BAC Information

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BAC

Clone NameB6Ng01-118B17
Chromosome19 (Build37)
Map Location 55,467,702 - 55,582,993
singlet/doubletdoublet
Overlap geneVti1a, LOC100043479
Upstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6
Downstream geneTcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118B17.bB6Ng01-118B17.g
ACCDH922674DH922675
length1,113909
definitionDH922674|Mus musculus domesticus DNA, BAC clone: B6Ng01-118B17, 5' end.DH922675|Mus musculus domesticus DNA, BAC clone: B6Ng01-118B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,467,702 - 55,468,826)(55,582,083 - 55,582,993)
sequence
gaattcttaaggataatagcgtagttatgttaaagtatttaatatgctat
aaaatacatgtagaaatgtgtgtgttgttattgtgtggccatttgataat
acaggattatcttataaaaaatgattttgttgttgttgttgttgtgtgtt
taaaggactagaatgggtgtgcactctttgggcagttcttactatctgtt
actgaactttacattgactaaagaagggccttgtccagcatccattgatg
aacctccgtgggcgtggcttgggcttgaacgtgtagattgtcttactgtg
tcagtgtcctctttggtggctatctcagcctctcacttcactatccatgt
gtctctttccccaaagggaagggtcatcaaaggatatggccgtatgagaa
gactgtgcatcgaccatggttgtatgggagctgatagttctttcttctga
tgtacaaggagcacgtgctgagaatacaatggtgggctataaaattaaac
ctggagttagctccgcacttagaagggttttgaaaatgttacaacataat
agaatataaaggcttcccataatgcatattttatcaatttaaggatggca
ttttgctgggtgtggtgatgcacgcctttaatcccggcacttgggaggca
gaggcaggtgggtttctgagttcgaggccagcctggtctacaaagtgagt
tccaggacagccagagctacacagagaaaccctgtctcgaacaaaaagga
aaaaaaaaatggcattttgtctaaaatgacagttttgtattataaggtca
gacaaacacggacagtttaatgatgtcatagtagtagtaggcacaagttt
gatatatttctttacttgaaaatagtgaacataacaaccctgtttggggt
tttgggacatatttttcattgttttttattttatgtgtgtgagcatgttc
cctgaatgtgtgtctgcactcactgagttcatgctggtctggaagccaga
gagagcactgatttcctagaaccagagttacagtggtttctgggaaatga
cccatgtcctctggagagcagcatgctcaaactgcagcatgctctcgccc
tcttgaatacttt
gaattctttcttaatacctagatggcagcgtctccagtgacccacagttg
tttcttattatggcttccctggaaaccatttctgggaaggcacagtttcc
agcacttaactttgtttacaacagacaaacctgcttgtgtggtataaata
ggaatctgtctttaaatgctgctgagaaactaaaaggcagccatgaaaag
gagccatttcctgccctaaaggtggttttcaaagattcttagctacttta
agaatggcagcaaagcataaataataattatcaattgcctcacagtaaga
tagtaattttaaggaaaaaaaattatataaaaagaaaatagaactaggca
gagctgcccttaaaactgtccgtgttaggtccctttaccctggggttatg
aaaccctgccttgtgcgcgcatttgagatgtatatctataactcgctctt
gtccgtgcagataaacctcgccttgtctccccactgcactttgaaaagca
gcttcgcagtcgtctgacttttgatctgggtggcggcgaggcctggccac
ctgcgctgagcatgggctgtaactgagctggctttgtgccgtctcctaac
acagcgagccttttagaactgatgtgtgaatgcgctgatctacagtgcga
gtgttcaatcagaaaaacatggtggtggctgtggaggcgacagtggtggc
agcagaaggtgtgtgtgtgtgtgtgtgtgtgtgtgaaggagacactctca
ccctgggtttatgaagttgtccccatcctccagcagtaaacgaaacaggt
gcgaaaagcctccctgacccacaatggagcaggcagcagtgggaaagcag
gagccaggaattttagatgttcttcgtgatggtatatggtattaatagcc
atttgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_55467702_55468826
seq2: B6Ng01-118B17.b_49_1161

seq1  GAATTCTTAAGGATAATAGCGTAGTTATGTTAAAGTATTTAATATGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGGATAATAGCGTAGTTATGTTAAAGTATTTAATATGCTAT  50

seq1  AAAATACATGTAGAAATGTGTGTGTTGTTATTGTGTGGCCATTTGATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACATGTAGAAATGTGTGTGTTGTTATTGTGTGGCCATTTGATAAT  100

