BAC Information

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BAC

Clone NameB6Ng01-111H15
Chromosome19 (Build37)
Map Location 36,451,869 - 36,534,059
singlet/doubletdoublet
Overlap genePcgf5, LOC668201
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195
Downstream geneHectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111H15.bB6Ng01-111H15.g
ACCDH917812DH917813
length1,0901,062
definitionDH917812|Mus musculus domesticus DNA, BAC clone: B6Ng01-111H15, 5' end.DH917813|Mus musculus domesticus DNA, BAC clone: B6Ng01-111H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,532,962 - 36,534,059)(36,451,869 - 36,452,942)
sequence
gaattcctacccaatcagagggatggatgagggatggggctcagttgtac
ggtgcttgcgtacacaggacggctgggccggtttgtccactctgcagagg
cttacctcgggctcatttcatctcagtgcagtgcgaagcagattgccaac
ccaaaagaaagaatggcatcctgggttatttttcagtgctccattttgtc
aaaatttggccacatggctaagtttagtgacaatgaggtggctgctgaga
aacacttagagaaaatataatcacaggcccttgaggaaaaaccaacaaaa
ggacttctgtaaatcctgtagaatgtactgtgtgctacacagttgtcagt
acttctactatatgcaaacccagcagagtgctgtcctgtgggccacactg
gcaggcctgtcaggacttcaattaaaacctgtcttcaatggagctaaaca
ggcataattcccttcataccacctccacagaataaaaggctttttaaaat
tttaaatctcaatttcaattttttttagtatgtttgtatttctcccattt
ttcatggggaggatatttgtattgtttatttttctcatatttgaggattt
cctaagacccgccagacggtgctgaaaatgaacaaacaaaaaaccaaacc
aaagcaaaccagtgaaggtatctgaagggagacatgcgcactgtagcaag
aaacacatttgactgttccaagaaaactcactctagtgccttcttcactg
taatagtttagtaaccaatcaaggttcctattgcctatgtacaatcaggt
tacaatgtaacagcttccatcgtctggactgcccaaactgtctctatcta
acatggttactaacagtaaaatgtctttggtgatacctatagtcttacaa
aactctttttaaaaaagattattttaccttgtaggtgcccatttatagat
atgaaaccatttatgagacagtacagatactggagacttgttacggaaac
ccaaaacagagatgcacttcagcaggaggcactttatttacagtcaataa
gctgaacagctcacaatagcaatccaccacttgctctttt
gaattccagaaaagcatctctgctgtgcactctgggaacccagtcccttc
aggccactccagagacaagtctccattctccgaagttcccccactcacat
gtcacctagacattttggattatctgcccacctgtccccgcgcgagactg
tcctgaggtccaccagcgtttctactctgtctgcagaggagacctgccag
aaaggctgcagtgctgcgtttaccgttaacttctcaggatagcctagcct
gctcccagagacagaaaactccttccatgtgagttcttgaggaagctggg
gatggggcagtgacagcacctgtttcaggggtttggtcaaagctagagtg
cagatgccccgactacctactaaggctcttcacatcgattattaaacata
tgtggtctctttctgagaagtgctctaatgagggaagacctggccaacag
tcacagcattgcgaacagatgctgctgcgctgtgacgaggcactacagtg
ctcagtggtgtccaggcaacaagggatgctgctgccctgtgacatggact
acagtgctcagtggtgtccaggcaacaaggggagaccggatccaacagtc
tcagcatttcgagcagatgctgctgtgctgtgacaggcagtgctcagtgg
tgtccaggtcttgctttgtgctgtgacaggcagtgctcagtggtgtccag
gtcttgctggaaaagctgtaccatagagaaaggttcttcctgttggtctt
ctgttctcaacagactgagtcttgaacaaactcccagtgggaattggaac
agtattgaagtggtgaagggtagggtagcctgctgggcctttagagtggg
ctaactagattttcagtgtccccattacgtatctggtgagaattcattgg
cagtagcaaatgaagccttggtttctgctctgagatggattgatgttacc
gaactcagttccctggagttttacctccacatgcaacgcatacaagatat
cttaacagagcttcacgtagtagcattagctcgtgatgatgacaggaggg
aaggatgggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_36532962_36534059
seq2: B6Ng01-111H15.b_47_1136 (reverse)

seq1  AAAAGAGCAAGTGTGTGATTTGCTATTGTGAGCTGTTCAGCTTTATTGAC  50
      ||||||||||||| |||  |||||||||||||||||||||| ||||||||
seq2  AAAAGAGCAAGTG-GTGGATTGCTATTGTGAGCTGTTCAGC-TTATTGAC  48

seq1  TGTATAAATTAAAGTGCCTCCTTGCTGAAGTGCATCTCTGTTTTGGGTTT  100
      |||   || |||||||||||| ||||||||||||||||||||||||||||
seq2  TGT---AAATAAAGTGCCTCC-TGCTGAAGTGCATCTCTGTTTTGGGTTT  94

