BAC Information

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BAC

Clone NameB6Ng01-114B09
Chromosome19 (Build37)
Map Location 20,173,034 - 20,174,060
singlet/doubletsinglet
Overlap genenone
Upstream geneRorb, LOC100042218
Downstream geneLOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114B09.bB6Ng01-114B09.g
ACCDH919702DH919703
length1,0231,170
definitionDH919702|Mus musculus domesticus DNA, BAC clone: B6Ng01-114B09, 5' end.DH919703|Mus musculus domesticus DNA, BAC clone: B6Ng01-114B09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttcatctaagtagactgtaattgatattactaccttgtgttc
tcaatttccaaataaaattgtttttatgtttttgttctgccacaaaattt
attctcataggaaatatattaaatactgattaataaatactggcatttac
aaacttacactatgttgtaatcactgttaacaatacctgcttttctgata
tccttaatatactttcatgcatgttaacttatgcctacatagatgtgcga
acatacataaaaagcagagatgtttttcttcccctttttcttaattctat
tttattaaaactgttgtttcattaataatacttattttaaataactgaag
aacttactccatttactaattatatttaactcagtccctgatagacatct
tgcagtctcttaaggaacactgtgatgaggactgcattttaaatttgata
gcaacccttaaaatcattatatttctgggcaaaaccacatagacatttga
taatttaatcatgggaattacaacttcaagtgtcgtcactaaaataatac
cacaatgtatagcttctatataaatgtcaaaataagatatattgatagtg
atcagtaaaccaaaaaagataaggaataagagaaaaacaagtataaacta
agatatttcttaacccgtcacattctctttaggaatttacattgttaaag
atgagtaaggaataaggatgtttcacatacactgaaaattcactgtaact
atttaagtaatacttactactatgaaaaatttattaaaatagctatttat
aatctggttatataaacaatgtgatattcaaattaaaatatatacatata
tatgtaagttatttattttatactgtattactcacataacactgaaggaa
aatagaaagaacatgcaatactttttataaatagaggcccttggtcctgt
tcttagagactgtcctatgcctcagtatagggaatgccaggacaaggatt
gggagtgggtaagttggggggca
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaaggtaaaaaattcagatgacagc
agatacaggcgaggatgtggagaatggaacacttctctcttggtgggatt
gcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaa
ctggacatagtactactggaggatccagcaatacctctcctgggcatata
tacagaaggtattccaactggtatgacagatacattctccactgtattta
tagcagatttatttataatagtcagaagctggaaagaacccagatgcccc
tcaacagaggaatggatacaaaaaatgtggtatatttacacaaaggagtt
ctactcagctattaaaaagaatgaatttatgaaatccctaggcaaatgga
tggacctgtagggcatcatgcagagtgagataacccaatcacaaaagaac
tcacatgatatgtactcactgataagtggatattagcccagaaagttaga
atacccaagatacaatttccaaaacacatgaaactcaagaagaatgaaga
ccaaagtgtggacactttgccccttcttagaattaggaacaaaacaccca
tggaaggagttacagagacaaattttggagctgagatgaaaggatggacc
atctagagactgccatacctggagatccatcccataatcagcctccaaac
actgacactattgcatacactagcaagattatgccgaaaggaccctgata
tagctgtctcttctgaggctatgctggggcctagcaaacacagaagtaga
tgctcacagtcagctattggatggatcacagggccccagtggaggagcta
gagaaagtactcaaggacctaaaggggtctgcaaccctatagtggaacac
atatcaactacccagtatccccagagcttgtgtctctagctgcatatgta
tcagagatggcctatcagcatcaatgaagagaagtccattggtcttgcaa
ctttattgcctcgaacagggaaatgcagagaccagaaatggactgatagg
ttagagggaaatgtggtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20173034_20174060
seq2: B6Ng01-114B09.b_47_1069 (reverse)

seq1  TGCCCCCCAACCTACCCACTCCCATTCCTTGTCCTGGCATTCCCCTATAC  50
      ||||||||||| |||||||||||| |||||||||||||||| ||||||||
seq2  TGCCCCCCAACTTACCCACTCCCAATCCTTGTCCTGGCATT-CCCTATAC  49