seq1  ACAGGATTATCTTATAAAAAATGATTTTGTTGTTGTTGTTGTTGTGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATTATCTTATAAAAAATGATTTTGTTGTTGTTGTTGTTGTGTGTT  150

seq1  TAAAGGACTAGAATGGGTGTGCACTCTTTGGGCAGTTCTTACTATCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGACTAGAATGGGTGTGCACTCTTTGGGCAGTTCTTACTATCTGTT  200

seq1  ACTGAACTTTACATTGACTAAAGAAGGGCCTTGTCCAGCATCCATTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTTTACATTGACTAAAGAAGGGCCTTGTCCAGCATCCATTGATG  250

seq1  AACCTCCGTGGGCGTGGCTTGGGCTTGAACGTGTAGATTGTCTTACTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCGTGGGCGTGGCTTGGGCTTGAACGTGTAGATTGTCTTACTGTG  300

seq1  TCAGTGTCCTCTTTGGTGGCTATCTCAGCCTCTCACTTCACTATCCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCCTCTTTGGTGGCTATCTCAGCCTCTCACTTCACTATCCATGT  350

seq1  GTCTCTTTCCCCAAAGGGAAGGGTCATCAAAGGATATGGCCGTATGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTCCCCAAAGGGAAGGGTCATCAAAGGATATGGCCGTATGAGAA  400

seq1  GACTGTGCATCGACCATGGTTGTATGGGAGCTGATAGTTCTTTCTTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGCATCGACCATGGTTGTATGGGAGCTGATAGTTCTTTCTTCTGA  450

seq1  TGTACAAGGAGCACGTGCTGAGAATACAATGGTGGGCTATAAAATTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAGGAGCACGTGCTGAGAATACAATGGTGGGCTATAAAATTAAAC  500

seq1  CTGGAGTTAGCTCCGCACTTAGAAGGGTTTTGAAAATGTTACAACATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTAGCTCCGCACTTAGAAGGGTTTTGAAAATGTTACAACATAAT  550

seq1  AGAATATAAAGGCTTCCCATAATGCATATTTTATCAATTTAAGGATGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAAAGGCTTCCCATAATGCATATTTTATCAATTTAAGGATGGCA  600

seq1  TTTTGCTGGGTGTGGTGATGCACGCCTTTAATCCCGGCACTTGGGAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGGGTGTGGTGATGCACGCCTTTAATCCCGGCACTTGGGAGGCA  650

seq1  GAGGCAGGTGGGTTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGTGGGTTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT  700

seq1  TCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAACAAAAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAACAAAAAGGA  750

seq1  AAAAAAAAATGGCATTTTGTCTAAAATGACAGTTTTGTATTATAAGGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATGGCATTTTGTCTAAAATGACAGTTTTGTATTATAAGGTCA  800

seq1  GACAAACACGGACAGTTTAATGATGTCATAGTAGTAGTAGGCACAAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACACGGACAGTTTAATGATGTCATAGTAGTAGTAGGCACAAGTTT  850

seq1  GATATATTTCTTTACTTGAAAATAGTGAACATAACAACCCTGTTTGGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTTCTTTACTTGAAAATAGTGAACATAACAACCCTGTTTGGGGT  900

seq1  TTT-GGACATATTTTTCATTGTTTTTTATTTTATGTGTGTGAGCATGTTC  949
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGACATATTTTTCATTGTTTTTTATTTTATGTGTGTGAGCATGTTC  950

seq1  CCTGAATGTGTGTCTGCACTCACTGAGTTCATGCTGGTCTGGAAGCCAGG  999
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCTGAATGTGTGTCTGCACTCACTGAGTTCATGCTGGTCTGGAAGCCA-G  999

seq1  AGAGAGCACTGAATTTCCTAGAACCAGAGTTACAGGTGGTTTCTGGGAAA  1049
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  AGAGAGCACTG-ATTTCCTAGAACCAGAGTTACA-GTGGTTTCTGGGAAA  1047

seq1  TGAACCCATGTCCTCTGGAAGAGCAGCAGTGCTCAAAACTGCCAAGCCAT  1099
      || ||||||||||||||| ||||||||| ||||| |||||||  |||   
seq2  TG-ACCCATGTCCTCTGG-AGAGCAGCA-TGCTC-AAACTGC--AGC--A  1089

