BAC Information

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BAC

Clone NameB6Ng01-126B09
Chromosome19 (Build37)
Map Location 59,361,339 - 59,527,494
singlet/doubletdoublet
Overlap geneSlc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os
Upstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18
Downstream geneEmx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126B09.bB6Ng01-126B09.g
ACCDH928547DH928548
length1,1301,066
definitionDH928547|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B09, 5' end.DH928548|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,361,339 - 59,362,479)(59,526,419 - 59,527,494)
sequence
gaattccagtcctgtctgaacccttctgctgactatccacaatgaaaggt
ttgttgtcgggagtcttgtcatggaaaagcatgtgaaaaggacaaaggga
aagagctggcaatgtactgagtttaggacacagtcgatgacatctagcct
gcttctggctcataccacttttccatacactgatccttgactattcacag
ggatggtggactcctccatgatgcctatcatgggctacctggtggacctg
cggcacgtgtctgtctatgggagtgtgtatgccattgcagatgtagcctt
ctgcatggggtatgctatcggtaagaatactggctttcaggaaaaccttt
actttaatgtggtacagataaaacctcctagaaatacagaaatctttaca
ttttctggcaataagatgtttggagaaagggctgattttctgtttcccca
aaggtccctctgctggtggtgctattgcaaaggcaattggctttccttgg
ctcatgacaattattgggataattgatattgtttttgctccactctgctt
ttttcttcgaagtccacctgctaaggaagaaaaaatggtaagaaagcctc
tatttttttttcaatcatttctccatggccatctggatagtttctgcata
gttcaattctaaaataatttctgctcttcaatagaaacctctaaacagaa
gcagcaatatctccttcttagttactgacacaagacagtaacctctttta
ttattgttacttactcagccatttctttcaagcctcatgtttataaattt
gaagaataaaactagtcttgtacatattgtataaatctcggcaatcaaag
agaaccctagaacatttcaatctaattgtctatggtcctggaaggttgtc
ctgactcccacatatggtgccagtgacttctagcctcactttattcaggg
atagtgctgtcttggtcctaaagactaaaattcaggaaatacttttaaag
gtcttatgaagaatcatacttacaccctggggcatgcatgtgagcaatga
ctattattttcatgattagaagcacagtcatagaacagctataacggata
agtggttttttttttttgaacagttcaaat
gaattccatacttttctagggtaaagaactggacctagaaaggaaggggt
aaagccatctgaggaaaaagagaaatgccaggctttttcttttggactct
ccttgaaagctggggaggatgccaggaagacttgggaaacactattagct
cctgtcctgtgtggaacttggctttaagcaggtcctttcacacccacgag
tcagcgaacttttcaaagtgtggcgaatggtaagatgcccattttccagg
tgagaaggctgaaggtcagagaagttgtacactgtgccactttgcagtga
ttagatcatgaggaaccctggacagcccaagctacttctcacccagcctc
cagagatcacactccagccaacacaaaaggtcagcaaagagtccccaccc
tcagatgggtcacccaaactgacccaagccacagggcctattcatgcatc
ttgcttcttgtaatcctagcgcttgatggtttgcaccaactgtcctgaaa
gccacattcccaaccctgagctagcaaagcctgggagttaggagtcaagg
atgtgagtgagagctttctcagagctcaggaggaagcccttttatctgtg
tggctcccccgtgtctttcccgttagagattcaaaggggtcttgaaacat
cctctagtgggcaaaagaacatccggatgcacaaggcagaaaggaaagtg
gttggggctttcttagctctttacttttgccaactgtgttgggatagcaa
atctgggagattctatgatgccccaagaggaatattcacacccagaaaac
actcccttcagtatctacaccttaccaacagctctagactttgaaacagg
tagcctatgcttcgttctagtgcttatgattttagctgtggtgcccagtt
gcccatgccccgtggcagtggcaatactcacatcggtcagggccctggcc
cacacagctgaactactaggcctggcttctgttgcacaccgattgttcag
cgcaaagagctcggggcagctctcctccactaggagctggtcttacaccg
acccttgtagtggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_59361339_59362479
seq2: B6Ng01-126B09.b_46_1175

seq1  GAATTCCAGTCCTGTCTGAACCCTTCTGCTGACTATCCACAATGAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCTGTCTGAACCCTTCTGCTGACTATCCACAATGAAAGGT  50

seq1  TTGTTGTCGGGAGTCTTGTCATGGAAAAGCATGTGAAAAGGACAAAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTCGGGAGTCTTGTCATGGAAAAGCATGTGAAAAGGACAAAGGGA  100

seq1  AAGAGCTGGCAATGTACTGAGTTTAGGACACAGTCGATGACATCTAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGGCAATGTACTGAGTTTAGGACACAGTCGATGACATCTAGCCT  150

