BAC Information

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BAC

Clone NameB6Ng01-119O21
Chromosome19 (Build37)
Map Location 37,169,965 - 37,171,139
singlet/doubletsinglet
Overlap geneCpeb3
Upstream geneRpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1
Downstream geneMarch5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119O21.bB6Ng01-119O21.g
ACCDH924012DH924013
length4261,181
definitionDH924012|Mus musculus domesticus DNA, BAC clone: B6Ng01-119O21, 5' end.DH924013|Mus musculus domesticus DNA, BAC clone: B6Ng01-119O21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tctctggtggaacaggcttcaaagctggtcagaaggtggttggtgactta
aattgtgccccttctgaggcaacagaccccattttgcctgctaagtcagc
attgcagcgtgcagggtcctgcatacagtaagacctttattgtcatgtct
ccccagaggtttgcatggtacgctccagcactatgaaagctatccaggag
ggaagacgtttctcagtcagttccatactgatttctccatgtctcataga
gaaagtatgtagtgtattcagcaataggctcttaacatatagttatagtg
aacaaccaagagaaatggcagtagcctgtgttgttttggagacctttggg
gtaactcctagggaggtattctatgagaattaatttccttctccttcctt
ccttccttccttccctccctccctcc
gaattccaggcagccaggactacattgtgtctcagagagagagagagaga
gagagagagagagagagagagagagagagagagagagagagagagagaaa
gaagggaagaaagaaagaaggaaggaaggaaggaaggaaggaaggaagga
aggaaggaaagaaagaaagaaagagagagagagaagagaggagagaagga
cagaaagaaggatgctaagaagcagcacttctgtggctagagtggtccca
cgctctgacagccatctgtttccctctgctctagtcatgagctcctgaaa
gactgtttacttatttacattagaatgtatatgtctgagagtctctctgt
gtttgccatgtgtgtgcaggtgcctatggccaccagaagaggacgctaga
tcccctggaggtggagtcacattgctggttgtgggtgttgagaacagaga
gagcttcaggcctttggctctgagtgttgttttgttactgtgaggggtgg
tcctggaacaggccagtgatgcgttcattgctgcacactctcaccagggt
aaggtagtgcagtggttttttgagcagtccactgaacccttgggaggcta
ttattcatatagtcatttggttggcaaatatccatgctcaaaacaaattg
tcccagatgggctgtttggcacatgttctgaaacctcagcacttgggagg
ttgagtaggaggatctcatgtctgaggccaccctggcctgcagagtgtac
ccgaacctacccaggatagcaagaccctgtcttaaatgtgagcaatagtg
actgggtctgagatgtgtgctgggatggactatatgagatactgtctcaa
aaaagtctttttcctagggaaactatgaaattttatttcctggacatgta
actagtaactgaaatttttatgaagctgcatgtgagctactctgcagtcc
tgcctcactacctagcaccccctctgaaatatttgtttaggaaaaacatt
tcccacactcaaaatgctttaaataattcaatattatagccttaaaagaa
ggtatactcctatggtgagagatagcattaaatctgattagaactcgaga
tactttccacgaaatatgctatatacggtatttcaacagaaagaaagaaa
ggctcttgactgtcaaacttggccatgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_37169965_37171139
seq2: B6Ng01-119O21.g_68_1248

seq1  GAATTCCAGGCAGCCAGGACTACATTGTGTCTCAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCAGCCAGGACTACATTGTGTCTCAGAGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA  100

seq1  GAAGGGAAGAAAGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAGAAAGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  150

seq1  AGGAAGGAAAGAAAGAAAGAAAGAGAGAGAGAGAAGAGAGGAGAGAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAAGAAAGAAAGAAAGAGAGAGAGAGAAGAGAGGAGAGAAGGA  200

seq1  CAGAAAGAAGGATGCTAAGAAGCAGCACTTCTGTGGCTAGAGTGGTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAGGATGCTAAGAAGCAGCACTTCTGTGGCTAGAGTGGTCCCA  250

seq1  CGCTCTGACAGCCATCTGTTTCCCTCTGCTCTAGTCATGAGCTCCTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTGACAGCCATCTGTTTCCCTCTGCTCTAGTCATGAGCTCCTGAAA  300

seq1  GACTGTTTACTTATTTACATTAGAATGTATATGTCTGAGAGTCTCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTACTTATTTACATTAGAATGTATATGTCTGAGAGTCTCTCTGT  350