seq1  CCGTAACAAGTCTCCAGTTATCTGTACTTGTCTCATAAATGGTTTCATAT  150
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  CCGTAACAAGTCTCCAG-TATCTGTAC-TGTCTCATAAATGGTTTCATAT  142

seq1  CTATAAATGGGCACTTACAAGGTAAAATAATCTTTTTTAAAAAGAGTTTT  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTATAAATGGGCACCTACAAGGTAAAATAATCTTTTTTAAAAAGAGTTTT  192

seq1  GTAAGACTATAGGTATCACCAAAGACATTTTACTGTTAGTAACCATGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACTATAGGTATCACCAAAGACATTTTACTGTTAGTAACCATGTTA  242

seq1  GATAGAGACAGTTTGGGCAGTCCAGACGATGGAAGCTGTTACATTGTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGACAGTTTGGGCAGTCCAGACGATGGAAGCTGTTACATTGTAAC  292

seq1  CTGATTGTACATAGGCAATAGGAACCTTGATTGGTTACTAAACTATTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGTACATAGGCAATAGGAACCTTGATTGGTTACTAAACTATTACA  342

seq1  GTGAAGAAGGCACTAGAGTGAGTTTTCTTGGAACAGTCAAATGTGTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAAGGCACTAGAGTGAGTTTTCTTGGAACAGTCAAATGTGTTTCT  392

seq1  TGCTACAGTGCGCATGTCTCCCTTCAGATACCTTCACTGGTTTGCTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGTGCGCATGTCTCCCTTCAGATACCTTCACTGGTTTGCTTTGG  442

seq1  TTTGGTTTTTTGTTTGTTCATTTTCAGCACCGTCTGGCGGGTCTTAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTTTGTTTGTTCATTTTCAGCACCGTCTGGCGGGTCTTAGGAA  492

seq1  ATCCTCAAATATGAGAAAAATAAACAATACAAATATCCTCCCCATGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAAATATGAGAAAAATAAACAATACAAATATCCTCCCCATGAAAA  542

seq1  ATGGGAGAAATACAAACATACTAAAAAAAATTGAAATTGAGATTTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGAAATACAAACATACTAAAAAAAATTGAAATTGAGATTTAAAAT  592

seq1  TTTAAAAAGCCTTTTATTCTGTGGAGGTGGTATGAAGGGAATTATGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGCCTTTTATTCTGTGGAGGTGGTATGAAGGGAATTATGCCTG  642

seq1  TTTAGCTCCATTGAAGACAGGTTTTAATTGAAGTCCTGACAGGCCTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCCATTGAAGACAGGTTTTAATTGAAGTCCTGACAGGCCTGCCA  692

seq1  GTGTGGCCCACAGGACAGCACTCTGCTGGGTTTGCATATAGTAGAAGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCCCACAGGACAGCACTCTGCTGGGTTTGCATATAGTAGAAGTAC  742

seq1  TGACAACTGTGTAGCACACAGTACATTCTACAGGATTTACAGAAGTCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTGTGTAGCACACAGTACATTCTACAGGATTTACAGAAGTCCTT  792

seq1  TTGTTGGTTTTTCCTCAAGGGCCTGTGATTATATTTTCTCTAAGTGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGTTTTTCCTCAAGGGCCTGTGATTATATTTTCTCTAAGTGTTTC  842

seq1  TCAGCAGCCACCTCATTGTCACTAAACTTAGCCATGTGGCCAAATTTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCCACCTCATTGTCACTAAACTTAGCCATGTGGCCAAATTTTGA  892

seq1  CAAAATGGAGCACTGAAAAATAACCCAGGATGCCATTCTTTCTTTTGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGAGCACTGAAAAATAACCCAGGATGCCATTCTTTCTTTTGGGT  942

seq1  TGGCAATCTGCTTCGCACTGCACTGAGATGAAATGAGCCCGAGGTAAGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATCTGCTTCGCACTGCACTGAGATGAAATGAGCCCGAGGTAAGCC  992

seq1  TCTGCAGAGTGGACAAACCGGCCCAGCCGTCCTGTGTACGCAAGCACCGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGTGGACAAACCGGCCCAGCCGTCCTGTGTACGCAAGCACCGT  1042

seq1  ACAACTGAGCCCCATCCCTCATCCATCCCTCTGATTGGGTAGGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGAGCCCCATCCCTCATCCATCCCTCTGATTGGGTAGGAATTC  1090

seq1: chr19_36451869_36452942
seq2: B6Ng01-111H15.g_68_1129

seq1  GAATTCCAGAAAAGCATCTCTGCTGTGCACTCTGGGAACCCAGTCCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAAGCATCTCTGCTGTGCACTCTGGGAACCCAGTCCCTTC  50

seq1  AGGCCACTCCAGAGACAAGTCTCCATTCTCCGAAGTTCCCCCACTCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACTCCAGAGACAAGTCTCCATTCTCCGAAGTTCCCCCACTCACAT  100

