BAC Information

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BAC

Clone NameB6Ng01-128A16
Chromosome19 (Build37)
Map Location 55,568,859 - 55,715,177
singlet/doubletdoublet
Overlap geneVti1a
Upstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6, LOC100043479
Downstream geneTcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128A16.bB6Ng01-128A16.g
ACCDH929997DH929998
length5481,107
definitionDH929997|Mus musculus domesticus DNA, BAC clone: B6Ng01-128A16, 5' end.DH929998|Mus musculus domesticus DNA, BAC clone: B6Ng01-128A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,714,625 - 55,715,177)(55,568,859 - 55,569,980)
sequence
ttctgcagttcttgctccagttcctgcctcgagttcctgccttggcttcc
ctgactgatggactctcagccaaataaacactctgctatgataatagctc
ttggtcatgatattatcacagcagtaaaaagcgagtgactaaagtgaggc
ccaggggattatgggagcctgtgaactggaattggagagccctagaggag
gcgaaacagcttgggggaggggggggcgggcagtgggaggagcagaagca
gtttccgggaaacagtgggaggagcctgcaggggaggagcctgtagggga
ccaaggagactgcaaacttaactggcaaaagtagacagcatccccaagcc
ctttgaccacggatgagagctttctatgattcattgtggaagagagttct
gaggaggtaagagagccaggctcagtgacctgtgtttgctaggagcatag
ggagaaagtggtggcttcctgacacatgtgtgtcagcgctggcataaagt
gtgcataaaggacagtaacgtgttacctctgctacccttgccacgccc
gaattccattgtgccccttagagtttcctcttacctcctaaagacccatt
tcttctccattcacctccaaaactctgtctggtaaccctgtcagctgact
aaggtctgttggagcgcttgtatccgtgacattttctctgaactcttctc
tctttcctgccttttgcatgtcttgtacatgaagctgtatgggttctggt
gtggaaattgctgagtgtgcttgcctcttcagcatcatgctgtgctgtgc
ctggaccatggctcagttagagtcttccagaaaccaagctgaggggctgc
tgagctgcaggctttatctgtggctgcgagattcctgacctgtgctgccg
atgcagctttaagagacaagatggctctccaggcatggtggtgtgcacct
gtaatcacagctctgaggggctgagcatgggttaagctgtagtttcaggt
gtgttgtggccacaccaagacaggcttgtctctaatagtgtgttgaatac
aagcaatataaggaaatgtgggaattctctttcagtctggcctccttcat
tgtttctttcttggtgcatataagtattgagggagaattatcagatcaag
cagcttaaactgctgtgtagtgctcagctatgccatgtgctgtgctctga
aagtctgtgtggtcatgcaatctgcctggtttccctcctgtccatagcag
cagtactcagagtaagcaatttaccctagcgaggagttactcacactctc
ctgtacgaaagaaaggcttagatctctagaactcatcaaagctttactgc
atctcctgtacttgtcttccttccagaaagttagcaattcttgtgtctgg
tttttcttctttccctggaggttgtcctgaattcgagcacttcctccatc
tcagtagaagccaaagcccctcatgtcttaagtctcaaatgacgagagat
gtttaaaagaaaaaagaaaagaaaccaaacaaacagcaaacaacaacctg
tcttatgtaaccactccctggagtcagactctaagagtcttcagtactga
gtgtaacccttaagtctggggcacagggaccagacccatgtcaaggaaca
cattcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_55714625_55715177
seq2: B6Ng01-128A16.b_47_599 (reverse)

seq1  GGCGTGGCAAGGGTAGCAGAGGTAACACGTTACTGTCCTTTATGCACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGCAAGGGTAGCAGAGGTAACACGTTACTGTCCTTTATGCACACT  50

seq1  TTATGCCAGCGCTGACACACATGTGTCAGGAAGCCACCACTTTCTCCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCAGCGCTGACACACATGTGTCAGGAAGCCACCACTTTCTCCCTA  100

