTA-T  1045
      |||| |||||  |||||||||||||||| | ||||||||||| ||||| |
seq2  TTATCCAGTTATTACAAACCAGAATGTTCCCCGTCCTGAAAATTTCTATT  1047

seq1  TCCCACTTCCTGCAAGGCACCA-CTCAGTCCTTTGGGTTTTCTTTTATAA  1094
      || |||||||||| |||||||| |||||||||||||  |||||||| |  
seq2  TCTCACTTCCTGC-AGGCACCACCTCAGTCCTTTGG--TTTCTTTTTT--  1092

seq1  AAAAGCTAATCAAATAAAAAAAGATATATTTCTAAAA  1131
      |||||||| ||||   ||||||||| |||||||||||
seq2  AAAAGCTATTCAA--TAAAAAAGATTTATTTCTAAAA  1127