seq1  GTCACCTAGACATTTTGGATTATCTGCCCACCTGTCCCCGCGCGAGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTAGACATTTTGGATTATCTGCCCACCTGTCCCCGCGCGAGACTG  150

seq1  TCCTGAGGTCCACCAGCGTTTCTACTCTGTCTGCAGAGGAGACCTGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGTCCACCAGCGTTTCTACTCTGTCTGCAGAGGAGACCTGCCAG  200

seq1  AAAGGCTGCAGTGCTGCGTTTACCGTTAACTTCTCAGGATAGCCTAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGCAGTGCTGCGTTTACCGTTAACTTCTCAGGATAGCCTAGCCT  250

seq1  GCTCCCAGAGACAGAAAACTCCTTCCATGTGAGTTCTTGAGGAAGCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAGAGACAGAAAACTCCTTCCATGTGAGTTCTTGAGGAAGCTGGG  300

seq1  GATGGGGCAGTGACAGCACCTGTTTCAGGGGTTTGGTCAAAGCTAGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGCAGTGACAGCACCTGTTTCAGGGGTTTGGTCAAAGCTAGAGTG  350

seq1  CAGATGCCCCGACTACCTACTAAGGCTCTTCACATCGATTATTAAACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCCCCGACTACCTACTAAGGCTCTTCACATCGATTATTAAACATA  400

seq1  TGTGGTCTCTTTCTGAGAAGTGCTCTAATGAGGGAAGACCTGGCCAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTCTTTCTGAGAAGTGCTCTAATGAGGGAAGACCTGGCCAACAG  450

seq1  TCACAGCATTGCGAACAGATGCTGCTGCGCTGTGACGAGGCACTACAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCATTGCGAACAGATGCTGCTGCGCTGTGACGAGGCACTACAGTG  500

seq1  CTCAGTGGTGTCCAGGCAACAAGGGATGCTGCTGCCCTGTGACATGGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTGTCCAGGCAACAAGGGATGCTGCTGCCCTGTGACATGGACT  550

seq1  ACAGTGCTCAGTGGTGTCCAGGCAACAAGGGGAGACCGGATCCAACAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTCAGTGGTGTCCAGGCAACAAGGGGAGACCGGATCCAACAGTC  600

seq1  TCAGCATTTCGAGCAGATGCTGCTGTGCTGTGACAGGCAGTGCTCAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTTCGAGCAGATGCTGCTGTGCTGTGACAGGCAGTGCTCAGTGG  650

seq1  TGTCCAGGTCTTGCTTTGTGCTGTGACAGGCAGTGCTCAGTGGTGTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGTCTTGCTTTGTGCTGTGACAGGCAGTGCTCAGTGGTGTCCAG  700

seq1  GTCTTGCTGGAAAAGCTGTACCATAGAGAAAGGTTCTTCCTGTTGGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTGGAAAAGCTGTACCATAGAGAAAGGTTCTTCCTGTTGGTCTT  750

seq1  CTGTTCTCAACAGACTGAGTCTTGAACAAACTCCCAGTGGGAATTGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCAACAGACTGAGTCTTGAACAAACTCCCAGTGGGAATTGGAAC  800

seq1  AGTATTGAAGTGGGTGAAGGGTAGGGTAGCCTGCTGGGCCTTTAGAGTGG  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGAAGT-GGTGAAGGGTAGGGTAGCCTGCTGGGCCTTTAGAGTGG  849

seq1  GCTAACTAGATTTTCAGTGTCCCCATTACGTATCTAGTGAGAATTCATTG  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  GCTAACTAGATTTTCAGTGTCCCCATTACGTATCTGGTGAGAATTCATT-  898

seq1  GGCAGTAGGCAAATGAAGCCTTGGTTTCTGCTCTGAGAATGGGATTGATG  950
      ||||||| ||||||||||||||||||||||||||||||   |||||||||
seq2  GGCAGTA-GCAAATGAAGCCTTGGTTTCTGCTCTGAGA--TGGATTGATG  945

seq1  TAACCGAACTCAGTTCCCTGGAGTGTTTACTCCACATTGCAACGCATACA  1000
      | |||||||||||||||||||||| ||  ||||||| |||||||||||||
seq2  TTACCGAACTCAGTTCCCTGGAGTTTTACCTCCACA-TGCAACGCATACA  994

seq1  CAGATATCTAACCAGAGCTTCCACGTAGTAAGCATTAGCTCGTGATGATT  1050
       |||||||| | |||||||| |||||||| |||||||||||||||||| |
seq2  -AGATATCTTAACAGAGCTT-CACGTAGT-AGCATTAGCTCGTGATGA-T  1040

seq1  GACAGGAGGGAGAGGAATGGGAGG  1074
      ||||||||||| ||| ||||||||
seq2  GACAGGAGGGA-AGG-ATGGGAGG  1062