seq1  TGCTCCTAGCAAACACAGGTCACTGAGCCTGGCTCTCTTACCTCCTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTAGCAAACACAGGTCACTGAGCCTGGCTCTCTTACCTCCTCAGA  150

seq1  ACTCTCTTCCACAATGAATCATCGAAAGCTCTCATCCGTGGTCAAAGGGC  200
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTCTCTTCCACAATGAATCATAGAAAGCTCTCATCCGTGGTCAAAGGGC  200

seq1  TTGGGGATGCTGTCTACTTTTGCCAGTTAAGTTTGCAGTCTCCTTGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATGCTGTCTACTTTTGCCAGTTAAGTTTGCAGTCTCCTTGGTCC  250

seq1  CCTACAGGCTCCTCCCCTGCAGGCTCCTCCCACTGTTTCCCGGAAACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGGCTCCTCCCCTGCAGGCTCCTCCCACTGTTTCCCGGAAACTGC  300

seq1  TTCTGCTCCTCCCACTGCCCGCCCCCCCCTCCCCCAAGCTGTTTCGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCCTCCCACTGCCCGCCCCCCCCTCCCCCAAGCTGTTTCGCCTC  350

seq1  CTCTAGGGCTCTCCAATTCCAGTTCACAGGCTCCCATAATCCCCTGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGGCTCTCCAATTCCAGTTCACAGGCTCCCATAATCCCCTGGGCC  400

seq1  TCACTTTAGTCACTCGCTTTTTACTGCTGTGATAATATCATGACCAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTAGTCACTCGCTTTTTACTGCTGTGATAATATCATGACCAAGAG  450

seq1  CTATTATCATAGCAGAGTGTTTATTTGGCTGAGAGTCCATCAGTCAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATCATAGCAGAGTGTTTATTTGGCTGAGAGTCCATCAGTCAGGGA  500

seq1  AGCCAAGGCAGGAACTCGAGGCAGGAACTGGAGCAAGAACTGCAGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGCAGGAACTCGAGGCAGGAACTGGAGCAAGAACTGCAGAAGAA  550

seq1  TTC  553
      |||
seq2  TTC  553

seq1: chr19_55568859_55569980
seq2: B6Ng01-128A16.g_70_1176

seq1  GAATTCCATTGTGCCCCTTAGAGTTTCCTCTTACCTCCTAAAGACCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGTGCCCCTTAGAGTTTCCTCTTACCTCCTAAAGACCCATT  50

seq1  TCTTCTCCATTCACCTCCAAAACTCTGTCTGGTAACCCTGTCAGCTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCATTCACCTCCAAAACTCTGTCTGGTAACCCTGTCAGCTGACT  100

seq1  AAGGTCTGTTGGAGCGCTTGTATCCGTGACATTTTCTCTGAACTCTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTGTTGGAGCGCTTGTATCCGTGACATTTTCTCTGAACTCTTCTC  150

seq1  TCTTTCCTGCCTTTTGCATGTCTTGTACATGAAGCTGTATGGGTTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTGCCTTTTGCATGTCTTGTACATGAAGCTGTATGGGTTCTGGT  200

seq1  GTGGAAATTGCTGAGTGTGCTTGCCTCTTCAGCATCATGCTGTGCTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATTGCTGAGTGTGCTTGCCTCTTCAGCATCATGCTGTGCTGTGC  250

seq1  CTGGACCATGGCTCAGTTAGAGTCTTCCAGAAACCAAGCTGAGGGGCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCATGGCTCAGTTAGAGTCTTCCAGAAACCAAGCTGAGGGGCTGC  300

seq1  TGAGCTGCAGGCTTTATCTGTGGCTGCGAGATTCCTGACCTGTGCTGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCAGGCTTTATCTGTGGCTGCGAGATTCCTGACCTGTGCTGCCG  350

