BAC Information

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BAC

Clone NameB6Ng01-115C05
Chromosome19 (Build37)
Map Location 7,902,333 - 7,903,016
singlet/doubletsinglet
Overlap geneLOC632903
Upstream geneRps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805
Downstream geneAB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115C05.bB6Ng01-115C05.g
ACCDH920480DH920481
length1,227684
definitionDH920480|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C05, 5' end.DH920481|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggttattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatgggaattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacctccttagttagagtcacgccagatattttatattatt
gtgactattgagaggtgtgtttccctaatttctttctcagcctgttattc
tttgtatagagaaagtccattgacttgtttgagtttatttatatcgagct
acttcacgagctgttatcagtttagagtctctgtagaatttaagggtcac
ttataatactatcattcatctgcaaaggaattttggacttctctttcaat
gatcctgaatccttgtgcaatggctggctaacttcagactatgtgcaaag
taaggaggggtctgccgtctgcatgac
gaattctaaggaataataataaaatgaggtaagatgaaataaaaggtagt
cagtatttgacaaaacgaacaaacataagaaataaagaacaattaggata
gtacaagaaacacgcatgcagagactcacatatccatagacatgtgcatt
ctttcgaaacacaccactggaagctaaaatgtatatgtgaacaacctatt
tgtaaaagtaaacaaagttgcagatcccgtagaactagacttacagatga
ctgtgagctgctctgtgggtgctgggaattgaacctagatcctctggggg
agcagccagtgtgtttaaccactgagccatcttccaacccctcaggtact
gagatggatgctgaaagcctaccattggactgagcacagggtccacagtg
aaggagctagagaaaggacctgaggagctgaaggggtttgcagccccata
ggaggaacaacaatatgaaaccccagagttcccagggactaaaccacaac
caaagagtacacatggtgggactcatggctccagctgcgtatgtagcaga
ggatggcctagtctgtcatcaataggaggagaggcccttggttctatgaa
ggatcccagtgtaggggaatgcctgggccaggaagacggagtgggtatgt
tggtgagcagggggaaagtggaggggataggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_7902333_7903016
seq2: B6Ng01-115C05.g_69_752

seq1  GAATTCTAAGGAATAATAATAAAATGAGGTAAGATGAAATAAAAGGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGAATAATAATAAAATGAGGTAAGATGAAATAAAAGGTAGT  50

seq1  CAGTATTTGACAAAACGAACAAACATAAGAAATAAAGAACAATTAGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTGACAAAACGAACAAACATAAGAAATAAAGAACAATTAGGATA  100

seq1  GTACAAGAAACACGCATGCAGAGACTCACATATCCATAGACATGTGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGAAACACGCATGCAGAGACTCACATATCCATAGACATGTGCATT  150

seq1  CTTTCGAAACACACCACTGGAAGCTAAAATGTATATGTGAACAACCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGAAACACACCACTGGAAGCTAAAATGTATATGTGAACAACCTATT  200

seq1  TGTAAAAGTAAACAAAGTTGCAGATCCCGTAGAACTAGACTTACAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGTAAACAAAGTTGCAGATCCCGTAGAACTAGACTTACAGATGA  250

seq1  CTGTGAGCTGCTCTGTGGGTGCTGGGAATTGAACCTAGATCCTCTGGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCTGCTCTGTGGGTGCTGGGAATTGAACCTAGATCCTCTGGGGG  300

seq1  AGCAGCCAGTGTGTTTAACCACTGAGCCATCTTCCAACCCCTCAGGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCAGTGTGTTTAACCACTGAGCCATCTTCCAACCCCTCAGGTACT  350

seq1  GAGATGGATGCTGAAAGCCTACCATTGGACTGAGCACAGGGTCCACAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGATGCTGAAAGCCTACCATTGGACTGAGCACAGGGTCCACAGTG  400

seq1  AAGGAGCTAGAGAAAGGACCTGAGGAGCTGAAGGGGTTTGCAGCCCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTAGAGAAAGGACCTGAGGAGCTGAAGGGGTTTGCAGCCCCATA  450

seq1  GGAGGAACAACAATATGAAACCCCAGAGTTCCCAGGGACTAAACCACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAACAACAATATGAAACCCCAGAGTTCCCAGGGACTAAACCACAAC  500

seq1  CAAAGAGTACACATGGTGGGACTCATGGCTCCAGCTGCGTATGTAGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTACACATGGTGGGACTCATGGCTCCAGCTGCGTATGTAGCAGA  550

seq1  GGATGGCCTAGTCTGTCATCAATAGGAGGAGAGGCCCTTGGTTCTATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCCTAGTCTGTCATCAATAGGAGGAGAGGCCCTTGGTTCTATGAA  600

seq1  GGATCCCAGTGTAGGGGAATGCCTGGGCCAGGAAGACGGAGTGGGTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCAGTGTAGGGGAATGCCTGGGCCAGGAAGACGGAGTGGGTATGT  650

seq1  TGGTGAGCAGGGGGAAAGTGGAGGGGATAGGTGG  684
      ||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCAGGGGGAAAGTGGAGGGGATAGGTGG  684