BAC Information

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BAC

Clone NameB6Ng01-110H10
Chromosome19 (Build37)
Map Location 16,960,391 - 17,013,365
singlet/doubletdoublet
Overlap genenone
Upstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
Downstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110H10.bB6Ng01-110H10.g
ACCDH917079DH917080
length1,163840
definitionDH917079|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H10, 5' end.DH917080|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,012,175 - 17,013,365)(16,960,391 - 16,961,259)
sequence
gaattccattcttacaggaacgaaagacctctgaaaagggtaacctcggc
attttataagagatgcgattgatctctctcagtgacatggctttttttcg
agtatgagagctgtcctctgtgttgtggtttgggttgaggtttggggtat
cacaggaacctgggccttaagaaggtagagggcacctcaactgagcacct
tctacaggtgggtactcagagggaagttagacaggtttcccggtctcacc
atccatggttccttcatgacagctgctcctatgatctgctctagctgtgc
acatgtgtcactggggacatgttctaaggattgtcactaaagaattgcat
cattatgtgaaccccagagtgtacctagatgggtgggttagtccatacaa
gggacctcttatcaagggacctacttaaacaagacacacatgtggctact
gccggtgttacctgctacattgcttcacagcaaacattctttaagtatga
ggtgtacaatctaaactcaggctgaggtctgtgcatacagttgcaccgct
gaggatttgtgccgtagcagccggcttgttgacccattctcaccactggc
aaagcaacaaatcacactgaacctaaataatggttctaacgtcactaaag
gcagggcttaaaacaaacaaacaacaaaaacaaagaaggaaaccattcaa
aaataaacaaacaacaacaaaaccaataaaagaaagtgtccccccccccc
cccgagctgactatatgtgcctttattcagaaatggcagagcctccctcc
aaacttctatctggggaaaagagtaacataacccttttgcagcaacatta
aaccctacaacacagtaaagaatgtttttgaaagccaatataagaaatat
gacaaataatataacataataaatatctcaaaccatgtcattgtcccttg
aaattagagaatgcaaaagcaaaaacaacaaacaaaacctttgacatttc
atcttaccccagtacaagatcagctaatgacacatcaatgctatagggat
ggtggggggagggactctcggtactgtcagtgagattcaactggtccagc
cctgggaatcagggtgaaggtctcaagctaaaatgattctatcatatgac
tagctatatagtc
gaattctgctcatgctggcagcatctgattgtttggcatggatcccaaaa
tgacatcctggaactgagtaggttgacctggagataggaggtaatgagaa
tgaatgatccacacagttcttagaatatagttgtaacaactgaagcacac
ttttcctctctctctcctttctttctttctttctttctttctttctttct
ttctttctttctttctttctttctttctttctttctttctttctttttgt
tttttgttttgtttttgtttttgtttttttttgagacagggtttctctgt
atagcccttgctgtcctggaactcactttgtagaccaggctggctttgaa
ctcagaaatctgcttgcctctgcctcccaagtactgggattaaaggcgtg
tgccaccaccgcccagctgaagcacacctttccaaggcaagaaatcaaca
gacacaaaatagcatgtagccaactgttgccctgagcaggcaggtataag
gtaagtctcaaatgctcagctgcctgaagtcttctgttaggattctattt
cacaagggactctactgattatcaactggatattcattctctttttattt
ctcaatagagaactcaaaattgtcaagtcttagatatgactataaaatga
catttttaggattctctcagaaaagaacaccattgacttttcagaggcca
ctagatggcgatttccaagggatttttactaggaaggctgataagccttt
gtattattttctcttcttcttctctctctctcttcttctcttcttctctc
ttctctcttctctctctctctccctctccctcctccctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17012175_17013365
seq2: B6Ng01-110H10.b_45_1207 (reverse)

seq1  GACTAGTATAGCTAGGTCATATGATAGATTCATTTTTAGCCTTTTGAGAA  50
      ||||| |||||||| ||||||||||||| ||| |||||||   |||||| 
seq2  GACTA-TATAGCTA-GTCATATGATAGAATCA-TTTTAGC---TTGAGA-  43

seq1  CTCTTCACACTGATTTCCCCAGTGGCTGTACCAGTTTGAAATCTCACTGA  100
        |||||| ||||||  ||||| ||||| |||||||   |||||||||||
seq2  -CCTTCACCCTGATT--CCCAG-GGCTGGACCAGTT--GAATCTCACTGA  87

