BAC Information

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BAC

Clone NameB6Ng01-112B01
Chromosome19 (Build37)
Map Location 46,417,288 - 46,545,573
singlet/doubletdoublet
Overlap gene2310034G01Rik, Tmem180, Actr1a, Sufu
Upstream geneBtrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2
Downstream geneTrim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112B01.bB6Ng01-112B01.g
ACCDH918234DH918235
length4871,090
definitionDH918234|Mus musculus domesticus DNA, BAC clone: B6Ng01-112B01, 5' end.DH918235|Mus musculus domesticus DNA, BAC clone: B6Ng01-112B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,417,288 - 46,417,773)(46,544,473 - 46,545,573)
sequence
gaattccataggctgtgagctctagcacactttcctagggactcagttct
ggtgcccggctgtgctataccatcaacaccaaggctataggaaaccagat
agctcccaatcacagctgcccagtggatgctcctgggggctccttagctg
aaccttttgtttgtttgtttgtttaattaattaattaattaattaattat
tattattttttgaaatggggtttcttctgtgtagttctgggtgtcctgga
acttgcgttgtagaccaggttggccttgaactcatagatctgccttcctc
tgcctcccaagtgctgggattaacggcattagccaccaccttcaggctcc
aaacattattaatagcactgacttggggtactcttctgctcaaagccttc
agtggcttcccaaccaaacccatcctcctgtggggaatcagggtgggggc
tcctctgagacagaatacttatataactcataatacc
gaattccagcctcagtgggccaggcagaaacgctgatgaatagcctctgg
aggtagggtgggggctgccagagaagactcacatagcacacagggcttga
gagtctcaagctggagggaaaaataaattgttgaaagtcagctaaagtca
ccttggtaactgccacaacacactcacccagaacgaggacatcaaaccca
actgcaaacagctctaaagaagcggcaaagagcttaatcatctgaggaat
taatgtgacaagtgcccacatttacacctcccaccaaccttcaatcattt
gagaaaacatactttaatcttttaagaaaaaaaaaatctcaaaatgctag
ctctgcactcctggagcctgggtatttccggcatgcagcttcaatggaaa
ggcggctgcttcacacacgctggggcccggctttttgctgatttgttttt
tctggacatcgatgcagaagcatgaattatttgtgtgggccgggcgaggt
attaaatctgcagccgacacaggtttgcatggttgtcagcttaatcttag
tcataaaaaaataagtagtgtgctaggcagcatggcctcgtttttcagct
gggctttctccatagtgaaggaaggcagagctcctggggctgggggctgg
gaaggcctaggggacctaggtcccatgggatcacgagtgtgctctaggag
gcacatcgcaggctcacattctaggtgaccttggcaaatgacctttttct
ctctctctctctctctctttttttttttttttttttgagacaaagctttg
ccatgtagccccaggctggtcgtttcttctttttaattttatgttattta
tttatctactatgtgaatgcacatgtgcacagattatgccagtgtgcaaa
ggtcaggggcaatgcatagggttccttctctccgtatgtttcagacttca
gaacaagggaccaagttttacttactaaagcgacctggcttcaggtctcc
cagcaatccctcagttcttactgcaagcctgctccaaccttgaacccttc
cccaagaactcttctttagaatcagaattttggtctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_46417288_46417773
seq2: B6Ng01-112B01.b_35_521

seq1  GAATTCCATAGGCTGTGAGCTCTAGCAGAC-GCCCTAGGGACTCAGTTCT  49
      ||||||||||||||||||||||||||| ||   |||||||||||||||||
seq2  GAATTCCATAGGCTGTGAGCTCTAGCACACTTTCCTAGGGACTCAGTTCT  50

seq1  GGTGCCCGGCTGTGCTATACCATCAACACCAAGGCTATAGGAAACCAGAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCGGCTGTGCTATACCATCAACACCAAGGCTATAGGAAACCAGAT  100

