BAC Information

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BAC

Clone NameB6Ng01-126E17
Chromosome19 (Build37)
Map Location 55,517,291 - 55,518,406
singlet/doubletsinglet
Overlap geneVti1a
Upstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6
Downstream geneLOC100043479, Tcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126E17.bB6Ng01-126E17.g
ACCDH928699DH928700
length7051,104
definitionDH928699|Mus musculus domesticus DNA, BAC clone: B6Ng01-126E17, 5' end.DH928700|Mus musculus domesticus DNA, BAC clone: B6Ng01-126E17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccaggtcttagaccactcccctgtgctccatgtcaaacacaatt
ttgggttttgaaactttttttttttgcagtgcaaggctttctgcgatgag
gttccaagcaattgtggatttctttttctcgacagacacgcctgccagaa
gacatgtggctcacaatgcagtggcagagctagcctctcccttaggaact
ctgggtacccatgaagaattgcagcttttcagttcatatgtcatacctct
gtctccgcagcctgatatactctagggctctctctctctctctctctctc
tctctctctctctctctctcacacactctctcgagttaatataccccccc
gcccgcgtgcttagacattctttttaaaactttctctggggggggggggg
gtgcggttcatggaaagcactcgccaaataccccatgctatatccgtatg
aaaaaactgtgtgcatgtgtgcacataaaaaaaaagagagagagggtgcc
tgggatgttttcgtgtgaggtataaaataaaaggatctctctctctggct
tgcgtctctaagactctcaaagagacgctgtagggatgagagactgtggt
caaccgtctctgtgtgtttttaaaacgcgagacacatgtgaaggtgacac
attataggagagtcactctatctttctaaatgtcaaaaacacatcttaca
tatct
gaattctttttctaccacagtcctccagtctcagtcttccgaggggctgg
aatcacaggtgcatatggccacgcctgtgtcaatcccacttttatggctg
aacacttccttaaagcagttcctcggttccaaatggctgatgacggtgcc
aggacagcacgtgcctcatctgctggcagctgttccacaaaagatgctaa
ctacagagactaaggagcaagaatatctcctgatcaactaatactgagct
gtgtgagacgagacgtgaggaaaacaaacaagaggggttgatgttttatt
ttcctgaccaagaaaggtcagatacattggggcggaatgctgcatcttca
gaaagtcattgtcttcaatgctgagattccactgaatagaagagttttca
aatattaaaatctctgtggtaggctctgacctcaggataacaagaaaatg
gcaggtactcatttttttcacatctaaaaatgacactcactataacgcca
ttatataaaaggcctatttcccctcaaaaaaataaacaattgtgtcaatg
cttcagcataactgccatatgtgtgtatgtggtatgcatggttatttcat
gacttaaatataaaacaacgctactgcccacagtcttaaagcccataaag
cagtgacttctagctcacttacacttttccctcaacaaagcagattttca
gctgtggagagtcttttctcattgcatgtttagaggacaaagtggtttta
cttacacacacacacacacacacacacacacacacacacacacacttgca
tgtatgtctgtgcactacatggtgtgtagggcccacggaggccagaacag
ggcttctgacttctttgaaatagttatagatggatgtttgccactatgtg
gatactaagaaatcgaacctgggttgtctagaagagcagcctgtgcataa
gcagtcagccctaagtttatctccctagctctcctggtgtgggttaagtg
cttataaaggaactcatgcttgcctggcatggacaaggcctgtggtgatc
tcagccagccccaatcaaatattacgccgatgcagtgtcagtagctaatc
ttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_55517291_55518406
seq2: B6Ng01-126E17.g_66_1169 (reverse)

seq1  TCAAGATTAGCTTACATGCACTTGCATCTGTGCGTATATATTTGATTTGG  50
      ||||||||||| |||   ||| ||||||   ||||| |||||||| ||||
seq2  TCAAGATTAGC-TACTGACAC-TGCATC--GGCGTA-ATATTTGA-TTGG  44

seq1  GGCTGTGCTGTAGATCACACCAGGGCCTTGTCCATGCCAGGCAAGCATGA  100
      ||||| |||| |||||||  || |||||||||||||||||||||||||||
seq2  GGCTG-GCTG-AGATCACCACA-GGCCTTGTCCATGCCAGGCAAGCATGA  91

seq1  GTTTCCTTTTATAAGCACTTAACCCACACCAGGAGAAGCTAGGGAGAT-A  149
      |||  | |||||||||||||||||||||||||||| |||||||||||| |
seq2  GTT--CCTTTATAAGCACTTAACCCACACCAGGAG-AGCTAGGGAGATAA  138