seq1  CAGTAACTGAGAGTTCCCTTCCCCCCACATCCCCTATAGCATTTGATGTT  150
      |||| || ||||||  || |||||||||   |||||||||| ||||||| 
seq2  CAGT-ACCGAGAGT--CCCTCCCCCCACCATCCCTATAGCA-TTGATGT-  132

seq1  GGTCATTTAGCTGATCTTTGTTACTGGGGTAAGATGAAATGTCAAAGGTT  200
       |||| ||||||||||||   ||||||||||||||||||||||||||| |
seq2  -GTCA-TTAGCTGATCTT--GTACTGGGGTAAGATGAAATGTCAAAGG-T  177

seq1  TTTGTTTGTTTGTTTTTGCTTTTTGCATTTCTCTAATTTCAAGGGACAAT  250
      |||||||| |||||||||| ||||||| ||||||||||||||||||||||
seq2  TTTGTTTG-TTGTTTTTGC-TTTTGCA-TTCTCTAATTTCAAGGGACAAT  224

seq1  GAACATTGTTTGAGATATTTATTATGTTATATTATTTGTCATATTTCTTA  300
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  G-ACATGGTTTGAGATATTTATTATGTTATATTATTTGTCATATTTCTTA  273

seq1  TATTGGCTTTTCAAAAACATTCTTTACTGTGTTGTAGGGTTTAATGTTGC  350
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGC-TTTCAAAAACATTCTTTACTGTGTTGTAGGGTTTAATGTTGC  322

seq1  TGCAAAAGGGTTATGTTACTCTTTTCCCCAGATAGAAGTTTGGAGGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAGGGTTATGTTACTCTTTTCCCCAGATAGAAGTTTGGAGGGAGG  372

seq1  CTCTGCCATTTCTGAATAAAGGCACATATAGTCAGCTCGGGGGGGGGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCATTTCTGAATAAAGGCACATATAGTCAGCTCGGGGGGGGGGGG  422

seq1  GGACACTTTCTTTTATTGGTTTTGTTGTTGTTTGTTTATTTTTGAATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTTTCTTTTATTGGTTTTGTTGTTGTTTGTTTATTTTTGAATGGT  472

seq1  TTCCTTCTTTGTTTTTGTTGTTTGTTTGTTTTAAGCCCTGCCTTTAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTTTGTTTTTGTTGTTTGTTTGTTTTAAGCCCTGCCTTTAGTGA  522

seq1  CGTTAGAACCATTATTTAGGTTCAGTGTGATTTGTTGCTTTGCCAGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGAACCATTATTTAGGTTCAGTGTGATTTGTTGCTTTGCCAGTGGT  572

seq1  GAGAATGGGTCAACAAGCCGGCTGCTACGGCACAAATCCTCAGCGGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGGGTCAACAAGCCGGCTGCTACGGCACAAATCCTCAGCGGTGCA  622

seq1  ACTGTATGCACAGACCTCAGCCTGAGTTTAGATTGTACACCTCATACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATGCACAGACCTCAGCCTGAGTTTAGATTGTACACCTCATACTTA  672

seq1  AAGAATGTTTGCTGTGAAGCAATGTAGCAGGTAACACCGGCAGTAGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTTTGCTGTGAAGCAATGTAGCAGGTAACACCGGCAGTAGCCAC  722

seq1  ATGTGTGTCTTGTTTAAGTAGGTCCCTTGATAAGAGGTCCCTTGTATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTCTTGTTTAAGTAGGTCCCTTGATAAGAGGTCCCTTGTATGGA  772

seq1  CTAACCCACCCATCTAGGTACACTCTGGGGTTCACATAATGATGCAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCACCCATCTAGGTACACTCTGGGGTTCACATAATGATGCAATTC  822

seq1  TTTAGTGACAATCCTTAGAACATGTCCCCAGTGACACATGTGCACAGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGACAATCCTTAGAACATGTCCCCAGTGACACATGTGCACAGCTA  872

seq1  GAGCAGATCATAGGAGCAGCTGTCATGAAGGAACCATGGATGGTGAGACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGATCATAGGAGCAGCTGTCATGAAGGAACCATGGATGGTGAGACC  922

seq1  GGGAAACCTGTCTAACTTCCCTCTGAGTACCCACCTGTAGAAGGTGCTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACCTGTCTAACTTCCCTCTGAGTACCCACCTGTAGAAGGTGCTCA  972

