BAC Information

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BAC

Clone NameB6Ng01-123L16
Chromosome19 (Build37)
Map Location 18,885,895 - 19,017,195
singlet/doubletdoublet
Overlap geneTrpm6, Rorb
Upstream genePcsk5, Eef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123L16.bB6Ng01-123L16.g
ACCDH926819DH926820
length1,1931,121
definitionDH926819|Mus musculus domesticus DNA, BAC clone: B6Ng01-123L16, 5' end.DH926820|Mus musculus domesticus DNA, BAC clone: B6Ng01-123L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,015,991 - 19,017,195)(18,885,895 - 18,887,034)
sequence
gaattcactctgtagaccaggctagcctcgaactcagaaatccacctgcc
tctgcctccagagtgctgggattaaatgtgtgcgccaccacgcccagctt
gataagcaactttattgccacaagaaaacaaaagttcgtcatgattttag
atccctattctaataaaaagcaaatgactaatttttccatgagataacat
acagtgtggtcaggctcagatttcggagcttggctaaagtctaaattgga
tctctgctgcttacatcttttgcagagagcagcctttacccccctccccc
tttcagtctttgaaagaagcagtatgtgagctggaagcatcacagctcaa
ctttcattgtctacttgactatgtctatgagggcacgtccagagatgtct
aagtaaacaagaaatacccatcctgaatgtgctagtgatgtcttggttac
tttctattgctattaacagacactatgaccaagacaatttataaaagaaa
acatttacttgcgtgcgcaagtccatgaccataatggcaaggagttagtt
tgactgtagatagacaggcatggctctggagcaatagctgagagcttata
tccacatccaaaagttggaggcagaggaggtagggtctggcttggcctgg
gcttttgaaatcacaaaactcactcccccaaaggtcatactactaatctc
tcccaaaacagttctatcaactagaaaccaagcattcaaatgtctgagtc
tttgggagccattcccattcaaaccatcacaggggacctgaaaaattcag
gtcacaggagctgagggtatagtcaaaataaatcaaagtcagccacattc
taatatttgcacacacacaccccacctctgcttcctgcctgccttgataa
aatttcctctgtcccaacactccctccgtgccatgaggagctgacacttc
tgaaactgtgactcaaatacaaatcctgcacatgacggtatcctttggta
ttttggtgcaacgactagaagtaactaatacaatagctttcgtgtgtgtc
gtcagcaaacgcagccacactataaaccatgtgtattgactaataaatcc
tccagtcttcctgggaagcagaatgttaatgtcaccatctgtgctggcta
ggtttatgtcacctggacacagaactaaggtcatttggaaaga
gaattcagatgcgtaatatggaacaaaagagtatgctttctcagatgtcg
ggaaatagtgtttatcagaaggagactgggagatgctattgtgtgagtaa
tctccagagacattaattattaaccctggacaagagacagatgtgttgag
tatttgagaagacatacatttatctttcactgtagtctggaaagaaaatg
atatcactacaataaccttttttgtttatctctcttttgttttctttaat
aaacaaaatgacaatatataccagagtgtgagcagctttgctcagggcct
ctcccagcactctcttcatcagagacattcactgagaaatagaaaggagt
cttctgaaagcacactgcactcccagttcttcaggacggcccagccctac
aaatccaaggtacactcctttgttggtagagttgaaaacaaagttggttt
tgcagactgagatcacttctttattgacactggagacaggggagtaccaa
tgaagaatcattccccagcatcataaataaacacatgatgttattcacaa
agatcactgctgatcctgctggtcttcagcagtacagggccctgacaacc
cagcgaaagtctgtgcttgcctctcaggttctcttcctggttttcacctc
tgccctgtgcagttggtgtctgaggcaggatgtgtatgccatggtgttac
gtactcattagcctgccatgacactcttaacctccccactcaagctccac
accctttgtagctctctgttcttgggaggtggttccttttgtatcttcct
ttcctcacaagtttttctggaagttagttttatcgtaaattttccagttt
aacaaagatgtggtttgtggggtctttagcctactctttctgggcagaag
tgctttggctaagatttccaatggagaatcatgagttgtggctggaggac
cgcttcctttcacctgctgtggcatgggcctagtaccattatggacagat
tatttttttatctatgaaggatagaagaagcactctaatgtttttgatag
aaggcctcaattcaacgaatgtttgaacctctgtaatttgaacttgctga
gcgtttggttgcttgaaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19015991_19017195
seq2: B6Ng01-123L16.b_51_1243 (reverse)