seq1  ACTTAGGGCTGACTGCTGTATGCACAGGCTGCTCTTCTAGACAACCCAGG  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTTAGGGCTGACTGCT-TATGCACAGGCTGCTCTTCTAGACAACCCAGG  187

seq1  TTCGATTTC-TAGTATCCACATAGTGGCAAACATCCATCTATAACTATTT  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATTTCTTAGTATCCACATAGTGGCAAACATCCATCTATAACTATTT  237

seq1  CAAAGAAGTCAGAAGCCCTGTTCTGGCCTCCGTGGGCCCTACACACCATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGTCAGAAGCCCTGTTCTGGCCTCCGTGGGCCCTACACACCATG  287

seq1  TAGTGCACAGACATACATGCAAGTTGTGTGTGTGTGTGTGTGTGTGTGTG  348
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAGTGCACAGACATACATGCAAG-TGTGTGTGTGTGTGTGTGTGTGTGTG  336

seq1  TGTGTGTGTGTGTGTAAGTAAAACCACTTTGTCCTCTAAACATGCAATGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTAAGTAAAACCACTTTGTCCTCTAAACATGCAATGA  386

seq1  GAAAAGACTCTCCACAGCTGAAAATCTGCTTTGTTGAGGGAAAAGTGTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACTCTCCACAGCTGAAAATCTGCTTTGTTGAGGGAAAAGTGTAA  436

seq1  GTGAGCTAGAAGTCACTGCTTTATGGGCTTTAAGACTGTGGGCAGTAGCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTAGAAGTCACTGCTTTATGGGCTTTAAGACTGTGGGCAGTAGCG  486

seq1  TTGTTTTATATTTAAGTCATGAAATAACCATGCATACCACATACACACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATATTTAAGTCATGAAATAACCATGCATACCACATACACACAT  536

seq1  ATGGCAGTTATGCTGAAGCATTGACACAATTGTTTATTTTTTTGAGGGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGTTATGCTGAAGCATTGACACAATTGTTTATTTTTTTGAGGGGA  586

seq1  AATAGGCCTTTTATATAATGGCGTTATAGTGAGTGTCATTTTTAGATGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCCTTTTATATAATGGCGTTATAGTGAGTGTCATTTTTAGATGTG  636

seq1  AAAAAAATGAGTACCTGCCATTTTCTTGTTATCCTGAGGTCAGAGCCTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGAGTACCTGCCATTTTCTTGTTATCCTGAGGTCAGAGCCTAC  686

seq1  CACAGAGATTTTAATATTTGAAAACTCTTCTATTCAGTGGAATCTCAGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGATTTTAATATTTGAAAACTCTTCTATTCAGTGGAATCTCAGCA  736

seq1  TTGAAGACAATGACTTTCTGAAGATGCAGCATTCCGCCCCAATGTATCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACAATGACTTTCTGAAGATGCAGCATTCCGCCCCAATGTATCTG  786

seq1  ACCTTTCTTGGTCAGGAAAATAAAACATCAACCCCTCTTGTTTGTTTTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTTGGTCAGGAAAATAAAACATCAACCCCTCTTGTTTGTTTTCC  836

seq1  TCACGTCTCGTCTCACACAGCTCAGTATTAGTTGATCAGGAGATATTCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTCTCGTCTCACACAGCTCAGTATTAGTTGATCAGGAGATATTCTT  886

seq1  GCTCCTTAGTCTCTGTAGTTAGCATCTTTTGTGGAACAGCTGCCAGCAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTAGTCTCTGTAGTTAGCATCTTTTGTGGAACAGCTGCCAGCAGA  936

seq1  TGAGGCACGTGCTGTCCTGGCACCGTCATCAGCCATTTGGAACCGAGGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCACGTGCTGTCCTGGCACCGTCATCAGCCATTTGGAACCGAGGAA  986

seq1  CTGCTTTAAGGAAGTGTTCAGCCATAAAAGTGGGATTGACACAGGCGTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTAAGGAAGTGTTCAGCCATAAAAGTGGGATTGACACAGGCGTGG  1036

seq1  CCATATGCACCTGTGATTCCAGCCCCTCGGAAGACTGAGACTGGAGGACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGCACCTGTGATTCCAGCCCCTCGGAAGACTGAGACTGGAGGACT  1086

seq1  GTGGTAGAAAAAGAATTC  1116
      ||||||||||||||||||
seq2  GTGGTAGAAAAAGAATTC  1104