seq1  ATGCAGCTTTAAGAGACAAGATGGCTCTCCAGGCATGGTGGTGTGCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTTTAAGAGACAAGATGGCTCTCCAGGCATGGTGGTGTGCACCT  400

seq1  GTAATCACAGCTCTGAGGGGCTGAGCATGGGTTAAGCTGTAGTTTCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCACAGCTCTGAGGGGCTGAGCATGGGTTAAGCTGTAGTTTCAGGT  450

seq1  GTGTTGTGGCCACACCAAGACAGGCTTGTCTCTAATAGTGTGTTGAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGGCCACACCAAGACAGGCTTGTCTCTAATAGTGTGTTGAATAC  500

seq1  AAGCAATATAAGGAAATGTGGGAATTCTCTTTCAGTCTGGCCTCCTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATATAAGGAAATGTGGGAATTCTCTTTCAGTCTGGCCTCCTTCAT  550

seq1  TGTTTCTTTCTTGGTGCATATAAGTATTGAGGGAGAATTATCAGATCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTCTTGGTGCATATAAGTATTGAGGGAGAATTATCAGATCAAG  600

seq1  CAGCTTAAACTGCTGTGTAGTGCTCAGCTATGCCATGTGCTGTGCTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAAACTGCTGTGTAGTGCTCAGCTATGCCATGTGCTGTGCTCTGA  650

seq1  AAGTCTGTGTGGTCATGCAATCTGCCTGGTTTCCCTCCTGTCCATAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTGTGGTCATGCAATCTGCCTGGTTTCCCTCCTGTCCATAGCAG  700

seq1  CAGTACTCAGAGTAAGCAATTTACCCTAGCGAGGAGTTACTCACACTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTCAGAGTAAGCAATTTACCCTAGCGAGGAGTTACTCACACTCTC  750

seq1  CTGTACGAAAGAAAGGCTTAGATCTCTAGAACTCATCAAAGCTTTACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACGAAAGAAAGGCTTAGATCTCTAGAACTCATCAAAGCTTTACTGC  800

seq1  ATCTCCTGTACTTGTCTTCCTTCCAGAAGGTTAGCAATTCTTGTGTCTGG  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCTCCTGTACTTGTCTTCCTTCCAGAAAGTTAGCAATTCTTGTGTCTGG  850

seq1  TTTTTCTTCTTTCCCTGGAGGTTGTCCTGAATTCGAGCACTTCCTCCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCTTTCCCTGGAGGTTGTCCTGAATTCGAGCACTTCCTCCATC  900

seq1  TCAGTAGAAGCCAAAGCCCCTCATGTCTTAAGTCTCAAATGACGAGAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGAAGCCAAAGCCCCTCATGTCTTAAGTCTCAAATGACGAGAGAT  950

seq1  GGTTAAAAAGAAAAAAAGAAAAAGAAAACCAAAACAAACAAACAAACAAA  1000
       ||| |||||||||||   ||||||||  | |||||||| | ||||| ||
seq2  -GTTTAAAAGAAAAAA--GAAAAGAAA--CCAAACAAAC-AGCAAAC-AA  993

seq1  CAAACCCTGTCTTTATGTAAACCACCTTCCCT-GAGTCAGGAACTCTAAA  1049
      |||  |||||| |||||| ||||||  ||||| |||||||  ||||| ||
seq2  CAA--CCTGTC-TTATGT-AACCAC--TCCCTGGAGTCAG--ACTCT-AA  1034

seq1  GAGTCTTCAGTACTGAGTGTAACCCTTAAGTCTGGGGCACA-GGACCAGA  1098
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGTCTTCAGTACTGAGTGTAACCCTTAAGTCTGGGGCACAGGGACCAGA  1084

seq1  CCCATTGTCCAAGGACACATTCCA  1122
      |||| |||| | | ||||||||||
seq2  CCCA-TGTCAAGGAACACATTCCA  1107