seq1  TCTTTCAAAATGACTCTAG-TCTGTGTCAAGTTGACATAAAAACTAGCCA  49
      |||||| |||||||  ||| |||||||| || |||||| ||| |||||||
seq2  TCTTTCCAAATGACCTTAGTTCTGTGTCCAGGTGACAT-AAACCTAGCCA  49

seq1  GCACAGATGGTGACTATAACATTTCCTGCTTCCCAGGGAGACTGGGAGGA  99
      ||||||||||||||  |||||||  |||||||||||| ||||| ||||||
seq2  GCACAGATGGTGACATTAACATT--CTGCTTCCCAGGAAGACT-GGAGGA  96

seq1  TTTAATGAGTCAATACACATGGTTTTATAGTGTGGCCTGCCGTCTGCTGA  149
      ||| || ||||||||||||||| |||||||||||| ||| ||| ||||||
seq2  TTT-ATTAGTCAATACACATGG-TTTATAGTGTGG-CTG-CGTTTGCTGA  142

seq1  CGACACACACGATAGCTATTGTATTAGTTACTTTCTAGTCGTTGCAACCA  199
      |||||||||||| |||||||||||||||||| ||||||||||||| ||||
seq2  CGACACACACGAAAGCTATTGTATTAGTTAC-TTCTAGTCGTTGC-ACCA  190

seq1  AAATACCAAAGGATACCGTCATGTGCAGGATTTGTATTTTGAGTCACAGT  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAATACCAAAGGATACCGTCATGTGCAGGATTTGTA-TTTGAGTCACAGT  239

seq1  TTCAGAAGTGTCAGCTCCTCATGGCACGGAGGGAGTGTTGGGACAGAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGTGTCAGCTCCTCATGGCACGGAGGGAGTGTTGGGACAGAGGA  289

seq1  AATTTTTATCAAGGCAGGCAGGAAGCAGAGGTGGGGTGTGTGTGTGCAAA  349
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-TTTTATCAAGGCAGGCAGGAAGCAGAGGTGGGGTGTGTGTGTGCAAA  338

seq1  TATTAGAATGTGGCTGACTTTGATTTATTTTGACTATACCCTCAGCTCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAATGTGGCTGACTTTGATTTATTTTGACTATACCCTCAGCTCCT  388

seq1  GTGACCCTGAATTTTTCAGGTCCCCTGTGATGGTTTGAATGGGAATGGCT  449
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGA-CCTGAATTTTTCAGGTCCCCTGTGATGGTTTGAATGGGAATGGCT  437

seq1  CCCAAAGACTCAGACATTTGAATGCTTGGTTTCTAGTTGATAGAACTGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGACTCAGACATTTGAATGCTTGGTTTCTAGTTGATAGAACTGTT  487

seq1  TTGGGAGAGATTAGTAGTATGACCTTTGGGGGAGTGAGTTTTGTGATTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGAGATTAGTAGTATGACCTTTGGGGGAGTGAGTTTTGTGATTTC  537

seq1  AAAAGCCCAGGCCAAGCCAGACCCTACCTCCTCTGCCTCCAACTTTTGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCCAGGCCAAGCCAGACCCTACCTCCTCTGCCTCCAACTTTTGGA  587

seq1  TGTGGATATAAGCTCTCAGCTATTGCTCCAGAGCCATGCCTGTCTATCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATATAAGCTCTCAGCTATTGCTCCAGAGCCATGCCTGTCTATCTA  637