seq1  GCTTCTGGCTCATACCACTTTTCCATACACTGATCCTTGACTATTCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGCTCATACCACTTTTCCATACACTGATCCTTGACTATTCACAG  200

seq1  GGATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTG  250

seq1  CGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTT  300

seq1  CTGCATGGGGTATGCTATCGGTAAGAATACTGGCTTTCAGGAAAACCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGGGGTATGCTATCGGTAAGAATACTGGCTTTCAGGAAAACCTTT  350

seq1  ACTTTAATGTGGTACAGATAAAACCTCCTAGAAATACAGAAATCTTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATGTGGTACAGATAAAACCTCCTAGAAATACAGAAATCTTTACA  400

seq1  TTTTCTGGCAATAAGATGTTTGGAGAAAGGGCTGATTTTCTGTTTCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGCAATAAGATGTTTGGAGAAAGGGCTGATTTTCTGTTTCCCCA  450

seq1  AAGGTCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGG  500

seq1  CTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTT  550

seq1  TTTTCTTCGAAGTCCACCTGCTAAGGAAGAAAAAATGGTAAGAAAGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCGAAGTCCACCTGCTAAGGAAGAAAAAATGGTAAGAAAGCCTC  600

seq1  TATTTTTTTTTCAATCATTTCTCCATGGCCATCTGGATAGTTTCTGCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTTCAATCATTTCTCCATGGCCATCTGGATAGTTTCTGCATA  650

seq1  GTTCAATTCTAAAATAATTTCTGCTCTTCAATAGAAACCTCTAAACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTCTAAAATAATTTCTGCTCTTCAATAGAAACCTCTAAACAGAA  700

seq1  GCAGCAATATCTCCTTCTTAGTTACTGACACAAGACAGTAACCTCTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAATATCTCCTTCTTAGTTACTGACACAAGACAGTAACCTCTTTTA  750

seq1  TTATTGTTACTTACTCAGCCATTTCTTTCAAGCCTCATGTTTATAAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTACTTACTCAGCCATTTCTTTCAAGCCTCATGTTTATAAATTT  800

seq1  GAAGAATAAAACTAGTCTTGTACATATTGTATAAATCTCGGCAATCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATAAAACTAGTCTTGTACATATTGTATAAATCTCGGCAATCAAAG  850

seq1  AGAACCCTAGAACAATTCAATCTAATTGTCTATGGTCCTGGAAGGTTGTC  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGAACCCTAGAACATTTCAATCTAATTGTCTATGGTCCTGGAAGGTTGTC  900

seq1  CTGACTCCCACAATATGGTGCCAGTGACTTCTAGCCTCACTTTATTCAGT  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  CTGACTCCCAC-ATATGGTGCCAGTGACTTCTAGCCTCACTTTATTCAGG  949

seq1  GATAGTTGCTGTCTTGGTCCTACAGACATAAAATTCTAGAAATACTTTTA  1000
      ||||| |||||||||||||||| |||| ||||||||  ||||||||||||
seq2  GATAG-TGCTGTCTTGGTCCTAAAGAC-TAAAATTCAGGAAATACTTTTA  997

seq1  AGGGTCTTTATGAAAGATCATACTTACACCCTGGGGCATGCATGTGAGCA  1050
      | |||| |||||||  ||||||||||||||||||||||||||||||||| 
seq2  AAGGTC-TTATGAAGAATCATACTTACACCCTGGGGCATGCATGTGAGC-  1045

seq1  AATGGAACTATTTATTTTCATGATTAGAAGCACAGTCATAGACAAGCTAT  1100
      ||||  |||| |||||||||||||||||||||||||||||||  ||||||
seq2  AATG--ACTA-TTATTTTCATGATTAGAAGCACAGTCATAGAACAGCTAT  1092

seq1  AACGAATAAAGTGTTTTTTTTTTTTTTGAACAAGTTCAAAT  1141
      |||| || |||||  |||||||||||||||| |||||||||
seq2  AACGGAT-AAGTG-GTTTTTTTTTTTTGAAC-AGTTCAAAT  1130

seq1: chr19_59526419_59527494
seq2: B6Ng01-126B09.g_70_1135 (reverse)

seq1  CTTC-----CAGGGGTCGGTTGTGAAGACCAGCTCCTAGTGGGAGGAGAG  45
      ||||     || ||||||| ||| |||||||||||||||| |||||||||
seq2  CTTCCACTACAAGGGTCGG-TGT-AAGACCAGCTCCTAGT-GGAGGAGAG  47

seq1  CTGCACCGAGCTTCTCTGCGCTGTGACAACCGGGTGTTGCAAACAGGAAA  95
      |||| |||||| ||| |||||||  |||| | |||| ||| |||||  ||
seq2  CTGCCCCGAGC-TCTTTGCGCTG-AACAATC-GGTG-TGC-AACAG--AA  90