seq1  TGAGGCATAGGACAGTCTCTTAAGGAACAGGACCAAGGGCCTCTATTTAT  100
      ||||||||||||||||||||  | ||||||||||||||||||||||||||
seq2  TGAGGCATAGGACAGTCTCT--AAGAACAGGACCAAGGGCCTCTATTTAT  97

seq1  GATAAAGTATTGCATGTTCTTTCTATTTTCCTTCAGTGTTATGTGAGTAA  150
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAAAGTATTGCATGTTCTTTCTATTTTCCTTCAGTGTTATGTGAGTAA  146

seq1  TACAGTATAAAATAAATAACTTACATATATATGTATATATTTTAATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTATAAAATAAATAACTTACATATATATGTATATATTTTAATTTGA  196

seq1  ATATCACATTGTTTATATAACCAGATTATAAATAGCTATTTTAATAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACATTGTTTATATAACCAGATTATAAATAGCTATTTTAATAAATT  246

seq1  TTTCATAGTAGTAAGTATTACTTAAATAGTTACAGTGAATTTTCAGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGTAGTAAGTATTACTTAAATAGTTACAGTGAATTTTCAGTGTA  296

seq1  TGTGAAACATCCTTATTCCTTACTCATCTTTAACAATGTAAATTCCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACATCCTTATTCCTTACTCATCTTTAACAATGTAAATTCCTAAA  346

seq1  GAGAATGTGACGGGTTAAGAAATATCTTAGTTTATACTTGTTTTTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTGACGGGTTAAGAAATATCTTAGTTTATACTTGTTTTTCTCTT  396

seq1  ATTCCTTATCTTTTTTGGTTTACTGATCACTATCAATATATCTTATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTATCTTTTTTGGTTTACTGATCACTATCAATATATCTTATTTTG  446

seq1  ACATTTATATAGAAGCTATACATTGTGGTATTATTTTAGTGACGACACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATATAGAAGCTATACATTGTGGTATTATTTTAGTGACGACACTT  496

seq1  GAAGTTGTAATTCCCATGATTAAATTATCAAATGTCTATGTGGTTTTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTAATTCCCATGATTAAATTATCAAATGTCTATGTGGTTTTGCC  546

seq1  CAGAAATATAATGATTTTAAGGGTTGCTATCAAATTTAAAATGCAGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATATAATGATTTTAAGGGTTGCTATCAAATTTAAAATGCAGTCCT  596

seq1  CATCACAGTGTTCCTTAAGAGACTGCAAGATGTCTATCAGGGACTGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGTGTTCCTTAAGAGACTGCAAGATGTCTATCAGGGACTGAGTT  646

seq1  AAATATAATTAGTAAATGGAGTAAGTTCTTCAGTTATTTAAAATAAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAATTAGTAAATGGAGTAAGTTCTTCAGTTATTTAAAATAAGTAT  696

seq1  TATTAATGAAACAACAGTTTTAATAAAATAGAATTAAGAAAAAGGGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGAAACAACAGTTTTAATAAAATAGAATTAAGAAAAAGGGGAAG  746

seq1  AAAAACATCTCTGCTTTTTATGTATGTTCGCACATCTATGTAGGCATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATCTCTGCTTTTTATGTATGTTCGCACATCTATGTAGGCATAAG  796

seq1  TTAACATGCATGAAAGTATATTAAGGATATCAGAAAAGCAGGTATTGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATGCATGAAAGTATATTAAGGATATCAGAAAAGCAGGTATTGTTA  846

seq1  ACAGTGATTACAACATAGTGTAAGTTTGTAAATGCCAGTATTTATTAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATTACAACATAGTGTAAGTTTGTAAATGCCAGTATTTATTAATC  896

seq1  AGTATTTAATATATTTCCTATGAGAATAAATTTTGTGGCAGAACAAAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAATATATTTCCTATGAGAATAAATTTTGTGGCAGAACAAAAAC  946

seq1  ATAAAAACAATTTTATTTGGAAATTGAGAACACAAGGTAGTAATATCAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACAATTTTATTTGGAAATTGAGAACACAAGGTAGTAATATCAAT  996

seq1  TACAGTCTACTTAGATGAAATGAATTC  1027
      |||||||||||||||||||||||||||
seq2  TACAGTCTACTTAGATGAAATGAATTC  1023