seq1  TGCTCTCGCCCTCTCTGGAATACTTT  1125
      ||||||||||  |||| |||||||||
seq2  TGCTCTCGCC--CTCTTGAATACTTT  1113

seq1: chr19_55582083_55582993
seq2: B6Ng01-118B17.g_68_976 (reverse)

seq1  CCCACAAATGGCTATTTATTAACATATACCATCACCGAAGAACATCTTAA  50
      |||||||||||||| ||| || |||||||||||| ||||||||||| |||
seq2  CCCACAAATGGCTA-TTAATACCATATACCATCA-CGAAGAACATC-TAA  47

seq1  AATTCCTGGCTCCTGCTTTCCCACTGCTGCCTGCTCCATTGTGGGTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGGCTCCTGCTTTCCCACTGCTGCCTGCTCCATTGTGGGTCAGG  97

seq1  GAGGCTTTTCGCACCTGTTTCGTTTACTGCTGGAGG-TGGGGACAACTTC  149
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGCTTTTCGCACCTGTTTCGTTTACTGCTGGAGGATGGGGACAACTTC  147

seq1  ATAAACCCAGGGTGAGAGTGTCTCCTTCACACACACACACACACACACAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCCAGGGTGAGAGTGTCTCCTTCACACACACACACACACACACAC  197

seq1  ACACCTTCTGCTGCCACCACTGTCGCCTCCACAGCCACCACCATGTTTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCTGCTGCCACCACTGTCGCCTCCACAGCCACCACCATGTTTTT  247

seq1  CTGATTGAACACTCGCACTGTAGATCAGCGCATTCACACATCAGTTCTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGAACACTCGCACTGTAGATCAGCGCATTCACACATCAGTTCTAA  297

seq1  AAGGCTCGCTGTGTTAGGAGACGGCACAAAGCCAGCTCAGTTACAGCCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCGCTGTGTTAGGAGACGGCACAAAGCCAGCTCAGTTACAGCCCA  347

seq1  TGCTCAGCGCAGGTGGCCAGGCCTCGCCGCCACCCAGATCAAAAGTCAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCGCAGGTGGCCAGGCCTCGCCGCCACCCAGATCAAAAGTCAGA  397

seq1  CGACTGCGAAGCTGCTTTTCAAAGTGCAGTGGGGAGACAAGGCGAGGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGCGAAGCTGCTTTTCAAAGTGCAGTGGGGAGACAAGGCGAGGTTT  447

seq1  ATCTGCACGGACAAGAGCGAGTTATAGATATACATCTCAAATGCGCGCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCACGGACAAGAGCGAGTTATAGATATACATCTCAAATGCGCGCAC  497

seq1  AAGGCAGGGTTTCATAACCCCAGGGTAAAGGGACCTAACACGGACAGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGGTTTCATAACCCCAGGGTAAAGGGACCTAACACGGACAGTTT  547

seq1  TAAGGGCAGCTCTGCCTAGTTCTATTTTCTTTTTATATAATTTTTTTTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCAGCTCTGCCTAGTTCTATTTTCTTTTTATATAATTTTTTTTCC  597

seq1  TTAAAATTACTATCTTACTGTGAGGCAATTGATAATTATTATTTATGCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTACTATCTTACTGTGAGGCAATTGATAATTATTATTTATGCTT  647

seq1  TGCTGCCATTCTTAAAGTAGCTAAGAATCTTTGAAAACCACCTTTAGGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCATTCTTAAAGTAGCTAAGAATCTTTGAAAACCACCTTTAGGGC  697

seq1  AGGAAATGGCTCCTTTTCATGGCTGCCTTTTAGTTTCTCAGCAGCATTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGGCTCCTTTTCATGGCTGCCTTTTAGTTTCTCAGCAGCATTTA  747

seq1  AAGACAGATTCCTATTTATACCACACAAGCAGGTTTGTCTGTTGTAAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGATTCCTATTTATACCACACAAGCAGGTTTGTCTGTTGTAAACA  797

seq1  AAGTTAAGTGCTGGAAACTGTGCCTTCCCAGAAATGGTTTCCAGGGAAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAGTGCTGGAAACTGTGCCTTCCCAGAAATGGTTTCCAGGGAAGC  847

seq1  CATAATAAGAAACAACTGTGGGTCACTGGAGACGCTGCCATCTAGGTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAAGAAACAACTGTGGGTCACTGGAGACGCTGCCATCTAGGTATT  897

seq1  AAGAAAGAATTC  911
      ||||||||||||
seq2  AAGAAAGAATTC  909