seq1  AGCTCCCAATCACAGCTGCCCAGTGGATGCTCCTGGGGGCTCCTTAGCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCAATCACAGCTGCCCAGTGGATGCTCCTGGGGGCTCCTTAGCTG  150

seq1  AACCTTTTGTTTGTTTGTTTGTTTAATTAATTAATTAATTAATTAATTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTGTTTGTTTGTTTGTTTAATTAATTAATTAATTAATTAATTAT  200

seq1  TATTATTTTTTGAAATGGGGTTTCTTCTGTGTAGTTCTGGGTGTCCTGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTTTGAAATGGGGTTTCTTCTGTGTAGTTCTGGGTGTCCTGGA  250

seq1  ACTTGCGTTGTAGACCAGGTTGGCCTTGAACTCATAGATCTGCCTTCCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCGTTGTAGACCAGGTTGGCCTTGAACTCATAGATCTGCCTTCCTC  300

seq1  TGCCTCCCAAGTGCTGGGATTAACGGCATTAGCCACCACCTTCAGGCTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTGCTGGGATTAACGGCATTAGCCACCACCTTCAGGCTCC  350

seq1  AAACATTATTAATAGCACTGACTTGGGGTACTCTTCTGCTCAAAGCCTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTATTAATAGCACTGACTTGGGGTACTCTTCTGCTCAAAGCCTTC  400

seq1  AGTGGCTTCCCAACCAAACCCATCCTCCTGTGGGGAATCAGGGTGGGGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTCCCAACCAAACCCATCCTCCTGTGGGGAATCAGGGTGGGGGC  450

seq1  TCCTCTGAGACAGAATACTTATATAACTCAGAATACC  486
      |||||||||||||||||||||||||||||| ||||||
seq2  TCCTCTGAGACAGAATACTTATATAACTCATAATACC  487

seq1: chr19_46544473_46545573
seq2: B6Ng01-112B01.g_68_1157 (reverse)

seq1  AGAGAGCCCAAAATATCTGGATTCTAAAGGGAAGAGTCTCTGGGGGAA-G  49
      |||||| ||||||| ||| |||||||||  ||||||| ||| |||||| |
seq2  AGAGAGACCAAAAT-TCT-GATTCTAAA--GAAGAGT-TCTTGGGGAAGG  45

seq1  GTTCAGGGTTGGGAGCAGGCTTTGCCAGGTAGGGACTGAGGGA-TGCTGG  98
      ||||| |||| ||||||||| ||||   ||| | ||||||||| ||||||
seq2  GTTCAAGGTT-GGAGCAGGC-TTGC--AGTAAGAACTGAGGGATTGCTGG  91

seq1  GAGAACCTGAAGGCCAGGTCTGCTTTAGTAAGTAAAACTTGGTCCCTTG-  147
      ||| ||||||| |||||||| |||||||||||||||||||||||||||| 
seq2  GAG-ACCTGAA-GCCAGGTC-GCTTTAGTAAGTAAAACTTGGTCCCTTGT  138

seq1  TCTGAAGTCTGAAACCATACGGAGAGAAGGAACCCCTATGCATTGCCCCC  197
      |||||||||||||| ||||||||||||||||| |||||||||||| ||||
seq2  TCTGAAGTCTGAAA-CATACGGAGAGAAGGAA-CCCTATGCATTG-CCCC  185

seq1  TGACCTCTGCACACTGGCAT-ATCTGTGCACATGTGCATACACATAGTAG  246
      |||||| ||||||||||||| |||||||||||||||||| ||||||||||
seq2  TGACCTTTGCACACTGGCATAATCTGTGCACATGTGCATTCACATAGTAG  235

seq1  ATAAATAAATAACATAAAATTAAAAAGAAGAAACGACCAGCCT-GGGCTA  295
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATAAATAAATAACATAAAATTAAAAAGAAGAAACGACCAGCCTGGGGCTA  285