seq1  CAGTCAAACTAACTCCTTGCCATTATGGTCATGGACTTGCGCACGCAAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAACTAACTCCTTGCCATTATGGTCATGGACTTGCGCACGCAAGT  687

seq1  AAATGTTTTCTTTTATAAATTGTCTTGGTCATAGTGTCTGTTAATAGCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTCTTTTATAAATTGTCTTGGTCATAGTGTCTGTTAATAGCAA  737

seq1  TAGAAAGTAACCAAGACATCACTAGCACATTCAGGATGGGTATTTCTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTAACCAAGACATCACTAGCACATTCAGGATGGGTATTTCTTGT  787

seq1  TTACTTAGACATCTCTGGACGTGCCCTCATAGACATAGTCAAGTAGACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAGACATCTCTGGACGTGCCCTCATAGACATAGTCAAGTAGACAA  837

seq1  TGAAAGTTGAGCTGTGATGCTTCCAGCTCACATACTGCTTCTTTCAAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTGAGCTGTGATGCTTCCAGCTCACATACTGCTTCTTTCAAAGA  887

seq1  CTGAAAGGGGGAGGGGGGTAAAGGCTGCTCTCTGCAAAAGATGTAAGCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGGGGAGGGGGGTAAAGGCTGCTCTCTGCAAAAGATGTAAGCAG  937

seq1  CAGAGATCCAATTTAGACTTTAGCCAAGCTCCGAAATCTGAGCCTGACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCCAATTTAGACTTTAGCCAAGCTCCGAAATCTGAGCCTGACCA  987

seq1  CACTGTATGTTATCTCATGGAAAAATTAGTCATTTGCTTTTTATTAGAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTATGTTATCTCATGGAAAAATTAGTCATTTGCTTTTTATTAGAAT  1037

seq1  AGGGATCTAAAATCATGACGAACTTTTGTTTTCTTGTGGCAATAAAGTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCTAAAATCATGACGAACTTTTGTTTTCTTGTGGCAATAAAGTTG  1087

seq1  CTTATCAAGCTGGGCGTGGTGGCGCACACATTTAATCCCAGCACTCTGGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCAAGCTGGGCGTGGTGGCGCACACATTTAATCCCAGCACTCTGGA  1137

seq1  GGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTACAGAGT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTACAGAGT  1187

seq1  GAATTC  1205
      ||||||
seq2  GAATTC  1193

seq1: chr19_18885895_18887034
seq2: B6Ng01-123L16.g_68_1188

seq1  GAATTCAGATGCGTAATATGGAACAAAAGAGTATGCTTTCTCAGATGTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGCGTAATATGGAACAAAAGAGTATGCTTTCTCAGATGTCG  50

seq1  GGAAATAGTGTTTATCAGAAGGAGACTGGGAGATGCTATTGTGTGAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGTGTTTATCAGAAGGAGACTGGGAGATGCTATTGTGTGAGTAA  100

seq1  TCTCCAGAGACATTAATTATTAACCCTGGACAAGAGACAGATGTGTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAGACATTAATTATTAACCCTGGACAAGAGACAGATGTGTTGAG  150

seq1  TATTTGAGAAGACATACATTTATCTTTCACTGTAGTCTGGAAAGAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGAAGACATACATTTATCTTTCACTGTAGTCTGGAAAGAAAATG  200

seq1  ATATCACTACAATAACCTTTTTTGTTTATCTCTCTTTTGTTTTCTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTACAATAACCTTTTTTGTTTATCTCTCTTTTGTTTTCTTTAAT  250

seq1  AAACAAAATGACAATATATACCAGAGTGTGAGCAGCTTTGCTCAGGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATGACAATATATACCAGAGTGTGAGCAGCTTTGCTCAGGGCCT  300

seq1  CTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGT  350

seq1  CTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTAC  400

seq1  AAATCCAAGGTACACTCCTTTGTTGGTAGAGTTGAAAACAAAGTTGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAAGGTACACTCCTTTGTTGGTAGAGTTGAAAACAAAGTTGGTTT  450

