BAC Information

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BAC

Clone NameB6Ng01-111N21
Chromosome19 (Build37)
Map Location 37,264,086 - 37,372,330
singlet/doubletdoublet
Overlap geneCpeb3, March5, LOC668230, Ide, LOC100043010
Upstream geneLOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1
Downstream geneKif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111N21.bB6Ng01-111N21.g
ACCDH918090DH918091
length469110
definitionDH918090|Mus musculus domesticus DNA, BAC clone: B6Ng01-111N21, 5' end.DH918091|Mus musculus domesticus DNA, BAC clone: B6Ng01-111N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,371,856 - 37,372,330)(37,264,086 - 37,264,195)
sequence
cttatatttggaactttgttaatttaggatttgtcacatcctaagagatg
atagaaatgctgtaaaagaatgcaagaaataatatgaagttaaaaatgca
acagcaaaaaacaaaacaaacctggacaacaaacataggatctagatgat
tgctttgctgcagaaaaagaaagtcagggctctaatcaagtcagttgaaa
ggtcccaggctcctctccatatccactgaagacctgataaagaagtgggt
ttgcgccacctggagcaaggtggtgagtggggggagccagtggagggagg
cagacgctaacagtgtctgctcagagctcctgagttacaggggtgggagg
ggtgagagggctccccctttgttttcagaaagttcatttcacaccttgga
taaagttgtagaaaagttgcaacatagtctttgttctaaacttacaaact
gaatctcaagcctatagat
caggtaagtgccaccatacctgactctgataccttcttgggggaatctga
gaaacaaatatgtgtggtgactatctctaccaccatttggggggcggggg
gtggggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_37371856_37372330
seq2: B6Ng01-111N21.b_48_522 (reverse)

seq1  ATCTATAGGCTTGAGATTCAGTTTGTAAGTTTAGAACAAAGACTATGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAGGCTTGAGATTCAGTTTGTAAGTTTAGAACAAAGACTATGTTG  50

seq1  CAACTTTTCTACAACTTTATCCAAGGTGTGAAATGAACTTTCTGAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTCTACAACTTTATCCAAGGTGTGAAATGAACTTTCTGAAAACA  100

seq1  AAGGGGGAGCCCTCTCACCCCTCCCACCCCTGTAACTCAGGAGCTCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAGCCCTCTCACCCCTCCCACCCCTGTAACTCAGGAGCTCTGAG  150

seq1  CAGACACTGTTAGCGTCTGCCTCCCTCCACTGGCTCCCCCCACTCACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTGTTAGCGTCTGCCTCCCTCCACTGGCTCCCCCCACTCACCAC  200

seq1  CTTGCTCCAGGTGGCGCAAACCCACTTCTTTATCAGGTCTTCAGTGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCCAGGTGGCGCAAACCCACTTCTTTATCAGGTCTTCAGTGGATA  250

seq1  TGGAGAGGAGCCTGGGACCTTTCAACTGACTTGATTAGAGCCCTGACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGAGCCTGGGACCTTTCAACTGACTTGATTAGAGCCCTGACTTT  300

seq1  CTTTTTCTGCAGCAAAGCAATCATCTAGATCCTATGTTTGTTGTCCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTGCAGCAAAGCAATCATCTAGATCCTATGTTTGTTGTCCAGGT  350

seq1  TTGTTTTGTTTTTTGCTGTTGCATTTTTAACTTCATATTATTTCTTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTTTGCTGTTGCATTTTTAACTTCATATTATTTCTTGCAT  400

seq1  TCTTTTACAGCATTTCTATCATCTCTTAGGATGTGACAAATCCTAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACAGCATTTCTATCATCTCTTAGGATGTGACAAATCCTAAATTA  450

seq1  ACAAAGTTCCAAATATAAGGAATTC  475
      |||||||||||||||||||||||||
seq2  ACAAAGTTCCAAATATAAGGAATTC  475

seq1: chr19_37264086_37264195
seq2: B6Ng01-111N21.g_76_185

seq1  CAGGTAAGTGCCACCATACCTGACTCTGATACCTTCTTGGGGGAATCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGTGCCACCATACCTGACTCTGATACCTTCTTGGGGGAATCTGA  50

seq1  GAAACAAATATGTGTGGTGACTATCTCTACCACCATTTGGGGGGCGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAATATGTGTGGTGACTATCTCTACCACCATTTGGGGGGCGGGGG  100

seq1  GTGGGGGGAA  110
      ||||||||||
seq2  GTGGGGGGAA  110