seq1  GTTTGCCATGTGTGTGCAGGTGCCTATGGCCACCAGAAGAGGACGCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCATGTGTGTGCAGGTGCCTATGGCCACCAGAAGAGGACGCTAGA  400

seq1  TCCCCTGGAGGTGGAGTCACATTGCTGGTTGTGGGTGTTGAGAACAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGGAGGTGGAGTCACATTGCTGGTTGTGGGTGTTGAGAACAGAGA  450

seq1  GAGCTTCAGGCCTTTGGCTCTGAGTGTTGTTTTGTTACTGTGAGGGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCAGGCCTTTGGCTCTGAGTGTTGTTTTGTTACTGTGAGGGGTGG  500

seq1  TCCTGGAACAGGCCAGTGATGCGTTCATTGCTGCACACTCTCACCAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACAGGCCAGTGATGCGTTCATTGCTGCACACTCTCACCAGGGT  550

seq1  AAGGTAGTGCAGTGGTTTTTTGAGCAGTCCACTGAACCCTTGGGAGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGTGCAGTGGTTTTTTGAGCAGTCCACTGAACCCTTGGGAGGCTA  600

seq1  TTATTCATATAGTCATTTGGTTGGCAAATATCCATGCTCAAAACAAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATATAGTCATTTGGTTGGCAAATATCCATGCTCAAAACAAATTG  650

seq1  TCCCAGATGGGCTGTTTGGCACATG-CCTGAAACCTCAGCACTTGGGAGG  699
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  TCCCAGATGGGCTGTTTGGCACATGTTCTGAAACCTCAGCACTTGGGAGG  700

seq1  TTGAGTAGGAGGATCTCATGTCTGAGGCCACCCTGGCCTGCAGAGTGTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAGGAGGATCTCATGTCTGAGGCCACCCTGGCCTGCAGAGTGTAC  750

seq1  CCGAACCTACCCAGGATAGCAAGACCCTGCCTTAAATGTGAGCAATAGTG  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCGAACCTACCCAGGATAGCAAGACCCTGTCTTAAATGTGAGCAATAGTG  800

seq1  ACTGGGTCTGAGATGTGTGCTGGGATGGACTATATGAGATACTGTCTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTCTGAGATGTGTGCTGGGATGGACTATATGAGATACTGTCTCAA  850

seq1  AAAAGGC-TATTCCTAGGGAAACTATGAAATTTTAGTTCCTGGACATGTA  898
      ||||| | | ||||||||||||||||||||||||| ||||||||||||||
seq2  AAAAGTCTTTTTCCTAGGGAAACTATGAAATTTTATTTCCTGGACATGTA  900

seq1  ACTAGTAACTGAAA-TCTTATGAAGCTGCATGTGAGCTACCCTGCAGTCC  947
      |||||||||||||| | ||||||||||||||||||||||| |||||||||
seq2  ACTAGTAACTGAAATTTTTATGAAGCTGCATGTGAGCTACTCTGCAGTCC  950

seq1  TGCCTCACTACCTAGCA-CCCCTCTGAAATATTTGTTTTAAGAAAAACAT  996
      ||||||||||||||||| ||||||||||||||||| |||| |||||||||
seq2  TGCCTCACTACCTAGCACCCCCTCTGAAATATTTG-TTTAGGAAAAACAT  999

seq1  TTCCCAACAC-CAAAATGCTTTAAATAA-TCCATATTATAGCC-TAAAAG  1043
      ||||| |||| ||||||||||||||||| || ||||||||||| ||||||
seq2  TTCCC-ACACTCAAAATGCTTTAAATAATTCAATATTATAGCCTTAAAAG  1048

seq1  -ATGTATACTCCTAT-GTGA-AGATAGCA-TAAATCTGAATTAGAACCTC  1089
       | |||||||||||| |||| |||||||| |||||||| ||||||||   
seq2  AAGGTATACTCCTATGGTGAGAGATAGCATTAAATCTG-ATTAGAACTCG  1097

seq1  AGATAC-TTCCACAGAAAATG-TATATACAGTATTTCAACAGAAGAAAAA  1137
      |||||| ||||||  || ||| ||||||| |||||||||||||| | |||
seq2  AGATACTTTCCACGAAATATGCTATATACGGTATTTCAACAGAA-AGAAA  1146

seq1  GAAAAGGCTTCTTGACTGTTCTAACTTGGCCATGTGGG  1175
      | |||||| ||||||||| || ||||||||||||||||
seq2  G-AAAGGC-TCTTGACTG-TCAAACTTGGCCATGTGGG  1181