seq1  CATGGCAAAGCTTTGTCTCAAAAAAAAAAAAAAAAAAAAGAGAGAGAGAG  345
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATGGCAAAGCTTTGTCTC-AAAAAAAAAAAAAAAAAAAGAGAGAGAGAG  334

seq1  AGAGAGAGAAAAAGGTCATTTGCCAAGGTCACCTAGAATGTGAGCCTGCG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAAAAGGTCATTTGCCAAGGTCACCTAGAATGTGAGCCTGCG  384

seq1  ATGTGCCTCCTAGAGCACACTCGTGATCCCATGGGACCTAGGTCCCCTAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCTCCTAGAGCACACTCGTGATCCCATGGGACCTAGGTCCCCTAG  434

seq1  GCCTTCCCAGCCCCCAGCCCCAGGAGCTCTGCCTTCCTTCACTATGGAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCAGCCCCCAGCCCCAGGAGCTCTGCCTTCCTTCACTATGGAGA  484

seq1  AAGCCCAGCTGAAAAACGAGGCCATGCTGCCTAGCACACTACTTATTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGCTGAAAAACGAGGCCATGCTGCCTAGCACACTACTTATTTTT  534

seq1  TTATGACTAAGATTAAGCTGACAACCATGCAAACCTGTGTCGGCTGCAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACTAAGATTAAGCTGACAACCATGCAAACCTGTGTCGGCTGCAGA  584

seq1  TTTAATACCTCGCCCGGCCCACACAAATAATTCATGCTTCTGCATCGATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACCTCGCCCGGCCCACACAAATAATTCATGCTTCTGCATCGATG  634

seq1  TCCAGAAAAAACAAATCAGCAAAAAGCCGGGCCCCAGCGTGTGTGAAGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAAAAACAAATCAGCAAAAAGCCGGGCCCCAGCGTGTGTGAAGCA  684

seq1  GCCGCCTTTCCATTGAAGCTGCATGCCGGAAATACCCAGGCTCCAGGAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCTTTCCATTGAAGCTGCATGCCGGAAATACCCAGGCTCCAGGAGT  734

seq1  GCAGAGCTAGCATTTTGAGATTTTTTTTTTCTTAAAAGATTAAAGTATGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTAGCATTTTGAGATTTTTTTTTTCTTAAAAGATTAAAGTATGT  784

seq1  TTTCTCAAATGATTGAAGGTTGGTGGGAGGTGTAAATGTGGGCACTTGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAAATGATTGAAGGTTGGTGGGAGGTGTAAATGTGGGCACTTGTC  834

seq1  ACATTAATTCCTCAGATGATTAAGCTCTTTGCCGCTTCTTTAGAGCTGTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATTCCTCAGATGATTAAGCTCTTTGCCGCTTCTTTAGAGCTGTT  884

seq1  TGCAGTTGGGTTTGATGTCCTCGTTCTGGGTGAGTGTGTTGTGGCAGTTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTGGGTTTGATGTCCTCGTTCTGGGTGAGTGTGTTGTGGCAGTTA  934

seq1  CCAAGGTGACTTTAGCTGACTTTCAACAATTTATTTTTCCCTCCAGCTTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTGACTTTAGCTGACTTTCAACAATTTATTTTTCCCTCCAGCTTG  984

seq1  AGACTCTCAAGCCCTGTGTGCTATGTGAGTCTTCTCTGGCAGCCCCCACC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTCAAGCCCTGTGTGCTATGTGAGTCTTCTCTGGCAGCCCCCACC  1034

seq1  CTACCTCCAGAGGCTATTCATCAGCGTTTCTGCCTGGCCCACTGAGGCTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCCAGAGGCTATTCATCAGCGTTTCTGCCTGGCCCACTGAGGCTG  1084

seq1  GAATTC  1101
      ||||||
seq2  GAATTC  1090