seq1  GTTGAGGTGCCCTCTACCTTCTTAAGGCCCAGGTTCCTGTGATACCCCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGTGCCCTCTACCTTCTTAAGGCCCAGGTTCCTGTGATACCCCAA  1022

seq1  ACCTCAACCCAAACCACAACACAGAGGACAGCTCTCATACTCGAAAAAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAACCCAAACCACAACACAGAGGACAGCTCTCATACTCGAAAAAAA  1072

seq1  GCCATGTCACTGAGAGAGATCAATCGCATCTCTTATAAAATGCCGAGGTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTCACTGAGAGAGATCAATCGCATCTCTTATAAAATGCCGAGGTT  1122

seq1  ACCCTTTTCAGAGGTCTTTCGTTCCTGTAAGAATGGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTCAGAGGTCTTTCGTTCCTGTAAGAATGGAATTC  1163

seq1: chr19_16960391_16961259
seq2: B6Ng01-110H10.g_69_908

seq1  GAATTCTGCTCATGCTGGCAGCATCTGATTGTTTGGCATGGATCCCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTCATGCTGGCAGCATCTGATTGTTTGGCATGGATCCCAAAA  50

seq1  TGACATCCTGGAACTGAGTAGGTTGACCTGGAGATAGGAGGTAATGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCTGGAACTGAGTAGGTTGACCTGGAGATAGGAGGTAATGAGAA  100

seq1  TGAATGATCCACACAGTTCTTAGAATATAGTTGTAACAACTGAAGCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATCCACACAGTTCTTAGAATATAGTTGTAACAACTGAAGCACAC  150

seq1  TTTTCCTCTCTCTCTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTCTCTCTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  200

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTGT  250

seq1  TTTTTGTTTTGTTTTTGTTTTTGTTTTTTTTTGAGACAGGGTTTCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTGTTTTTGTTTTTGTTTTTTTTTGAGACAGGGTTTCTCTGT  300

seq1  ATAGCCCTTGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTTGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCTTTGAA  350

seq1  CTCAGAAATCTGCTTGCCTCTGCCTCCCAAGTACTGGGATTAAAGGCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATCTGCTTGCCTCTGCCTCCCAAGTACTGGGATTAAAGGCGTG  400

seq1  TGCCACCACCGCCCAGCTGAAGCACACCTTTCCAAGGCAAGAAATCAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCACCGCCCAGCTGAAGCACACCTTTCCAAGGCAAGAAATCAACA  450

seq1  GACACAAAATAGCATGTAGCCAACTGTTGCCCTGAGCAGGCAGGTATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAAATAGCATGTAGCCAACTGTTGCCCTGAGCAGGCAGGTATAAG  500

seq1  GTAAGTCTCAAATGCTCAGCTGCCTGAAGTCTTCTGTTAGGATTCTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCTCAAATGCTCAGCTGCCTGAAGTCTTCTGTTAGGATTCTATTT  550

seq1  CACAAGGGACTCTACTGATTATCAACTGGATATTCATTCTCTTTTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGGACTCTACTGATTATCAACTGGATATTCATTCTCTTTTTATTT  600

seq1  CTCAATAGAGAACTCAAAATTGTCAAGTCTTAGATATGACTATAAAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAGAGAACTCAAAATTGTCAAGTCTTAGATATGACTATAAAATGA  650

seq1  CATTTTTAGGATTCTCTCAGAAAAGAACACCATTGACTTTTCAGAGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAGGATTCTCTCAGAAAAGAACACCATTGACTTTTCAGAGGCCA  700

seq1  CTAGATGGCGATTTCCAAGGGATTTTTACTAGGAAGGCTGATAAGCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGGCGATTTCCAAGGGATTTTTACTAGGAAGGCTGATAAGCCTTT  750

seq1  GTATTATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  800
      |||||||||||                   ||||||||||||   |||  
seq2  GTATTATTTTC-------------------TCTTCTTCTTCT--CTCTCT  779

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCTCTCTCCC  850
       |||||||| |||||||||   ||||||   |||||||||||||||||||
seq2  CTCTTCTTC-TCTTCTTCT--CTCTTCT--CTCTTCTCTCTCTCTCTCCC  824

seq1  TCCCTCCCTCCCTCCCTCC  869
      |  |||||| |||||||||
seq2  T--CTCCCT-CCTCCCTCC  840