seq1  GCCAGGCCTAGTAAGTTCAGCTTGTGTGTGCCAGGGCCCCTGACCGATGT  145
      |||||||||||| |||||||| |||||| ||||||| |||||||||||||
seq2  GCCAGGCCTAGT-AGTTCAGC-TGTGTGGGCCAGGG-CCCTGACCGATGT  137

seq1  GAGTA-TGCCACTGCCACGGGGCATGGGCAACTGGGGCACCACAGCTAAA  194
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGTATTGCCACTGCCACGGGGCATGGGCAACT-GGGCACCACAGCTAAA  186

seq1  ATCATAAGCACTAGAACGAAGCATAAGGCTACCTGTTTCAAAGTCTAGAG  244
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCATAAGCACTAGAACGAAGCAT-AGGCTACCTGTTTCAAAGTCTAGAG  235

seq1  CTGTTGGTAAGGTGTAGATACTGGAGGGAGTGTTTTCTGGGTGTGAATAT  294
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGTTGGTAAGGTGTAGATACTGAAGGGAGTGTTTTCTGGGTGTGAATAT  285

seq1  TCCTCTTGGGGCATCATAGAATCTCCCAGATTTGCTATCCCAACACAGTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTGGGGCATCATAGAATCTCCCAGATTTGCTATCCCAACACAGTT  335

seq1  GGCAAAAGTAAAGAGCTAAGAAAGCCCCAACCACTTTCCTTTCTGCCTTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGTAAAGAGCTAAGAAAGCCCCAACCACTTTCCTTTCTGCCTTG  385

seq1  TTGCATCCGGATGTTCTTTTGCCCACTAGAGGATGTTTCAAGACCCCTTT  444
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGCATCCGGATGTTCTTTTGCCCACTAGAGGATGTTTCAAGACCCCTTT  434

seq1  GAATCTCTAACGGGAAAGACACGGGGGAGCCACACAGATAAAAGGGCTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTAACGGGAAAGACACGGGGGAGCCACACAGATAAAAGGGCTTC  484

seq1  CTCCTGAGCTCTGAGAAAGCTCTCACTCACATCCTTGACTCCTAACTCCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGCTCTGAGAAAGCTCTCACTCACATCCTTGACTCCTAACTCCC  534

seq1  AGGCTTTGCTAGCTCAGGGTTGGGAATGTGGCTTTCAGGACAGTTGGTGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGCTAGCTCAGGGTTGGGAATGTGGCTTTCAGGACAGTTGGTGC  584

seq1  AAACCATCAAGCGCTAGGATTACAAGAAGCAAGATGCATGAATAGGCCCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCAAGCGCTAGGATTACAAGAAGCAAGATGCATGAATAGGCCCT  634

seq1  GTGGCTTGGGTCAGTTTGGGTGACCCATCTGAGGGTGGGGACTCTTTGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTGGGTCAGTTTGGGTGACCCATCTGAGGGTGGGGACTCTTTGCT  684

seq1  GACCTTTTGTGTTGGCTGGAGTGTGATCTCTGGAGGCTGGGTGAGAAGTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTTGTGTTGGCTGGAGTGTGATCTCTGGAGGCTGGGTGAGAAGTA  734

seq1  GCTTGGGCTGTCCAGGGTTCCTCATGATCTAATCACTGCAAAGTGGCACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGCTGTCCAGGGTTCCTCATGATCTAATCACTGCAAAGTGGCACA  784

seq1  GTGTACAACTTCTCTGACCTTCAGCCTTCTCACCTGGAAAATGGGCATCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAACTTCTCTGACCTTCAGCCTTCTCACCTGGAAAATGGGCATCT  834

seq1  TACCATTCGCCACACTTTGAAAAGTTCGCTGACTCGTGGGTGTGAAAGGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTCGCCACACTTTGAAAAGTTCGCTGACTCGTGGGTGTGAAAGGA  884

seq1  CCTGCTTAAAGCCAAGTTCCACACAGGACAGGAGCTAATAGTGTTTCCCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTAAAGCCAAGTTCCACACAGGACAGGAGCTAATAGTGTTTCCCA  934

seq1  AGTCTTCCTGGCATCCTCCCCAGCTTTCAAGGAGAGTCCAAAAGAAAAAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCTGGCATCCTCCCCAGCTTTCAAGGAGAGTCCAAAAGAAAAAG  984

seq1  CCTGGCATTTCTCTTTTTCCTCAGATGGCTTTACCCCTTCCTTTCTAGGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATTTCTCTTTTTCCTCAGATGGCTTTACCCCTTCCTTTCTAGGT  1034

seq1  CCAGTTCTTTACCCTAGAAAAGTATGGAATTC  1076
      ||||||||||||||||||||||||||||||||
seq2  CCAGTTCTTTACCCTAGAAAAGTATGGAATTC  1066