seq1  TGCAGACTGAGATCACTTCTTTATTGACACTGGAGACAGGGGAGTACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTGAGATCACTTCTTTATTGACACTGGAGACAGGGGAGTACCAA  500

seq1  TGAAGAATCATTCCCCAGCATCATAAATAAACACATGATGTTATTCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATCATTCCCCAGCATCATAAATAAACACATGATGTTATTCACAA  550

seq1  AGATCACTGCTGATCCTGCTGGTCTTCAGCAGTACAGGGCCCTGACAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTGCTGATCCTGCTGGTCTTCAGCAGTACAGGGCCCTGACAACC  600

seq1  CAGCGAAAGTCTGTGCTTGCCTCTCAGGTTCTCTTCCTGGTTTTCACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGAAAGTCTGTGCTTGCCTCTCAGGTTCTCTTCCTGGTTTTCACCTC  650

seq1  TGCCCTGTGCAGTTGGTGTCTGAGGCAGGATGTGTATGCCATGGTGTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGTGCAGTTGGTGTCTGAGGCAGGATGTGTATGCCATGGTGTTAC  700

seq1  GTACTCATTAGCCTGCCATGACACTCTTAACCTCCCCACTCAAGCTCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCATTAGCCTGCCATGACACTCTTAACCTCCCCACTCAAGCTCCAC  750

seq1  ACCCTTTGTAGCTCTCTGTTCTTGGGAGGTGG-TCCTTTTGTATCTTCCT  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACCCTTTGTAGCTCTCTGTTCTTGGGAGGTGGTTCCTTTTGTATCTTCCT  800

seq1  TTCCTCAACAAAGTTTTTCTGGAAGTTAGTTTTATCGTAA--TTTTCAGT  847
      |||||||   ||||||||||||||||||||||||||||||  ||| ||||
seq2  TTCCTCA--CAAGTTTTTCTGGAAGTTAGTTTTATCGTAAATTTTCCAGT  848

seq1  ATAACAAAGATGTTGTTTGT-GGGTCTTTAGCCTACTCTTTTCTGGGGCA  896
       |||||||||||| |||||| ||||||||||||||||| ||||| |||||
seq2  TTAACAAAGATGTGGTTTGTGGGGTCTTTAGCCTACTC-TTTCT-GGGCA  896

seq1  G-AGTGCTTTTGCTTAAGTATTTCC-ATGGAG-ATCATGAGTTGTTGGCT  943
      | |||||||| || |||| |||||| |||||| ||||||||||| |||||
seq2  GAAGTGCTTTGGC-TAAG-ATTTCCAATGGAGAATCATGAGTTG-TGGCT  943

seq1  GGAAGA-CGCTTCCTTTCCACTGCTGTTGGCATGGCCCTTAGTTACCATT  992
      ||| || |||||||||||  |||||| |||||||| || ||| |||||||
seq2  GGAGGACCGCTTCCTTTCACCTGCTG-TGGCATGGGCC-TAG-TACCATT  990

seq1  AATGAGCAGATTATTTTTTTAATCTATTGAAAGATAGGAGAAGCACTCTA  1042
       |||  |||||||||||||| ||||| |||| ||||| ||||||||||||
seq2  -ATGGACAGATTATTTTTTT-ATCTA-TGAAGGATAGAAGAAGCACTCTA  1037

seq1  ATAGTTTTTGATAGGATGCCTCAAATTTTCAACGAATTGTTTAAAAACCT  1092
      || ||||||||||| | |||||||   ||||||||| |||||   |||||
seq2  AT-GTTTTTGATAGAAGGCCTCAA---TTCAACGAA-TGTTT--GAACCT  1080

seq1  CTGTTATTTTTGAAGCCTTATGCTGAGCGTTTGGTTTGCTTGAGAAGG  1140
      |||| |  ||||||  ||  |||||||||||||| |||||||| ||||
seq2  CTGTAA--TTTGAA--CT--TGCTGAGCGTTTGG-TTGCTTGAAAAGG  1121